NO06G02960.1, NO06G02960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02960.1
Unique NameNO06G02960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length675
Alignment locationchr6:848687..849361 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:848687..849361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02960.1 vs.
Match: XP_005853750.1 (phosphopantothenoylcysteine decarboxylase [Nannochloropsis gaditana CCMP526]; EKU22610.1 phosphopantothenoylcysteine decarboxylase [Nannochloropsis gaditana CCMP526]; EWM26313.1 phosphopantothenoylcysteine decarboxylase [Nannochloropsis gaditana])

HSP 1 Score: 293.5 bits (750), Expect = 5.600e-76
Identity = 140/200 (70.00%), Postives = 168/200 (84.00%), Query Frame = 0 
Query:   26 QRRPHVLLAATGSVATIKVPEIAVRLTKDISAKVKVVLTTSAQHFWDRAKKYNPAAWTEFEALQDEIMVLEDKDEWEEWDAMGDGVLHIQVRDWADLMLIAPLSANTLGKLANGLCDNLLTSVVRAWDVR-RPVVVAPAMNTHMWTHPFTARQLGMLQADLGYHVVPPVSKLLACGDAGQGGLATVEDLVAAVKKYLGRY 225
            QRRP VLLAATGSVAT+K+PE+A+RL+    A+VKV LT +A+HFW+ AK YNPAAW  F+ L   + VLEDK+EW+ W AMGD VLHIQ+RDWADL+LIAPLSANTLGKLA+GLCDNL+TS+VRAWD++ +PV++APAMNTHMW HPFTA+QL MLQ DL Y V+PPVSKLLACGD GQGGLA ++DLV AV+  L  Y
Sbjct:    9 QRRPRVLLAATGSVATVKIPELALRLSLGAGAEVKVALTKAARHFWECAKVYNPAAWASFQELGGRVEVLEDKNEWDAWTAMGDPVLHIQLRDWADLLLIAPLSANTLGKLAHGLCDNLVTSIVRAWDLKQKPVLLAPAMNTHMWEHPFTAQQLRMLQTDLHYAVIPPVSKLLACGDRGQGGLAAIDDLVRAVQDQLQAY 208
The following BLAST results are available for this feature:
BLAST of NO06G02960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853750.15.600e-7670.00phosphopantothenoylcysteine decarboxylase [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02960NO06G02960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02960.1NO06G02960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02960.1.cds1NO06G02960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02960.1 ID=NO06G02960.1|Name=NO06G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=675bp
ATGGAATCGATAGCGCCCCAAAGTCCTGGTCAACGTCGTCGGCCTCGAAA
TTTCTTCCCACCGGACATTCCCGGGCAGCGTCGGCCGCACGTCCTCTTGG
CCGCCACGGGAAGCGTCGCGACGATCAAGGTGCCTGAAATCGCGGTGCGC
CTAACTAAGGACATCTCAGCAAAAGTTAAGGTGGTCCTAACGACGTCAGC
GCAGCATTTTTGGGATCGTGCAAAGAAGTACAACCCGGCAGCATGGACAG
AATTTGAGGCGTTGCAGGATGAAATCATGGTGTTGGAGGACAAGGACGAG
TGGGAGGAGTGGGACGCCATGGGCGACGGAGTCTTGCACATTCAAGTTCG
GGACTGGGCGGACTTGATGCTTATTGCCCCTTTATCGGCCAACACGTTGG
GTAAGCTCGCAAACGGGCTCTGCGACAATCTGTTGACTAGCGTGGTGCGT
GCTTGGGACGTAAGGAGACCAGTGGTGGTGGCCCCTGCCATGAATACGCA
CATGTGGACGCACCCCTTTACGGCGCGGCAACTAGGCATGCTGCAAGCTG
ACCTTGGATATCATGTCGTTCCACCTGTGTCAAAGCTACTGGCGTGTGGA
GACGCGGGTCAAGGTGGCTTGGCCACAGTGGAAGATCTGGTGGCGGCGGT
AAAGAAATATTTGGGTAGATATTAG
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protein sequence of NO06G02960.1

>NO06G02960.1-protein ID=NO06G02960.1-protein|Name=NO06G02960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MESIAPQSPGQRRRPRNFFPPDIPGQRRPHVLLAATGSVATIKVPEIAVR
LTKDISAKVKVVLTTSAQHFWDRAKKYNPAAWTEFEALQDEIMVLEDKDE
WEEWDAMGDGVLHIQVRDWADLMLIAPLSANTLGKLANGLCDNLLTSVVR
AWDVRRPVVVAPAMNTHMWTHPFTARQLGMLQADLGYHVVPPVSKLLACG
DAGQGGLATVEDLVAAVKKYLGRY*
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mRNA from alignment at chr6:848687..849361-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02960.1 ID=NO06G02960.1|Name=NO06G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=675bp|location=Sequence derived from alignment at chr6:848687..849361- (Nannochloropsis oceanica)
ATGGAATCGATAGCGCCCCAAAGTCCTGGTCAACGTCGTCGGCCTCGAAA
TTTCTTCCCACCGGACATTCCCGGGCAGCGTCGGCCGCACGTCCTCTTGG
CCGCCACGGGAAGCGTCGCGACGATCAAGGTGCCTGAAATCGCGGTGCGC
CTAACTAAGGACATCTCAGCAAAAGTTAAGGTGGTCCTAACGACGTCAGC
GCAGCATTTTTGGGATCGTGCAAAGAAGTACAACCCGGCAGCATGGACAG
AATTTGAGGCGTTGCAGGATGAAATCATGGTGTTGGAGGACAAGGACGAG
TGGGAGGAGTGGGACGCCATGGGCGACGGAGTCTTGCACATTCAAGTTCG
GGACTGGGCGGACTTGATGCTTATTGCCCCTTTATCGGCCAACACGTTGG
GTAAGCTCGCAAACGGGCTCTGCGACAATCTGTTGACTAGCGTGGTGCGT
GCTTGGGACGTAAGGAGACCAGTGGTGGTGGCCCCTGCCATGAATACGCA
CATGTGGACGCACCCCTTTACGGCGCGGCAACTAGGCATGCTGCAAGCTG
ACCTTGGATATCATGTCGTTCCACCTGTGTCAAAGCTACTGGCGTGTGGA
GACGCGGGTCAAGGTGGCTTGGCCACAGTGGAAGATCTGGTGGCGGCGGT
AAAGAAATATTTGGGTAGATATTAG
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Coding sequence (CDS) from alignment at chr6:848687..849361-

>NO06G02960.1 ID=NO06G02960.1|Name=NO06G02960.1|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at chr6:848687..849361- (Nannochloropsis oceanica)
ATGGAATCGATAGCGCCCCAAAGTCCTGGTCAACGTCGTCGGCCTCGAAA
TTTCTTCCCACCGGACATTCCCGGGCAGCGTCGGCCGCACGTCCTCTTGG
CCGCCACGGGAAGCGTCGCGACGATCAAGGTGCCTGAAATCGCGGTGCGC
CTAACTAAGGACATCTCAGCAAAAGTTAAGGTGGTCCTAACGACGTCAGC
GCAGCATTTTTGGGATCGTGCAAAGAAGTACAACCCGGCAGCATGGACAG
AATTTGAGGCGTTGCAGGATGAAATCATGGTGTTGGAGGACAAGGACGAG
TGGGAGGAGTGGGACGCCATGGGCGACGGAGTCTTGCACATTCAAGTTCG
GGACTGGGCGGACTTGATGCTTATTGCCCCTTTATCGGCCAACACGTTGG
GTAAGCTCGCAAACGGGCTCTGCGACAATCTGTTGACTAGCGTGGTGCGT
GCTTGGGACGTAAGGAGACCAGTGGTGGTGGCCCCTGCCATGAATACGCA
CATGTGGACGCACCCCTTTACGGCGCGGCAACTAGGCATGCTGCAAGCTG
ACCTTGGATATCATGTCGTTCCACCTGTGTCAAAGCTACTGGCGTGTGGA
GACGCGGGTCAAGGTGGCTTGGCCACAGTGGAAGATCTGGTGGCGGCGGT
AAAGAAATATTTGGGTAGATATTAG
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Synonyms
Publications