NO06G03170, NO06G03170 (gene) Nannochloropsis oceanica

Overview
NameNO06G03170
Unique NameNO06G03170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length811
Alignment locationchr6:893257..894067 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:893257..894067 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO06G03170 vs. NCBI_GenBank
Match: EWM20145.1 (hypothetical protein Naga_101508g3 [Nannochloropsis gaditana])

HSP 1 Score: 97.1 bits (240), Expect = 7.200e-17
Identity = 99/208 (47.60%), Postives = 115/208 (55.29%), Query Frame = 0
Query:    1 MLWSSATKAGAMVWRGVVASRSGKVAYCNAFWKEGLVAIGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKRIESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEK 209
            ML     KAGAM  RG                   L   GKGRVLRG F S   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ EIK IES++                            XXXXXXXXXXXXXXXXXXXXXXXX+SE+FWKAEVER+K ++QLA+T+DYEPYQAA+   R K  G  G+ E++E+
Sbjct:   37 MLRRFTAKAGAMARRG-----------------STLPGPGKGRVLRGGFYSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEIKYIESKA----------------------AAEIAQXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKRKKRGGTGGLEEKEEE 205          
BLAST of NO06G03170 vs. NCBI_GenBank
Match: EWM20146.1 (hypothetical protein Naga_101508g1 [Nannochloropsis gaditana])

HSP 1 Score: 97.1 bits (240), Expect = 7.200e-17
Identity = 89/169 (52.66%), Postives = 105/169 (62.13%), Query Frame = 0
Query:   40 GKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKRIESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEK 209
            GKGRVLRG F S   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ EIK IES++                            XXXXXXXXXXXXXXXXXXXXXXXX+SE+FWKAEVER+K ++QLA+T+DYEPYQAA+   R K  G  G+ E++E+
Sbjct:    7 GKGRVLRGGFYSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEIKYIESKA----------------------AAEIAQXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKRKKRGGTGGLEEKEEE 153          
BLAST of NO06G03170 vs. NCBI_GenBank
Match: EWM20057.1 (hypothetical protein Naga_102002g2 [Nannochloropsis gaditana])

HSP 1 Score: 90.1 bits (222), Expect = 8.700e-15
Identity = 77/213 (36.15%), Postives = 92/213 (43.19%), Query Frame = 0
Query:    1 MLWSSATKAGAMVWRGVVASRSGKVAYCNAFWKEGLVAIGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQ----MEIKRIESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEKK 210
            ML     KAGAM  RG                   L   GKGRVLRG FSS   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ     EIK ++S++                                                    +SE+FWKAEVER+K ++QLA T+DYEPYQAA+   R K RGG   SEE E++
Sbjct:   19 MLRRFTAKAGAMARRG-----------------STLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSKA----------------------------------------AAEIARVEDKRAMSEVFWKAEVERFKREVQLAFTQDYEPYQAALVDKRKK-RGGTSGSEEKEEE 173          
BLAST of NO06G03170 vs. NCBI_GenBank
Match: EWM20009.1 (hypothetical protein Naga_102330g1 [Nannochloropsis gaditana])

HSP 1 Score: 89.7 bits (221), Expect = 1.100e-14
Identity = 105/212 (49.53%), Postives = 121/212 (57.08%), Query Frame = 0
Query:    1 MLWSSATKAGAMVWRGVVASRSGKVAYCNAFWKEGLVAIGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQ----MEIKRIESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEK 209
            ML     KAGAM  RG                   L   GKGRVLRG FSS   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ     EIK ++S +                   XXXXXXXXXXXXXXXXX  XXXXXXXXXXXXXX+SE+FWKAEVER K ++QLA+T+DYEPYQAA+   R K  G  G+ E++E+
Sbjct:   19 MLRRFTAKAGAMARRG-----------------STLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSRA---------------AAEIXXXXXXXXXXXXXXXXXEDXXXXXXXXXXXXXXMSEVFWKAEVERIKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEE 198          
BLAST of NO06G03170 vs. NCBI_GenBank
Match: EWM20082.1 (hypothetical protein Naga_101888g1 [Nannochloropsis gaditana])

HSP 1 Score: 89.0 bits (219), Expect = 1.900e-14
Identity = 109/175 (62.29%), Postives = 127/175 (72.57%), Query Frame = 0
Query:   41 KGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQ----MEIKRIESES---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEK 209
            KGRVLRG FSS   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ     EIK ++S++      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +SE+FWKAEVER+K ++QLA+T+DYEPYQAA+   R K  G  G+ E++E+
Sbjct:   64 KGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSKAAAEIAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKRKKRGGTGGLEEKEEE 238          
BLAST of NO06G03170 vs. NCBI_GenBank
Match: EWM20060.1 (hypothetical protein Naga_101993g1 [Nannochloropsis gaditana])

HSP 1 Score: 85.9 bits (211), Expect = 1.600e-13
Identity = 119/209 (56.94%), Postives = 130/209 (62.20%), Query Frame = 0
Query:    1 MLWSSATKAGAMVWRGVVASRSGKVAYCNAFWKEGLVAIGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKRIESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEKK 210
            ML     KAGAM  RG                   L   GKGRVLRG FSS   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ       +E        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  E+FWKAEVER+K ++QLA T+DYEPYQAA+   R KTRGG   SEE E++
Sbjct:   79 MLRRFTAKAGAMARRG-----------------STLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQ-------TEMATEIKYIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMFWKAEVERFKREVQLAFTQDYEPYQAALVDKR-KTRGGTSGSEEKEEE 262          
BLAST of NO06G03170 vs. NCBI_GenBank
Match: EWM20119.1 (hypothetical protein Naga_101718g2 [Nannochloropsis gaditana])

HSP 1 Score: 84.3 bits (207), Expect = 4.800e-13
Identity = 127/223 (56.95%), Postives = 140/223 (62.78%), Query Frame = 0
Query:    1 MLWSSATKAGAMVWRGVVASRSGKVAYCNAFWKEGLVAIGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQ----MEIKRIESES----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEKK 210
            ML     KAGAM  RG                   L   GKGRVLRG F S   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ     EIK IES++          XXXXXXXXXXX   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+SE+FWKAEVER+K ++QLA T+DYEPYQAA+   R K RGG   SEE E++
Sbjct:   82 MLRRFTAKAGAMARRG-----------------STLPGPGKGRVLRGGFYSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYIESKAAAEIXXXXXXXXXXXXXXXXXEDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAFTQDYEPYQAALVDKRKK-RGGISGSEEKEEE 286          
BLAST of NO06G03170 vs. NCBI_GenBank
Match: EWM20114.1 (hypothetical protein Naga_101734g1 [Nannochloropsis gaditana])

HSP 1 Score: 70.1 bits (170), Expect = 9.400e-9
Identity = 59/170 (34.71%), Postives = 70/170 (41.18%), Query Frame = 0
Query:   40 GKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKRIESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEKK 210
            GKGRVLRG FSS   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ E                                                            ++     AEVER+K ++QLA T+DYEPYQAA+   R K RGG   SEE E++
Sbjct:  105 GKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTE------------------------------------------------------------MAPEIKYAEVERFKREVQLAFTQDYEPYQAALVDKRKK-RGGTSGSEEKEEE 213          
BLAST of NO06G03170 vs. NCBI_GenBank
Match: EWM20066.1 (hypothetical protein Naga_101980g1 [Nannochloropsis gaditana])

HSP 1 Score: 69.7 bits (169), Expect = 1.200e-8
Identity = 92/208 (44.23%), Postives = 109/208 (52.40%), Query Frame = 0
Query:    1 MLWSSATKAGAMVWRGVVASRSGKVAYCNAFWKEGLVAIGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKRIESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEK 209
            ML     KAGAM  RG                   L   GKGRVLRG FSS   TG  TS+  E GK     +Q IG V  VAG+TA  V   DQ EIK ++S++                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXX            +K ++QLA+T+DYEPYQAA+   R K  G  G+ E++E+
Sbjct:  100 MLRRFTAKAGAMARRG-----------------STLPGPGKGRVLRGGFSSTAHTGPGTSNGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEIKYVQSKA----------------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEE 268          
BLAST of NO06G03170 vs. NCBI_GenBank
Match: EWM19993.1 (hypothetical protein Naga_102410g1 [Nannochloropsis gaditana])

HSP 1 Score: 68.9 bits (167), Expect = 2.100e-8
Identity = 95/209 (45.45%), Postives = 110/209 (52.63%), Query Frame = 0
Query:    1 MLWSSATKAGAMVWRGVVASRSGKVAYCNAFWKEGLVAIGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKRIESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEKK 210
            ML     KAGAM  RG                   L   GKGRVLRG FSS   TG  TS+  E GK     +Q IG V  VAG+TA  V   DQ EIK ++S++                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXX            +K ++QLA+T+DYEPYQAA+   R K RGG   SEE E++
Sbjct:   19 MLRRFTAKAGAMARRG-----------------STLPGPGKGRVLRGPFSSTAHTGPGTSNGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEIKYVQSKA----------------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKREVQLAYTQDYEPYQAALVDKRKK-RGGTSGSEEKEEE 187          
The following BLAST results are available for this feature:
BLAST of NO06G03170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 10
Match NameE-valueIdentityDescription
EWM20145.17.200e-1747.60hypothetical protein Naga_101508g3 [Nannochloropsi... [more]
EWM20146.17.200e-1752.66hypothetical protein Naga_101508g1 [Nannochloropsi... [more]
EWM20057.18.700e-1536.15hypothetical protein Naga_102002g2 [Nannochloropsi... [more]
EWM20009.11.100e-1449.53hypothetical protein Naga_102330g1 [Nannochloropsi... [more]
EWM20082.11.900e-1462.29hypothetical protein Naga_101888g1 [Nannochloropsi... [more]
EWM20060.11.600e-1356.94hypothetical protein Naga_101993g1 [Nannochloropsi... [more]
EWM20119.14.800e-1356.95hypothetical protein Naga_101718g2 [Nannochloropsi... [more]
EWM20114.19.400e-934.71hypothetical protein Naga_101734g1 [Nannochloropsi... [more]
EWM20066.11.200e-844.23hypothetical protein Naga_101980g1 [Nannochloropsi... [more]
EWM19993.12.100e-845.45hypothetical protein Naga_102410g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL092nonsL092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR029ncniR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006159NSK006159Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03170.1NO06G03170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03170.1NO06G03170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03170 ID=NO06G03170|Name=NO06G03170|organism=Nannochloropsis oceanica|type=gene|length=811bp
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGT
TGTGGCTTCCCGTTCAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGG
AGGGCTTGGTGGCTATTGgtaaggggtgttgggaggggggggggggaacg
tttggtgcacgcgaccgcatactgcccgagggatgttggttcgtttttat
ctgcacgtctatctcgtttgaggtgcaatctgtgttgtgcggacaagggc
cggtgccaaggtgctcatgcacgagcgcattcatacacgccgacagGGAA
GGGACGCGTACTGCGAGGGGCGTTCTCCTCGGCTACCGACACGGGGGCGC
GCACGAGCAGTAGAGGGGAGTCTGGAAAGCCCTTGAAGGGAGATTACCAG
CCCATTGGTGTGGTGGCTGCGGTTGCGGGCTCTACCGCTTACGGCGTCCA
CCATCTTGACCAGATGGAGATAAAGCGCATCGAGAGTGAGAGCAAGTCGG
AGGTTGCTCGTATCCAGGAGAAGGCGGCGACGGAGGTTGCTCGTATTGAG
GGCGACTGTGCGCGAATCCAGGGTGAGAGCAAGTCGGAGGTTGCTCGTAT
CCAGGGTGAGAGCAAGTCGGAGATTGCTCGTATCGAAAGCGACCGAAAGT
TGTCAGAGCTTTTCTGGAAGGCAGAGGTAGAGCGGTACAAGCACGACCTC
CAACTTGCGCACACGGAAGACTATGAGCCCTATCAGGCGGCAGTTTCGAA
GACAAGAAATAAAACAAGGGGAGGAAACGGAGTATCCGAGGAGGATGAGA
AGAAGGGCTAG
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protein sequence of NO06G03170.1

>NO06G03170.1-protein ID=NO06G03170.1-protein|Name=NO06G03170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MLWSSATKAGAMVWRGVVASRSGKVAYCNAFWKEGLVAIGKGRVLRGAFS
SATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKR
IESESKSEVARIQEKAATEVARIEGDCARIQGESKSEVARIQGESKSEIA
RIESDRKLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGN
GVSEEDEKKG*
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Synonyms
Publications