NO06G02960, NO06G02960 (gene) Nannochloropsis oceanica

Overview
NameNO06G02960
Unique NameNO06G02960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length675
Alignment locationchr6:848687..849361 -

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Properties
Property NameValue
DescriptionPhosphopantothenoylcysteine decarboxylase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:848687..849361 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR036551Flavin_trans-like
IPR003382Flavoprotein
Homology
BLAST of NO06G02960 vs. NCBI_GenBank
Match: XP_008875077.1 (hypothetical protein H310_10456 [Aphanomyces invadans] >ETV96285.1 hypothetical protein H310_10456 [Aphanomyces invadans])

HSP 1 Score: 210.7 bits (535), Expect = 4.700e-51
Identity = 108/196 (55.10%), Postives = 139/196 (70.92%), Query Frame = 0
Query:   22 DIPGQRRPHVLLAATGSVATIKVPEIAVRLTKDISAKVKVVLTTSAQHFWDRAKKYNPAAWTEFEALQDEIMVLEDKDEWEEWDAMGDGVLHIQVRDWADLMLIAPLSANTLGKLANGLCDNLLTSVVRAWDVRRPVVVAPAMNTHMWTHPFTARQLGMLQADLGYHVVPPVSKLLACGDAGQGGLATVEDLVAAV 218
            D     RP VLLAA+GSVA +K+P +AV+L     A V++++T +A  F D A  Y+P A   F+AL   + +L D DEW  W ++GD VLHIQ+RDWAD++ IAPLSANT+ KLA+GLCDNLLT V RAW   +PV+VAPAMNT M+ H  T+ QL +L++  GY VVPPVSK LACG+ G G LA V+ +VAAV
Sbjct:  128 DATKSSRPRVLLAASGSVAAVKIPALAVQLA--AVADVRILVTKAATFFLDMAAAYDPVAHAAFDAL--ALPILHDDDEWSAWSSLGDPVLHIQLRDWADVLCIAPLSANTMAKLAHGLCDNLLTCVARAWSPTKPVIVAPAMNTQMYQHRVTSSQLALLRS-FGYTVVPPVSKTLACGEVGNGALAAVDTIVAAV 318          
BLAST of NO06G02960 vs. NCBI_GenBank
Match: XP_009828556.1 (hypothetical protein H257_05389 [Aphanomyces astaci] >ETV81819.1 hypothetical protein H257_05389 [Aphanomyces astaci])

HSP 1 Score: 210.3 bits (534), Expect = 6.200e-51
Identity = 108/195 (55.38%), Postives = 138/195 (70.77%), Query Frame = 0
Query:   27 RRPHVLLAATGSVATIKVPEIAVRLTKDISAKVKVVLTTSAQHFWDRAKKYNPAAWTEFEALQDEIMVLEDKDEWEEWDAMGDGVLHIQVRDWADLMLIAPLSANTLGKLANGLCDNLLTSVVRAWDVRRPVVVAPAMNTHMWTHPFTARQLGMLQADLGYHVVPPVSKLLACGDAGQGGLATVEDLVAAVKKYL 222
            RRP VLLAA+GSVAT+KVP +AV+L     A V+VV+T +AQ F D+A  Y+P A   F AL   + +L D DEW  W ++GD VLHI +RDWAD+M IAPLSANT+ KLA GLCDNL+T V RAW   +P++VAPAMNT M+ HP T   L +L++  GY +V PVSK LACG+ G G LA+V+ +V  V + L
Sbjct:  134 RRPRVLLAASGSVATVKVPALAVQLA--AVADVRVVVTKAAQFFLDKAATYDPEAHAAFIAL--SLPILRDDDEWNAWSSLGDPVLHIHLRDWADVMCIAPLSANTMAKLAGGLCDNLVTCVARAWSTAKPLIVAPAMNTQMYAHPATESHLHLLRS-FGYSIVSPVSKTLACGEVGNGALASVDTIVGTVVRSL 323          
BLAST of NO06G02960 vs. NCBI_GenBank
Match: OQR90760.1 (phosphopantothenoylcysteine decarboxylase [Achlya hypogyna])

HSP 1 Score: 206.8 bits (525), Expect = 6.800e-50
Identity = 103/206 (50.00%), Postives = 144/206 (69.90%), Query Frame = 0
Query:   26 QRRPHVLLAATGSVATIKVPEIAVRLTKDISAKVKVVLTTSAQHFWDRAKKYNPAAWTEFEALQDEIMVLEDKDEWEEWDAMGDGVLHIQVRDWADLMLIAPLSANTLGKLANGLCDNLLTSVVRAWDVRRPVVVAPAMNTHMWTHPFTARQLGMLQADLGYHVVPPVSKLLACGD--------------AGQGGLATVEDLVAAV 218
            ++RP VL+AA+GSVAT+K+PEI V+L +   A+V++VLT +A  F ++A  YNP+ +  +EAL   I +  D+DEW  W+A+GD +LHIQ+RDWAD+ ++APLSAN++ KLANGL DNLLT V RAW   +P++VAPAMNT MW HP T + L +L+ +  Y ++ PVSK+LACG+               G G LA V+D+VA V
Sbjct:    8 KQRPRVLVAASGSVATVKIPEIVVKLAE--HAEVQLVLTKAAAFFLEKAASYNPSMFAAYEAL--NITIHRDEDEWSSWNAIGDPILHIQLRDWADVFVVAPLSANSMAKLANGLSDNLLTCVARAWSSAKPLLVAPAMNTQMWLHPCTDKHLRVLEGEYVYRIIRPVSKMLACGETGARTSCWLRITTFVGYGALAHVDDIVACV 209          
BLAST of NO06G02960 vs. NCBI_GenBank
Match: POM63595.1 (Phosphopantothenoylcysteine decarboxylase [Phytophthora palmivora var. palmivora])

HSP 1 Score: 205.3 bits (521), Expect = 2.000e-49
Identity = 108/195 (55.38%), Postives = 131/195 (67.18%), Query Frame = 0
Query:   27 RRPHVLLAATGSVATIKVPEIAVRLTKDISAKVKVVLTTSAQHFWDRAKKYNPAAWTEFEA---LQD---EIMVLEDKDEWEEWDAMGDGVLHIQVRDWADLMLIAPLSANTLGKLANGLCDNLLTSVVRAWDVRRPVVVAPAMNTHMWTHPFTARQLGMLQADLGYHVVPPVSKLLACGDAGQGGLATVEDLVA 216
            R P VLL A+GSVAT+KVPEIAVRL                  F  RAK YN   W +F+A   L+D    I V+ D+DEWE W+ +GD V HI+++DWAD+ML+AP+SANTLGKLANGL DNLLT + RAW + +P V APAMNT MW HP TA  L +L  + GY +VPPV K LACG  G GGLATV+ +VA
Sbjct:    9 RSPRVLLCASGSVATVKVPEIAVRL--XXXXXXXXXXXXXXXFFLQRAKDYNAQVWEQFDAATKLEDGEGRIAVVRDEDEWEAWNVVGDSVRHIELKDWADVMLLAPMSANTLGKLANGLADNLLTCIARAWIMTKPFVFAPAMNTDMWNHPITATHLRVLD-EFGYKMVPPVEKKLACGVVGNGGLATVDSIVA 200          
BLAST of NO06G02960 vs. NCBI_GenBank
Match: POM76869.1 (Phosphopantothenoylcysteine decarboxylase [Phytophthora palmivora var. palmivora])

HSP 1 Score: 204.9 bits (520), Expect = 2.600e-49
Identity = 107/195 (54.87%), Postives = 131/195 (67.18%), Query Frame = 0
Query:   27 RRPHVLLAATGSVATIKVPEIAVRLTKDISAKVKVVLTTSAQHFWDRAKKYNPAAWTEFEA---LQD---EIMVLEDKDEWEEWDAMGDGVLHIQVRDWADLMLIAPLSANTLGKLANGLCDNLLTSVVRAWDVRRPVVVAPAMNTHMWTHPFTARQLGMLQADLGYHVVPPVSKLLACGDAGQGGLATVEDLVA 216
            R P VLL A+GSVAT+KVPEIAVRL                  F  RAK YN   W +F+A   L+D    I V+ D+DEWE W+ +GD V HI+++DWAD+ML+AP+SANTLGKLANGL DNLLT + RAW + +P + APAMNT MW HP TA  L +L  + GY +VPPV K LACG  G GGLATV+ +VA
Sbjct:    9 RSPRVLLCASGSVATVKVPEIAVRL--XXXXXXXXXXXXXXXFFLQRAKDYNAQVWEQFDAATKLEDGEGRIAVVRDEDEWEAWNVVGDSVRHIELKDWADVMLLAPMSANTLGKLANGLADNLLTCIARAWIMTKPFIFAPAMNTDMWNHPITATHLRVLD-EFGYKMVPPVEKKLACGVVGNGGLATVDSIVA 200          
BLAST of NO06G02960 vs. NCBI_GenBank
Match: GBG26598.1 (Coenzyme A biosynthesis bifunctional protein coaBC, putative [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 196.8 bits (499), Expect = 7.100e-47
Identity = 106/197 (53.81%), Postives = 132/197 (67.01%), Query Frame = 0
Query:   27 RRPHVLLAATGSVATIKVPEIAVRLTKDISAKVKVVLTTSAQHFWDRAKKYNPAAWTEFEAL--QDEIMVLEDKDEWEEWDAMGDGVLHIQVRDWADLMLIAPLSANTLGKLANGLCDNLLTSVVRAWDVRRPVVVAPAMNTHMWTHPFTARQLGMLQADLGYHVVPPVSKLLACGDAGQGGLATVEDLVAAVKKYL 222
            RRP VL+ A GSVA +KVPEI  RL K+  A V+VV T +A  F + A  YN       + L    +I  L D DEW       D V+HI++R WAD+ LIAPLSAN+L K+++GLCDNLLTSV RAWD  +P++VAPAMNT MW HP T+ QLG L++  G  VV PVSK LACGD G G LA V+ ++AAVK+ L
Sbjct:    7 RRPRVLVGACGSVAVVKVPEIVSRLVKEHDADVRVVWTGNACRFDEAAANYNAETKASLKDLISSGKIQSLVDDDEWNYKHVGKDPVVHIELRKWADVFLIAPLSANSLAKISHGLCDNLLTSVARAWDYSKPMLVAPAMNTFMWDHPLTSEQLGKLRS-FGAGVVSPVSKTLACGDTGSGALAPVDQILAAVKESL 202          
BLAST of NO06G02960 vs. NCBI_GenBank
Match: KFH70938.1 (phosphopantothenoylcysteine decarboxylase [Mortierella verticillata NRRL 6337])

HSP 1 Score: 196.1 bits (497), Expect = 1.200e-46
Identity = 99/206 (48.06%), Postives = 137/206 (66.50%), Query Frame = 0
Query:   21 PDIPGQRRPHVLLAATGSVATIKVPEIAVRLTKDIS--AKVKVVLTTSAQHFWDRAKKYNPAAWTEFEALQDEIM-VLEDKDEWEEWDAMGDGVLHIQVRDWADLMLIAPLSANTLGKLANGLCDNLLTSVVRAWDVRRPVVVAPAMNTHMWTHPFTARQLGMLQADLGYHVVPPVSKLLACGDAGQGGLATVEDLVAAVKKYLGR 224
            P + G++R  VL+ ATGSVA++K+P I   L ++I    ++KVV T +A HF+DR               +D +  +L DK EW+ W  M D V+HI +R+WAD+ +I PL ANTL KLA+GLCDNL+T ++RAWD  RPV+V PAMNT+MW H FTA+ L +L  +L Y V+PP+SKLLACGD G G +A    +V A+K+ + R
Sbjct:    9 PVLHGKKR--VLIGATGSVASVKIPIIVKTLVEEIGDLVEIKVVTTNAALHFFDR---------------KDVVAEILTDKSEWDAWGKMSDPVMHIDLRNWADMFIICPLDANTLAKLASGLCDNLITCILRAWDESRPVIVCPAMNTNMWNHKFTAKHLAVLTEELHYQVIPPISKLLACGDLGIGAMAEYRTIVDAIKEEVER 197          
BLAST of NO06G02960 vs. NCBI_GenBank
Match: XP_008875078.1 (hypothetical protein, variant [Aphanomyces invadans] >ETV96286.1 hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 195.7 bits (496), Expect = 1.600e-46
Identity = 100/182 (54.95%), Postives = 129/182 (70.88%), Query Frame = 0
Query:   22 DIPGQRRPHVLLAATGSVATIKVPEIAVRLTKDISAKVKVVLTTSAQHFWDRAKKYNPAAWTEFEALQDEIMVLEDKDEWEEWDAMGDGVLHIQVRDWADLMLIAPLSANTLGKLANGLCDNLLTSVVRAWDVRRPVVVAPAMNTHMWTHPFTARQLGMLQADLGYHVVPPVSKLLACGDAG 204
            D     RP VLLAA+GSVA +K+P +AV+L     A V++++T +A  F D A  Y+P A   F+AL   + +L D DEW  W ++GD VLHIQ+RDWAD++ IAPLSANT+ KLA+GLCDNLLT V RAW   +PV+VAPAMNT M+ H  T+ QL +L++  GY VVPPVSK LACG+ G
Sbjct:  128 DATKSSRPRVLLAASGSVAAVKIPALAVQLA--AVADVRILVTKAATFFLDMAAAYDPVAHAAFDAL--ALPILHDDDEWSAWSSLGDPVLHIQLRDWADVLCIAPLSANTMAKLAHGLCDNLLTCVARAWSPTKPVIVAPAMNTQMYQHRVTSSQLALLRS-FGYTVVPPVSKTLACGEVG 304          
BLAST of NO06G02960 vs. NCBI_GenBank
Match: XP_023278250.1 (phosphopantothenoylcysteine decarboxylase isoform X1 [Seriola lalandi dorsalis] >XP_023278251.1 phosphopantothenoylcysteine decarboxylase isoform X2 [Seriola lalandi dorsalis])

HSP 1 Score: 193.7 bits (491), Expect = 6.000e-46
Identity = 96/192 (50.00%), Postives = 128/192 (66.67%), Query Frame = 0
Query:   30 HVLLAATGSVATIKVPEIAVRLTKDISAKVKVVLTTSAQHFWDRAKKYNPAAWTEFEALQDEIMVLEDKDEWEEWDAMGDGVLHIQVRDWADLMLIAPLSANTLGKLANGLCDNLLTSVVRAWDVRRPVVVAPAMNTHMWTHPFTARQLGMLQADLGYHVVPPVSKLLACGDAGQGGLATVEDLVAAVKKYL 222
            H+L+  TGSVA +K+P +  +L +     V+V+ T  A+HF      YNPA        +  + +  DKDEWE W    D VLHI++R WADL++IAPL ANTLGK+ANG+CDNLLT VVRAWD  RP++  PAMNT MW HP TARQ+  L+ + GY  +P ++K L CGD G+G +A V  +V+AVK+YL
Sbjct:   22 HILVGVTGSVAALKLPLLVSQLLQLSGVDVRVITTEHAKHF------YNPA--------EVSVKIYSDKDEWEMWTQRSDPVLHIELRRWADLLVIAPLDANTLGKVANGICDNLLTCVVRAWDTSRPLLFCPAMNTAMWQHPITARQVSSLK-EFGYVEIPCIAKKLVCGDEGKGAMAEVSTIVSAVKQYL 198          
BLAST of NO06G02960 vs. NCBI_GenBank
Match: XP_006682439.1 (hypothetical protein BATDEDRAFT_33781 [Batrachochytrium dendrobatidis JAM81] >EGF77003.1 hypothetical protein BATDEDRAFT_33781 [Batrachochytrium dendrobatidis JAM81])

HSP 1 Score: 193.4 bits (490), Expect = 7.800e-46
Identity = 96/194 (49.48%), Postives = 129/194 (66.49%), Query Frame = 0
Query:   30 HVLLAATGSVATIKVPEIAVRLTKDI--SAKVKVVLTTSAQHFWDRAKKYNPAAWTEFEALQDEIMVLEDKDEWEEWDAMGDGVLHIQVRDWADLMLIAPLSANTLGKLANGLCDNLLTSVVRAWDVRRPVVVAPAMNTHMWTHPFTARQLGMLQADLGYHVVPPVSKLLACGDAGQGGLATVEDLVAAVKKYL 222
            H+L+  TGSVATIK+P +  +L +    + ++K++ T ++QHF +  +                I VL DKDEW+ W  + D VLHI +R+WADL +IAPL ANT+ K  +GLCDNLLT V+RAWD  +PVVV PAMNTHMW+HP T++QL +L  +LGY +V P+SK LACGD G G +A V D+VA   K L
Sbjct:    2 HILVGVTGSVATIKLPLLIKQLKESFPTNLEIKIIATHASQHFINTHE-------------IGSISVLTDKDEWDAWKKIPDPVLHIDLRNWADLFIIAPLDANTMAKAVHGLCDNLLTCVLRAWDSSKPVVVCPAMNTHMWSHPITSKQLTVLSQELGYVIVHPISKQLACGDVGIGAMADVSDIVAVALKTL 182          
The following BLAST results are available for this feature:
BLAST of NO06G02960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_008875077.14.700e-5155.10hypothetical protein H310_10456 [Aphanomyces invad... [more]
XP_009828556.16.200e-5155.38hypothetical protein H257_05389 [Aphanomyces astac... [more]
OQR90760.16.800e-5050.00phosphopantothenoylcysteine decarboxylase [Achlya ... [more]
POM63595.12.000e-4955.38Phosphopantothenoylcysteine decarboxylase [Phytoph... [more]
POM76869.12.600e-4954.87Phosphopantothenoylcysteine decarboxylase [Phytoph... [more]
GBG26598.17.100e-4753.81Coenzyme A biosynthesis bifunctional protein coaBC... [more]
KFH70938.11.200e-4648.06phosphopantothenoylcysteine decarboxylase [Mortier... [more]
XP_008875078.11.600e-4654.95hypothetical protein, variant [Aphanomyces invadan... [more]
XP_023278250.16.000e-4650.00phosphopantothenoylcysteine decarboxylase isoform ... [more]
XP_006682439.17.800e-4649.48hypothetical protein BATDEDRAFT_33781 [Batrachochy... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000158NSK000158Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02960.1NO06G02960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597530gene_6628Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100093g19gene4214Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02960.1NO06G02960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02960 ID=NO06G02960|Name=NO06G02960|organism=Nannochloropsis oceanica|type=gene|length=675bp
ATGGAATCGATAGCGCCCCAAAGTCCTGGTCAACGTCGTCGGCCTCGAAA
TTTCTTCCCACCGGACATTCCCGGGCAGCGTCGGCCGCACGTCCTCTTGG
CCGCCACGGGAAGCGTCGCGACGATCAAGGTGCCTGAAATCGCGGTGCGC
CTAACTAAGGACATCTCAGCAAAAGTTAAGGTGGTCCTAACGACGTCAGC
GCAGCATTTTTGGGATCGTGCAAAGAAGTACAACCCGGCAGCATGGACAG
AATTTGAGGCGTTGCAGGATGAAATCATGGTGTTGGAGGACAAGGACGAG
TGGGAGGAGTGGGACGCCATGGGCGACGGAGTCTTGCACATTCAAGTTCG
GGACTGGGCGGACTTGATGCTTATTGCCCCTTTATCGGCCAACACGTTGG
GTAAGCTCGCAAACGGGCTCTGCGACAATCTGTTGACTAGCGTGGTGCGT
GCTTGGGACGTAAGGAGACCAGTGGTGGTGGCCCCTGCCATGAATACGCA
CATGTGGACGCACCCCTTTACGGCGCGGCAACTAGGCATGCTGCAAGCTG
ACCTTGGATATCATGTCGTTCCACCTGTGTCAAAGCTACTGGCGTGTGGA
GACGCGGGTCAAGGTGGCTTGGCCACAGTGGAAGATCTGGTGGCGGCGGT
AAAGAAATATTTGGGTAGATATTAG
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protein sequence of NO06G02960.1

>NO06G02960.1-protein ID=NO06G02960.1-protein|Name=NO06G02960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MESIAPQSPGQRRRPRNFFPPDIPGQRRPHVLLAATGSVATIKVPEIAVR
LTKDISAKVKVVLTTSAQHFWDRAKKYNPAAWTEFEALQDEIMVLEDKDE
WEEWDAMGDGVLHIQVRDWADLMLIAPLSANTLGKLANGLCDNLLTSVVR
AWDVRRPVVVAPAMNTHMWTHPFTARQLGMLQADLGYHVVPPVSKLLACG
DAGQGGLATVEDLVAAVKKYLGRY*
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Synonyms
Publications