NO06G03230, NO06G03230 (gene) Nannochloropsis oceanica

Overview
NameNO06G03230
Unique NameNO06G03230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length864
Alignment locationchr6:904363..905226 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:904363..905226 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO06G03230 vs. NCBI_GenBank
Match: EWM20145.1 (hypothetical protein Naga_101508g3 [Nannochloropsis gaditana])

HSP 1 Score: 73.9 bits (180), Expect = 6.500e-10
Identity = 89/209 (42.58%), Postives = 103/209 (49.28%), Query Frame = 0 
Query:    1 MLWSSATKAGAMVWRGVVASRSGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKRIESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEK 210
            ML     KAGAM  RG      GKGRVLRG F S   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ EIK IES++                                              XXXXXXXXXXXXXXXXXXXXXXXX           R+K ++QLA+T+DYEPYQAA+   R K  G  G+ E++E+
Sbjct:   37 MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFYSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEIKYIESKA----------------------------------------AAEIAQXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKRKKRGGTGGLEEKEEE 205
[Close]
BLAST of NO06G03230 vs. NCBI_GenBank
Match: EWM20066.1 (hypothetical protein Naga_101980g1 [Nannochloropsis gaditana])

HSP 1 Score: 70.9 bits (172), Expect = 5.500e-9
Identity = 102/209 (48.80%), Postives = 119/209 (56.94%), Query Frame = 0 
Query:    1 MLWSSATKAGAMVWRGVVASRSGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKRIESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEK 210
            ML     KAGAM  RG      GKGRVLRG FSS   TG  TS+  E GK     +Q IG V  VAG+TA  V   DQ EIK ++S++                                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +K ++QLA+T+DYEPYQAA+   R K  G  G+ E++E+
Sbjct:  100 MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSNGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEIKYVQSKA----------------------------------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEE 268
[Close]
BLAST of NO06G03230 vs. NCBI_GenBank
Match: EWM19993.1 (hypothetical protein Naga_102410g1 [Nannochloropsis gaditana])

HSP 1 Score: 70.1 bits (170), Expect = 9.400e-9
Identity = 105/210 (50.00%), Postives = 120/210 (57.14%), Query Frame = 0 
Query:    1 MLWSSATKAGAMVWRGVVASRSGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKRIESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEKK 211
            ML     KAGAM  RG      GKGRVLRG FSS   TG  TS+  E GK     +Q IG V  VAG+TA  V   DQ EIK ++S++                                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +K ++QLA+T+DYEPYQAA+   R K RGG   SEE E++
Sbjct:   19 MLRRFTAKAGAMARRGSTLPGPGKGRVLRGPFSSTAHTGPGTSNGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEIKYVQSKA----------------------------------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKREVQLAYTQDYEPYQAALVDKRKK-RGGTSGSEEKEEE 187
[Close]
BLAST of NO06G03230 vs. NCBI_GenBank
Match: EWM20057.1 (hypothetical protein Naga_102002g2 [Nannochloropsis gaditana])

HSP 1 Score: 67.0 bits (162), Expect = 8.000e-8
Identity = 67/214 (31.31%), Postives = 80/214 (37.38%), Query Frame = 0 
Query:    1 MLWSSATKAGAMVWRGVVASRSGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQ----MEIKRIESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEKK 211
            ML     KAGAM  RG      GKGRVLRG FSS   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ     EIK ++S++                                                                                 R+K ++QLA T+DYEPYQAA+   R K RGG   SEE E++
Sbjct:   19 MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSKA----------------------------------------------------------AAEIARVEDKRAMSEVFWKAEVERFKREVQLAFTQDYEPYQAALVDKRKK-RGGTSGSEEKEEE 173
[Close]
BLAST of NO06G03230 vs. NCBI_GenBank
Match: EWM20060.1 (hypothetical protein Naga_101993g1 [Nannochloropsis gaditana])

HSP 1 Score: 65.5 bits (158), Expect = 2.300e-7
Identity = 112/210 (53.33%), Postives = 122/210 (58.10%), Query Frame = 0 
Query:    1 MLWSSATKAGAMVWRGVVASRSGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKRIESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEKK 211
            ML     KAGAM  RG      GKGRVLRG FSS   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ E+                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         R+K ++QLA T+DYEPYQAA+   R KTRGG   SEE E++
Sbjct:   79 MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEM-------------------------ATEIKYIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMFWKAEVERFKREVQLAFTQDYEPYQAALVDKR-KTRGGTSGSEEKEEE 262
[Close]
BLAST of NO06G03230 vs. NCBI_GenBank
Match: EWM20146.1 (hypothetical protein Naga_101508g1 [Nannochloropsis gaditana])

HSP 1 Score: 65.5 bits (158), Expect = 2.300e-7
Identity = 80/188 (42.55%), Postives = 95/188 (50.53%), Query Frame = 0 
Query:   22 SGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKRIESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEK 210
            +GKGRVLRG F S   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ EIK IES++                                              XXXXXXXXXXXXXXXXXXXXXXXX           R+K ++QLA+T+DYEPYQAA+   R K  G  G+ E++E+
Sbjct:    6 TGKGRVLRGGFYSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEIKYIESKA----------------------------------------AAEIAQXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKRKKRGGTGGLEEKEEE 153
[Close]
BLAST of NO06G03230 vs. NCBI_GenBank
Match: EWM20119.1 (hypothetical protein Naga_101718g2 [Nannochloropsis gaditana])

HSP 1 Score: 65.1 bits (157), Expect = 3.000e-7
Identity = 123/214 (57.48%), Postives = 134/214 (62.62%), Query Frame = 0 
Query:    1 MLWSSATKAGAMVWRGVVASRSGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQ----MEIKRIESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEKK 211
            ML     KAGAM  RG      GKGRVLRG F S   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ     EIK IES++            XXXXXXXXXXXXXXXXX   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           R+K ++QLA T+DYEPYQAA+   R K RGG   SEE E++
Sbjct:   82 MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFYSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYIESKA--------AAEIXXXXXXXXXXXXXXXXXEDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAFTQDYEPYQAALVDKRKK-RGGISGSEEKEEE 286
The following BLAST results are available for this feature:
BLAST of NO06G03230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM20145.16.500e-1042.58hypothetical protein Naga_101508g3 [Nannochloropsi... [more]
EWM20066.15.500e-948.80hypothetical protein Naga_101980g1 [Nannochloropsi... [more]
EWM19993.19.400e-950.00hypothetical protein Naga_102410g1 [Nannochloropsi... [more]
EWM20057.18.000e-831.31hypothetical protein Naga_102002g2 [Nannochloropsi... [more]
EWM20060.12.300e-753.33hypothetical protein Naga_101993g1 [Nannochloropsi... [more]
EWM20146.12.300e-742.55hypothetical protein Naga_101508g1 [Nannochloropsi... [more]
EWM20119.13.000e-757.48hypothetical protein Naga_101718g2 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR029ncniR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03230.1NO06G03230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03230.1NO06G03230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03230 ID=NO06G03230|Name=NO06G03230|organism=Nannochloropsis oceanica|type=gene|length=864bp
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGgtaaggtggcatattgtaatgcattttggaagg
agggcttggtggctattggtaaggggtgttgggagggggggggggaacgt
ttggtgcacgcgaccgcatactgcccgagggatgttggttcgtttttatc
tgcacgtctatctcgtttgaggtgcaatctgtgttgtgcggacaagggcc
ggtgccaaggtgctcatgcacgagcacattcatacacgccgacagGGAAG
GGACGCGTACTGCGAGGGGCATTCTCCTCGGCTACCGACACGGGGGCGCG
CACGAGCAGTAGAGGGGAGTCTGGAAAGCCCTTGAAGGGAGATTACCAGC
CCATTGGTGTGGTGGCCGCGGTTGCGGGCTCTACCGCTTACGGCGTCCAC
CATCTTGACCAGATGGAGATAAAGCGCATCGAGAGTGAGAGCAAGTCGGA
GGTTGCTCGTATCCAGGGTGAGAGCAAGTCGGAGGTTGCTCGTATCCAGG
AGAAGGCGGCGACGGAGATTGCTCGTATCGAAAGCGACCGAGCGCGTATC
CAGGACAAGGCGGCGACGGAGATTGCTAGTATCGAAAGCGACCGAGCGCG
TATCCAGGACAAGGCGGCGACGGAGATTGCTCATATCGAAAGCGACCGAA
AGTTGTCAGAGCTTTTCTGGAAGGCAGAGGTAGAGCGGTACAAGCACGAC
CTCCAACTTGCGCACACGGAAGACTATGAGCCCTATCAGGCGGCAGTTTC
GAAGACAAGAAATAAAACAAGGGGAGGAAACGGAGTATCCGAGGAGGATG
AGAAGAAGGGCTAG
back to top

protein sequence of NO06G03230.1

>NO06G03230.1-protein ID=NO06G03230.1-protein|Name=NO06G03230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MLWSSATKAGAMVWRGVVASRSGKGRVLRGAFSSATDTGARTSSRGESGK
PLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKRIESESKSEVARIQGESK
SEVARIQEKAATEIARIESDRARIQDKAATEIASIESDRARIQDKAATEI
AHIESDRKLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGG
NGVSEEDEKKG*
back to top
Synonyms
Publications