NO06G02980, NO06G02980 (gene) Nannochloropsis oceanica

Overview
NameNO06G02980
Unique NameNO06G02980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2041
Alignment locationchr6:851783..853823 -

Link to JBrowse

Properties
Property NameValue
DescriptionCCR4-NOT transcription complex subunit 11
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:851783..853823 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0030014CCR4-NOT complex
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR019312DUF2363
Homology
[Close]
BLAST of NO06G02980 vs. NCBI_GenBank
Match: XP_005853748.1 (hypothetical protein NGA_0132402 [Nannochloropsis gaditana CCMP526] >EKU22608.1 hypothetical protein NGA_0132402 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 686.0 bits (1769), Expect = 8.500e-194
Identity = 354/498 (71.08%), Postives = 397/498 (79.72%), Query Frame = 0 
Query:    2 MAAASTTDPSSPQLVKQAELVQLLRLLNDESAPIEQGLRAFERHFPIPDRFRIGCGLCILLQDQLLTRPQRLVAFAILQDLYKSHPSGSVGNPFLPFFLAAFEQATADGGGGEDDLAALGLAEKLFVAELLLNPTGASEMRKESPQVLLARLRQRQGLESVELLQTRLVPALTALKKSYMGTPGAAQAMRGLRGLGVWPELRDPVPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAAPGTSLSQLGLEGEEDLRMLSLLSFEPEFVRPPPPVLEVGETEWIWLNPDYAPKLLWDVAMGQDDGKGAEVRELMAKAFKGPLVPQQQQQVLRELESDARLVHHCGLTPQRLPELVENNPMIAIECLLKLMGSSQKNEYLSALVNMEMSLHSMEVVNRLTTVVPLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLYIEVQAFCIEFSRIREAAGLFRLLKTLE 500
            M+AA     + PQL+KQ+E+V+LL LLNDE+A +E+ ++AFE  FP PDRFRIGCGLCI LQDQLL+R QRL+AFA+L  ++++HP GSVGNPFLPFFLAAFEQ    GG   DD AAL +AEK+FVAELLLNP+GA+ + +++P +LLARLRQRQ  E+VE+LQ RLVPAL ALK SY+ TP A +AM+GLRGLGVWP +RDPV G                                              +A PG SL  LGLEGEED+  LSL SFEP FVRPPPPVL V ETEWIWLNPDYA KL+WD AMG+DDGKGAEVRE+MAKAF+GPLVPQQQQQVLRELE DARL+H+CGLTPQ+LPELVENNPMIAIECLLKLM S  KNEYLSALVNMEMSLHSMEVVNRLTTVVPLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKII+VQDLYIEVQAFCIEFSRIREAAGLFRLLKTLE
Sbjct:    1 MSAAPPQSLAQPQLIKQSEVVRLLGLLNDETASVEKSIQAFEGDFPAPDRFRIGCGLCIFLQDQLLSRSQRLLAFALLARMHRNHPKGSVGNPFLPFFLAAFEQGPGSGGAAGDDTAALDMAEKIFVAELLLNPSGANVVFEDTPHLLLARLRQRQAKENVEVLQKRLVPALMALKSSYIDTPEAKEAMQGLRGLGVWPHVRDPVGG-----------------REGGVGVPGGMEEFKGGAGASEPAQHVQRYAMPGVSLYDLGLEGEEDMAALSLHSFEPAFVRPPPPVLGVAETEWIWLNPDYASKLMWDAAMGEDDGKGAEVREVMAKAFRGPLVPQQQQQVLRELEGDARLIHYCGLTPQKLPELVENNPMIAIECLLKLMSSVHKNEYLSALVNMEMSLHSMEVVNRLTTVVPLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIIHVQDLYIEVQAFCIEFSRIREAAGLFRLLKTLE 481
[Close]
BLAST of NO06G02980 vs. NCBI_GenBank
Match: EWM26299.1 (hypothetical protein Naga_100093g21 [Nannochloropsis gaditana])

HSP 1 Score: 661.0 bits (1704), Expect = 2.900e-186
Identity = 339/470 (72.13%), Postives = 376/470 (80.00%), Query Frame = 0 
Query:   30 DESAPIEQGLRAFERHFPIPDRFRIGCGLCILLQDQLLTRPQRLVAFAILQDLYKSHPSGSVGNPFLPFFLAAFEQATADGGGGEDDLAALGLAEKLFVAELLLNPTGASEMRKESPQVLLARLRQRQGLESVELLQTRLVPALTALKKSYMGTPGAAQAMRGLRGLGVWPELRDPVPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAAPGTSLSQLGLEGEEDLRMLSLLSFEPEFVRPPPPVLEVGETEWIWLNPDYAPKLLWDVAMGQDDGKGAEVRELMAKAFKGPLVPQQQQQVLRELESDARLVHHCGLTPQRLPELVENNPMIAIECLLKLMGSSQKNEYLSALVNMEMSLHSMEVVNRLTTVVPLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLYIEVQAFCIEFSRIREAAGLFRLLKTLE 500
            DE+A +E+ ++AFE  FP PDRFRIGCGLCI LQDQLL+R QRL+AFA+L  ++++HP GSVGNPFLPFFLAAFEQ    GG   DD AAL +AEK+FVAELLLNP+GA+ + +++P +LLARLRQRQ  E+VE+LQ RLVPAL ALK SY+ TP A +AM+GLRGLGVWP +RDPV G                                              +A PG SL  LGLEGEED+  LSL SFEP FVRPPPPVL V ETEWIWLNPDYA KL+WD AMG+DDGKGAEVRE+MAKAF+GPLVPQQQQQVLRELE DARL+H+CGLTPQ+LPELVENNPMIAIECLLKLM S  KNEYLSALVNMEMSLHSMEVVNRLTTVVPLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKII+VQDLYIEVQAFCIEFSRIREAAGLFRLLKTLE
Sbjct:   31 DETASVEKSIQAFEGDFPAPDRFRIGCGLCIFLQDQLLSRSQRLLAFALLARMHRNHPKGSVGNPFLPFFLAAFEQGPGSGGAAGDDTAALDMAEKIFVAELLLNPSGANVVFEDTPHLLLARLRQRQAKENVEVLQKRLVPALMALKSSYIDTPEAKEAMQGLRGLGVWPHVRDPVGG-----------------REGGVGVPGGMEEFKGGAGASEPAQHVQRYAMPGVSLYDLGLEGEEDMAALSLHSFEPAFVRPPPPVLGVAETEWIWLNPDYASKLMWDAAMGEDDGKGAEVREVMAKAFRGPLVPQQQQQVLRELEGDARLIHYCGLTPQKLPELVENNPMIAIECLLKLMSSVHKNEYLSALVNMEMSLHSMEVVNRLTTVVPLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIIHVQDLYIEVQAFCIEFSRIREAAGLFRLLKTLE 483
[Close]
BLAST of NO06G02980 vs. NCBI_GenBank
Match: CBJ49057.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 457.2 bits (1175), Expect = 6.500e-125
Identity = 271/494 (54.86%), Postives = 321/494 (64.98%), Query Frame = 0 
Query:   15 LVKQAELVQLLRLLNDESAPIEQGLRAFERHFPIPDRFRIGCGLCILLQDQLLTRPQRLVAFAILQDLYKSHPSGSVGNPFLPFFLAAFEQATADGGGGEDDLAALGLAEKLFVAELLLN-PTGASEMRKESPQVLLARLRQRQGLESVELLQTRLVPALTALKKSYMGTPGAAQAMRGLRGLGVWPELRDPVPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAAPGTSLSQLGLEGEEDLRM--------LSLLSFEPEFVRPPPPVLEVGETEWIWLNPDYAPKLLWDVAMGQDDGKGAEVRELMAKAFKGPLVPQQQQQVLRELESDARLVHHCGLTPQRLPELVENNPMIAIECLLKLMGSSQKNEYLSALVNMEMSLHSMEVVNRLTTVVPLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLYIEVQAFCIEFSRIREAAGLFRLLKTLE 500
            ++   EL  LL+LLNDE   +E   + F R F   D F++GC LCILL D LLT  QR+V+F+IL DLY++  +G+  NPFLPFFL A E+ T                E+ ++  LL + PT  +  RK + QV+     +    E+VE      VP L+AL++ Y        A+  LR  GV P L DP   S                                               AP T +  L L   +D+R+        LSL SFEPEF+RP PP+L + ++E +WLNPDYAP+LLWD +MGQD  KGAEVR++MAKAFKGPL+P QQQQVL EL+ DARLV+HCGLTP +LP+LVENNPMIAIECLLKLM SSQ  EYLSALVNM+MSLHSMEVVNRLTT V LPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV+DL+IEVQAFCIEFSRIREAAGLFRLLKTLE
Sbjct:    1 MLDSQELTPLLQLLNDEDDILENVAQKFHRTFTRNDHFKVGCALCILLCDNLLTHTQRVVSFSILCDLYRNDANGT--NPFLPFFLEAIEKGTDP-------------VERQYLVHLLCSPPTNRNSARKNALQVIAE--YEGTPAEAVE------VPDLSALRQLY---SEKNPAVPSLRTAGVRPVLADPSESS--------------NEVGSWLPPRPEEQVGRAPGGAALRGGVGGKREAP-TPIQPLTL---DDMRLSKGGRGGSLSLASFEPEFMRPVPPMLPIADSEVMWLNPDYAPRLLWDTSMGQDSSKGAEVRDVMAKAFKGPLLPTQQQQVLSELQGDARLVYHCGLTPFKLPDLVENNPMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVEDLFIEVQAFCIEFSRIREAAGLFRLLKTLE 450
[Close]
BLAST of NO06G02980 vs. NCBI_GenBank
Match: GAX95871.1 (Hypothetical protein PINS_003751 [Pythium insidiosum])

HSP 1 Score: 430.3 bits (1105), Expect = 8.500e-117
Identity = 256/487 (52.57%), Postives = 299/487 (61.40%), Query Frame = 0 
Query:   15 LVKQAELVQLLRLLNDESAPIEQGLRAFERHFPIPDRFRIGCGLCILLQDQLLTRPQRLVAFAILQDLYKSHPSGSVGNPFLPFFLAAFEQATADGGGGEDDLAALGLAEKLFVAELLLNPTGASEMRKESPQVLLARLRQRQGLESVELLQTRLVP-ALTALKKSYM-GTPGAAQAMRGLRGLGVWPELRDPVPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAAPGTSLSQLGLEGEEDLRMLSLLSFEPEFVRPPPPVLEVGETEWIWLNPDYAPKLLWDVAMGQDDGKGAEVRELMAKAFKGPLVPQQQQQVLRELESDARLVHHCGLTPQRLPELVENNPMIAIECLLKLMGSSQKNEYLSALVNMEMSLHSMEVVNRLTTVVPLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLYIEVQAFCIEFSRIREAAGLFRLLKTLE 500
            +++  EL  LL +LN++  P+EQ   AF R F   D F++GC +CILLQD LLT  QR+V F+IL DLY++  + +  NPFLP FL A E+ T                E  F+  LL +     E  K S + +L+ LR            +++ P  L AL+K Y   TP   Q    LRG G+    R+ V  S                                                 G SL   G  G      LSL  FEP+F+R PPP++E   TE IWLNPDY P LLWD  M +D   G E+RELMA AF GP +P QQQ+VL +LE+D +LV+HC LTPQRLP+LVENNPMIAIECLLKLM S+Q  EYLSALVNM+MSLHSMEVVNRLTT V LPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDL IEVQAFCIEFSRIREAAGLFRLLKTLE
Sbjct:    1 MLEARELRPLLTILNEDDKPLEQVSSAFSRTFTKNDHFKVGCTICILLQDNLLTSSQRIVGFSILCDLYRNEAAST--NPFLPVFLEALEKGTDP-------------CETKFLVHLLSSTPSNRETSKRSAKTILSELRAN---------SSQIPPFDLEALRKVYKEKTPPVPQ----LRGAGI----RNVVTDSELDLQEHLNTSANVHVPPNEVCMLNVPCAEELTIEEM------------GLSLDAAGAAGAPSAGSLSLQGFEPKFMRLPPPIMEPDMTELIWLNPDYCPTLLWDGTMFEDSSHGMELRELMAXAFVGPXIPSQQQKVLADLEADPKLVYHCSLTPQRLPDLVENNPMIAIECLLKLMSSNQITEYLSALVNMDMSLHSMEVVNRLTTAVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLIIEVQAFCIEFSRIREAAGLFRLLKTLE 443
[Close]
BLAST of NO06G02980 vs. NCBI_GenBank
Match: XP_008902112.1 (hypothetical protein PPTG_09021 [Phytophthora parasitica INRA-310] >ETI52033.1 hypothetical protein F443_04750 [Phytophthora parasitica P1569] >ETK91877.1 hypothetical protein L915_04638 [Phytophthora parasitica] >ETL45276.1 hypothetical protein L916_04593 [Phytophthora parasitica] >ETL98458.1 hypothetical protein L917_04477 [Phytophthora parasitica] >ETM51623.1 hypothetical protein L914_04586 [Phytophthora parasitica] >ETN12096.1 hypothetical protein PPTG_09021 [Phytophthora parasitica INRA-310] >ETO80763.1 hypothetical protein F444_04802 [Phytophthora parasitica P1976] >ETP21805.1 hypothetical protein F441_04751 [Phytophthora parasitica CJ01A1] >ETP49682.1 hypothetical protein F442_04829 [Phytophthora parasitica P10297])

HSP 1 Score: 407.1 bits (1045), Expect = 7.700e-110
Identity = 248/481 (51.56%), Postives = 292/481 (60.71%), Query Frame = 0 
Query:   20 ELVQLLRLLNDESAPIEQGLRAFERHFPIPDRFRIGCGLCILLQDQLLTRPQRLVAFAILQDLYKSHPSGSVGNPFLPFFLAAFEQATADGGGGEDDLAALGLAEKLFVAELLLNPTGASEMRKESPQVLLARLRQRQGLESVELLQTRLVPALTALKKSYM-GTPGAAQAMRGLRGLGVWPELRDPVPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAAPGTSLSQLGLEGEEDLRMLSLLSFEPEFVRPPPPVLEVGETEWIWLNPDYAPKLLWDVAMGQDDGKGAEVRELMAKAFKGPLVPQQQQQVLRELESDARLVHHCGLTPQRLPELVENNPMIAIECLLKLMGSSQKNEYLSALVNMEMSLHSMEVVNRLTTVVPLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLYIEVQAFCIEFSRIREAAGLFRLLKTLE 500
            EL  LL +LN++  P+EQ    F R F   D F++GC +CILLQD LLT  QR+V+F+IL DLY++   G+  NPFLP FL A E+       G D      L EK F+   LL+P  A E  K++ + ++A LR     + V+         + A++ SY+  TP   Q     R  G+   + D                                                XX                       LLSFEP F+R PPP+LE   TE IWLNPDY P +LWD  M  D   G  +RELM +AF+ PLVP  QQ+VL ELE+D +LV+HC LTPQRLP+LVENNPM+AI+CLLKLM S+Q  EYLSALVNM+MSLHSMEVVNRLTT V LPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDL IEVQAFCIEFSRIREAAGLFRLLKTLE
Sbjct:    6 ELRPLLAILNEDDKPLEQVASMFLRTFTKNDHFKVGCTICILLQDNLLTSSQRIVSFSILSDLYRN--EGATTNPFLPVFLDALEK-------GSD------LCEKKFIVH-LLSPPSARESSKKTAKQMMAELRANPS-QPVQF-------DVEAMRNSYLERTPSVPQ----FRAAGIRNVVTD-----TEFDLQEHVNNGANLQVPPNEVSSLNLPCFEALSLEEMSLLSDXXXXXXXXXXXXXXXXXXXXXXXXXLLSFEPTFMRLPPPILEPDMTELIWLNPDYCPTVLWDSTM-LDSAHGIALRELMLRAFQKPLVPSLQQKVLAELEADPKLVYHCSLTPQRLPDLVENNPMLAIDCLLKLMSSNQITEYLSALVNMDMSLHSMEVVNRLTTAVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLIIEVQAFCIEFSRIREAAGLFRLLKTLE 452
[Close]
BLAST of NO06G02980 vs. NCBI_GenBank
Match: KUF64508.1 (CCR4-NOT transcription complex subunit 11 [Phytophthora nicotianae])

HSP 1 Score: 407.1 bits (1045), Expect = 7.700e-110
Identity = 249/481 (51.77%), Postives = 293/481 (60.91%), Query Frame = 0 
Query:   20 ELVQLLRLLNDESAPIEQGLRAFERHFPIPDRFRIGCGLCILLQDQLLTRPQRLVAFAILQDLYKSHPSGSVGNPFLPFFLAAFEQATADGGGGEDDLAALGLAEKLFVAELLLNPTGASEMRKESPQVLLARLRQRQGLESVELLQTRLVPALTALKKSYM-GTPGAAQAMRGLRGLGVWPELRDPVPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAAPGTSLSQLGLEGEEDLRMLSLLSFEPEFVRPPPPVLEVGETEWIWLNPDYAPKLLWDVAMGQDDGKGAEVRELMAKAFKGPLVPQQQQQVLRELESDARLVHHCGLTPQRLPELVENNPMIAIECLLKLMGSSQKNEYLSALVNMEMSLHSMEVVNRLTTVVPLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLYIEVQAFCIEFSRIREAAGLFRLLKTLE 500
            EL  LL +LN++  P+EQ    F R F   D F++GC +CILLQD LLT  QR+V+F+IL DLY++   G+  NPFLP FL A E+       G D      L EK F+   LL+P  A E  K++ + ++A LR     + V+         + A++ SY+  TP   Q     R  G+   + D                                               XXX                       LLSFEP F+R PPP+LE   TE IWLNPDY P +LWD  M  D   G  +RELM +AF+ PLVP  QQ+VL ELE+D +LV+HC LTPQRLP+LVENNPM+AI+CLLKLM S+Q  EYLSALVNM+MSLHSMEVVNRLTT V LPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDL IEVQAFCIEFSRIREAAGLFRLLKTLE
Sbjct:    6 ELRPLLAILNEDDKPLEQVASMFLRTFTKNDHFKVGCTICILLQDNLLTSSQRIVSFSILSDLYRN--EGATTNPFLPVFLDALEK-------GSD------LCEKKFIVH-LLSPPSARESSKKTAKQMMAELRANPS-QPVQF-------DVEAMRNSYLERTPSVPQ----FRAAGIRNVVTD-----TEFDLQEHVNNGANLHVPPNEVSSLNLPCFEALSLEEMSLLSXXXXXXXXXXXXXXXXXXXXXXXXXXLLSFEPTFMRLPPPILEPDMTELIWLNPDYCPTVLWDSTM-LDSAHGIALRELMLRAFQKPLVPSLQQKVLAELEADPKLVYHCSLTPQRLPDLVENNPMLAIDCLLKLMSSNQITEYLSALVNMDMSLHSMEVVNRLTTAVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLIIEVQAFCIEFSRIREAAGLFRLLKTLE 452
[Close]
BLAST of NO06G02980 vs. NCBI_GenBank
Match: XP_002900382.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY60175.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 398.3 bits (1022), Expect = 3.600e-107
Identity = 243/469 (51.81%), Postives = 285/469 (60.77%), Query Frame = 0 
Query:   35 IEQGLRAFERHFPIPDRFRIGCGLCILLQDQLLTRPQRLVAFAILQDLYKSHPSGSVGNPFLPFFLAAFEQATADGGGGEDDLAALGLAEKLFVAELLLNPTGASEMRKESPQVLLARLRQRQGLESVELLQTRLVPALTALKKSYM-GTPGAAQAMRGLRGLGVWPELRDPVPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAAPGT---SLSQLGLEGEEDLRMLSLLSFEPEFVRPPPPVLEVGETEWIWLNPDYAPKLLWDVAMGQDDGKGAEVRELMAKAFKGPLVPQQQQQVLRELESDARLVHHCGLTPQRLPELVENNPMIAIECLLKLMGSSQKNEYLSALVNMEMSLHSMEVVNRLTTVVPLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLYIEVQAFCIEFSRIREAAGLFRLLKTLE 500
            +EQ    F R F   D F++GC +CILLQD LLT  QR+V+F+IL DLY++   G+  NPFLP FL A E+       G D      L EK F+   LL+PTG  E  K++ + ++A LR     + V+         + A++ SY+  TP   Q     R  G+   + D                                                   A P T                   SLLSFEP F+R PPP+L+   TE IWLNPDY P +LWD  M  D   G  +RELM +AF+ PLVP  QQ+VL ELE+D +LV+HC LTPQRLP+LVENNPM+AI+CLLKLM S+Q  EYLSALVNM+MSLHSMEVVNRLTT V LPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDL IEVQAFCIEFSRIREAAGLFRLLKTLE
Sbjct:    1 MEQVTSMFLRTFTKNDHFKVGCTICILLQDNLLTSSQRIVSFSILSDLYRN--EGATTNPFLPVFLDALEK-------GSD------LCEKKFIVH-LLSPTGNRESGKKTAKQMMAELRANPS-QPVQF-------DVEAMRSSYLERTPSVPQ----FRAAGIRNVVTD--------TEFDLQEHVNNGANLQVPPNEVSSLNLPCFEALSLEEMSLLSDAEPSTXXXXXXXXXXXXXXXXXXXSLLSFEPTFMRLPPPILKPDMTELIWLNPDYCPTVLWDSTM-LDSAHGIALRELMLRAFQKPLVPSLQQKVLAELEADPKLVYHCSLTPQRLPDLVENNPMLAIDCLLKLMSSNQITEYLSALVNMDMSLHSMEVVNRLTTAVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLIIEVQAFCIEFSRIREAAGLFRLLKTLE 432
[Close]
BLAST of NO06G02980 vs. NCBI_GenBank
Match: CCA16653.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 397.5 bits (1020), Expect = 6.100e-107
Identity = 244/489 (49.90%), Postives = 298/489 (60.94%), Query Frame = 0 
Query:   15 LVKQAELVQLLRLLNDESAPIEQGLRAFERHFPIPDRFRIGCGLCILLQDQLLTRPQRLVAFAILQDLYKSHPSGSVGNPFLPFFLAAFEQATADGGGGEDDLAALGLAEKLFVAELLLNPTGASEMRKESPQVLLARLRQRQGLESVELLQTRLVPALTALKKSYM-GTPGAAQAMRGLRGLGVWPELRDPVPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAAPGTSLSQLGLEGEEDLR---MLSLLSFEPEFVRPPPPVLEVGETEWIWLNPDYAPKLLWDVAMGQDDGKGAEVRELMAKAFKGPLVPQQQQQVLRELESDARLVHHCGLTPQRLPELVENNPMIAIECLLKLMGSSQKNEYLSALVNMEMSLHSMEVVNRLTTVVPLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLYIEVQAFCIEFSRIREAAGLFRLLKTLE 500
            +++  EL  LL +L++   P+EQ   AF + +   D FRIGC + ILLQD LLT  QR + F+IL DLY++  S ++ NPFLP FL A+E+       G D      + EK F++  LL+   + E+ K+S   +L   R        +  QT     +  L+  Y   TP   Q    LR  G+    R+ +  S                                                   ++ +   E +   +    LSLLSFEP F+RPPP VLE   +E IWLNPDY P +LWD  M +D     E+R+LM+KAF  PL+P  QQ+VL EL++D ++V+H  LTPQRLP+LVENNPMIAIECLLKLM S+Q  EYLSALVNM+MSLHSMEVVNRLTT V LPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDL IEVQAFCIEFSRIREAAGLFRLLKTLE
Sbjct:   65 MLEMRELRPLLAILSESDKPLEQVTNAFLKTYTKNDHFRIGCIVSILLQDNLLTSAQRFIGFSILFDLYRNEGSHAI-NPFLPIFLNAYEK-------GND------VYEKKFLSH-LLSSASSRELNKKSANAVLQEFRS-------DTTQTVHAIDVDKLQAWYQERTPAVPQ----LRASGI----RNVIADSELDYQEHMNNGNCLQLAPNEVSLANIPCLDEW-------------------TMEEFSEEKDASGKTNGYLSLLSFEPPFMRPPPSVLEPEMSELIWLNPDYCPSVLWDDTMFEDASHELELRDLMSKAFLNPLIPSHQQKVLAELDADPKIVYHSALTPQRLPDLVENNPMIAIECLLKLMSSNQITEYLSALVNMDMSLHSMEVVNRLTTAVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLIIEVQAFCIEFSRIREAAGLFRLLKTLE 504
[Close]
BLAST of NO06G02980 vs. NCBI_GenBank
Match: XP_024574819.1 (protein [Plasmopara halstedii] >CEG38450.1 protein [Plasmopara halstedii])

HSP 1 Score: 394.0 bits (1011), Expect = 6.700e-106
Identity = 238/481 (49.48%), Postives = 284/481 (59.04%), Query Frame = 0 
Query:   20 ELVQLLRLLNDESAPIEQGLRAFERHFPIPDRFRIGCGLCILLQDQLLTRPQRLVAFAILQDLYKSHPSGSVGNPFLPFFLAAFEQATADGGGGEDDLAALGLAEKLFVAELLLNPTGASEMRKESPQVLLARLRQRQGLESVELLQTRLVPALTALKKSYM-GTPGAAQAMRGLRGLGVWPELRDPVPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAAPGTSLSQLGLEGEEDLRMLSLLSFEPEFVRPPPPVLEVGETEWIWLNPDYAPKLLWDVAMGQDDGKGAEVRELMAKAFKGPLVPQQQQQVLRELESDARLVHHCGLTPQRLPELVENNPMIAIECLLKLMGSSQKNEYLSALVNMEMSLHSMEVVNRLTTVVPLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLYIEVQAFCIEFSRIREAAGLFRLLKTLE 500
            EL  LL +LN++  P++Q    F R F   D F++GC +CILLQD LLT  QR V+F+IL +LY++   G+  NPFLP FL A E+       G D        E+ F+  LL   + + +  K++ + ++A  R     + V+         + +LK SY+  TP   Q     R  G+   + D                                                                          LS EP F+R PPP+LE   TE IWLNPDY P LLWD  M  D   G  +RELM +AF+ PLVP  QQ+VL ELE+D +LV+HC LTPQRLP+LVENNPM+AI+CLLKLM S+Q  EYLSALVNM+MSLHSMEVVNRLTT V LPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDL IEVQAFCIEFSRIREAAGLFRLLKTLE
Sbjct:    6 ELRPLLAILNEDDKPLDQVSSMFLRTFTKNDHFKVGCTICILLQDNLLTSSQRFVSFSILSELYRN--EGTSTNPFLPVFLDALEK-------GSDQ------CEQKFIIHLLSQTSASRDSSKKTAKQMIAEFRANPS-QPVQF-------DIQSLKSSYLERTPDVPQ----FRAAGIRNVVTD--------TEFDLQEHVNNGANLQVTPNEVSSLNLPCFEALSLEEMSLLSDFETSXXXXXXXXXXXXXXXXXXXLSLEPTFMRLPPPILEPDMTELIWLNPDYCPTLLWDATM-LDSTHGIALRELMLRAFQKPLVPSLQQKVLAELEADPKLVYHCSLTPQRLPDLVENNPMLAIDCLLKLMSSNQITEYLSALVNMDMSLHSMEVVNRLTTAVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLIIEVQAFCIEFSRIREAAGLFRLLKTLE 450
[Close]
BLAST of NO06G02980 vs. NCBI_GenBank
Match: XP_008902113.1 (hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETI52034.1 hypothetical protein, variant [Phytophthora parasitica P1569] >ETK91878.1 hypothetical protein, variant [Phytophthora parasitica] >ETL45277.1 hypothetical protein, variant [Phytophthora parasitica] >ETL98459.1 hypothetical protein, variant [Phytophthora parasitica] >ETM51624.1 hypothetical protein, variant [Phytophthora parasitica] >ETN12097.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETO80764.1 hypothetical protein, variant [Phytophthora parasitica P1976] >ETP21806.1 hypothetical protein, variant [Phytophthora parasitica CJ01A1] >ETP49683.1 hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 391.3 bits (1004), Expect = 4.400e-105
Identity = 239/459 (52.07%), Postives = 279/459 (60.78%), Query Frame = 0 
Query:   42 FERHFPIPDRFRIGCGLCILLQDQLLTRPQRLVAFAILQDLYKSHPSGSVGNPFLPFFLAAFEQATADGGGGEDDLAALGLAEKLFVAELLLNPTGASEMRKESPQVLLARLRQRQGLESVELLQTRLVPALTALKKSYM-GTPGAAQAMRGLRGLGVWPELRDPVPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAAPGTSLSQLGLEGEEDLRMLSLLSFEPEFVRPPPPVLEVGETEWIWLNPDYAPKLLWDVAMGQDDGKGAEVRELMAKAFKGPLVPQQQQQVLRELESDARLVHHCGLTPQRLPELVENNPMIAIECLLKLMGSSQKNEYLSALVNMEMSLHSMEVVNRLTTVVPLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLYIEVQAFCIEFSRIREAAGLFRLLKTLE 500
            F R F   D F++GC +CILLQD LLT  QR+V+F+IL DLY++   G+  NPFLP FL A E+       G D      L EK F+   LL+P  A E  K++ + ++A LR     + V+         + A++ SY+  TP   Q     R  G+   + D                                                XX                       LLSFEP F+R PPP+LE   TE IWLNPDY P +LWD  M  D   G  +RELM +AF+ PLVP  QQ+VL ELE+D +LV+HC LTPQRLP+LVENNPM+AI+CLLKLM S+Q  EYLSALVNM+MSLHSMEVVNRLTT V LPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDL IEVQAFCIEFSRIREAAGLFRLLKTLE
Sbjct:    2 FLRTFTKNDHFKVGCTICILLQDNLLTSSQRIVSFSILSDLYRN--EGATTNPFLPVFLDALEK-------GSD------LCEKKFIVH-LLSPPSARESSKKTAKQMMAELRANPS-QPVQF-------DVEAMRNSYLERTPSVPQ----FRAAGIRNVVTD-----TEFDLQEHVNNGANLQVPPNEVSSLNLPCFEALSLEEMSLLSDXXXXXXXXXXXXXXXXXXXXXXXXXLLSFEPTFMRLPPPILEPDMTELIWLNPDYCPTVLWDSTM-LDSAHGIALRELMLRAFQKPLVPSLQQKVLAELEADPKLVYHCSLTPQRLPDLVENNPMLAIDCLLKLMSSNQITEYLSALVNMDMSLHSMEVVNRLTTAVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLIIEVQAFCIEFSRIREAAGLFRLLKTLE 426
The following BLAST results are available for this feature:
BLAST of NO06G02980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853748.18.500e-19471.08hypothetical protein NGA_0132402 [Nannochloropsis ... [more]
EWM26299.12.900e-18672.13hypothetical protein Naga_100093g21 [Nannochlorops... [more]
CBJ49057.16.500e-12554.86conserved unknown protein [Ectocarpus siliculosus][more]
GAX95871.18.500e-11752.57Hypothetical protein PINS_003751 [Pythium insidios... [more]
XP_008902112.17.700e-11051.56hypothetical protein PPTG_09021 [Phytophthora para... [more]
KUF64508.17.700e-11051.77CCR4-NOT transcription complex subunit 11 [Phytoph... [more]
XP_002900382.13.600e-10751.81conserved hypothetical protein [Phytophthora infes... [more]
CCA16653.16.100e-10749.90conserved hypothetical protein [Albugo laibachii N... [more]
XP_024574819.16.700e-10649.48protein [Plasmopara halstedii] >CEG38450.1 protein... [more]
XP_008902113.14.400e-10552.07hypothetical protein, variant [Phytophthora parasi... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR029ncniR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000156NSK000156Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02980.1NO06G02980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597532gene_6630Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100093g21gene4212Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02980.1NO06G02980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02980 ID=NO06G02980|Name=NO06G02980|organism=Nannochloropsis oceanica|type=gene|length=2041bp
CGAACTTTGGCACTTCCGAAGGAGTCCGAGTCCGACGTGTCGTTGAACGC
GTGTGCCTTCGATGCTACTAAACCATTGCCTTGTTTCTCACCACTTTCAG
CACTCTCAACCAGATAATCGACTCTTGCATAGGTAAATACAATAAGTGGG
TAGGGCATACGGCAACGAGAGTCAGCAGTTAAGTATAACAACGCCTCGGC
TAGAAGAAGGAAGCAACGCAGGAGAAGCCTTGATTATGATGGCAGCAGCA
TCGACCACCGACCCGTCCTCGCCGCAGCTGGTGAAGCAGGCCGAATTAGT
ACAGTTGTTGAGACTCTTAAATgtacgtagcgtgagcttgtcggttgtgc
tgctccagcaacacattgctgcctgccccaagcaatcccttccctcctcc
ctctgctaatctctcttcataattcattgttaccgttcttctttttaaac
ggcactgaaatgttgtacatacttcccccatccattcgtttcatgtgcga
aaacggtatggatcaggagtttaactcatcctctccccttctttcactcc
aacccggccccccttcctaccctcacccttcaacagGATGAGAGCGCCCC
CATCGAGCAGGGCCTCCGAGCCTTTGAGCGTCACTTCCCCATACCTGACC
GTTTCAGAATCGGCTGTGGCCTCTGCATCCTACTGCAAGACCAACTTCTC
ACTCGACCACAGCGACTCGTCGCCTTTGCCATTCTTCAAGACTTGTACAA
ATCCCACCCAAGCGGCAGCGTGGGCAACCCCTTCCTCCCCTTCTTCCTTG
CGGCCTTCGAACAAGCCACCGCCGATGGAGGAGGTGGAGAAGATGATTTG
GCTGCCCTTGGGCTAGCGGAAAAGCTCTTTGTGGCTGAGTTGCTGCTGAA
CCCTACGGGCGCAAGTGAGATGCGTAAGGAAAGCCCGCAAGTGTTGCTTG
CTCGCTTACGGCAACGACAGGGGTTGGAAAGCGTGGAGCTGCTGCAAACA
CGTTTGGTCCCAGCATTGACAGCCTTAAAGAAATCATACATGGGCACGCC
TGGCGCGGCACAAGCCATGCGAGGGTTGAGAGGGTTGGGTGTGTGGCCGG
AACTAAGAGATCCAGTGCCAGGCAGCGGCGGGCGGCGGGGAGGAGGGAAT
GGAGGGATTGATGACTTTGGTACTGCTATGGCGGCAGGGGGGACAGCAGG
CGCATTGGAACAGCGAAATCAGCAGCAACAGCAACAAGAGCAGCAGCAGC
AGTTGTCGCAGCATGCAGCGCCTGGGACTTCATTAAGTCAATTAGGGTTG
GAAGGGGAGGAGGATTTGAGGATGCTGTCGCTATTGAGTTTTGAGCCTGA
ATTTGTGAGGCCGCCCCCGCCAGTGCTGGAAGTGGGGGAGACAGAGTGGA
TTTGGTTGAATCCTGATTATGCCCCGAAGCTGCTGTGGGACGTGGCGATG
GGTCAGGATGATGGCAAGGGGGCCGAGGTGAGAGAACTGATGGCGAAGGC
CTTTAAGGGTCCCTTGGTCCCGCAGCAGCAGCAGCAGGTGTTAAGGGAAC
TGGAGAGCGACGCGAGGCTCGTGCATCATTGTGGTTTGACCCCGCAGAGA
CTACCGGAGTTGGTAGAGAACAACCCGATGATTGCGATTGAGTGTCTGTT
GAAGCTGATGGGTTCGAGTCAGAAGAATGAGTATTTATCGGCGTTGGTCA
ATATGGAGATGTCGCTACATTCGATGGAGGTGGTGAACAGGCTTACGACG
GTAGTTCCCTTGCCGACCGAATTCATTCATTTGTACATCTCGAATTGTAT
CTCGTCCTGTGAGAACATCAAAGATAAGTACATGCAGAACCGCCTGGTTA
GGTTGGTGTGTGTCTTCTTGCAGAGCCTGATACGGAATAAGATTATAAAT
GTCCAGGATCTCTACATTGAGGTGCAGGCGTTCTGCATCGAGTTTTCCCG
GATTCGGGAGGCGGCAGGTTTGTTCCGGTTGCTCAAGACGCTGGAATGAG
AAAATGAAAGAGAAGAAGGAAAAACATGAGAATTTCCCCCT
back to top

protein sequence of NO06G02980.1

>NO06G02980.1-protein ID=NO06G02980.1-protein|Name=NO06G02980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MMAAASTTDPSSPQLVKQAELVQLLRLLNDESAPIEQGLRAFERHFPIPD
RFRIGCGLCILLQDQLLTRPQRLVAFAILQDLYKSHPSGSVGNPFLPFFL
AAFEQATADGGGGEDDLAALGLAEKLFVAELLLNPTGASEMRKESPQVLL
ARLRQRQGLESVELLQTRLVPALTALKKSYMGTPGAAQAMRGLRGLGVWP
ELRDPVPGSGGRRGGGNGGIDDFGTAMAAGGTAGALEQRNQQQQQQEQQQ
QLSQHAAPGTSLSQLGLEGEEDLRMLSLLSFEPEFVRPPPPVLEVGETEW
IWLNPDYAPKLLWDVAMGQDDGKGAEVRELMAKAFKGPLVPQQQQQVLRE
LESDARLVHHCGLTPQRLPELVENNPMIAIECLLKLMGSSQKNEYLSALV
NMEMSLHSMEVVNRLTTVVPLPTEFIHLYISNCISSCENIKDKYMQNRLV
RLVCVFLQSLIRNKIINVQDLYIEVQAFCIEFSRIREAAGLFRLLKTLE*
back to top
Synonyms
Publications