NO06G02940, NO06G02940 (gene) Nannochloropsis oceanica

Overview
NameNO06G02940
Unique NameNO06G02940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5450
Alignment locationchr6:841862..847311 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:841862..847311 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO06G02940 vs. NCBI_GenBank
Match: EWM26308.1 (hypothetical protein Naga_100093g17 [Nannochloropsis gaditana])

HSP 1 Score: 237.3 bits (604), Expect = 7.500e-59
Identity = 140/322 (43.48%), Postives = 186/322 (57.76%), Query Frame = 0 
Query:   39 ERLEAKRAFDRVKQHPLVNEEEEGPTVEYKAADGSIKSMTQAELQKRLQQQEAVLPHLDQDGSALSKSEEGKATIEELKTKDPYLSRMIQASEFALHRLQEAGEVGDNARLKGFHSVDDDNEKVRMLFPWTFMHDLTPLLKQSHTFSLGFNLTWLSSYNYLNLASALLCSFNTTRSFPSLSYTTHKQDTTVVGADLIRLHLHLHVANDDTEDERKFEVLLEGREGFGAMTKAWRVVGTQKEAIDLPAPSPFRVSSPSSVWNWLSMVLGVVGGAQTGGEDAEWLKGVLLMVGGGLLCLGMGLVLMTTAAAGDLGG----RKGD 357
            E L+AKRAFDRVKQHP+   + +GP +EYKAADG++K+MTQA+LQ+RLQQQ+AVLP L++DGS L+KSEEGKAT+EELKTKDPYLSRM++AS+FALHRLQ  G +    RLK  H+V+++                                                                  + T+ + AD I+LHL L V  D+T  + + EVLLEG +G GA+T AWR+VG  K AI L  P     S P+S W WLS++ GV+ G +      EW  G++ M+GGG +C+ +GL L+ T+A G   G    RKGD
Sbjct:   37 EHLDAKRAFDRVKQHPVT--DGDGPLIEYKAADGTMKTMTQADLQQRLQQQDAVLPQLNEDGSTLTKSEEGKATLEELKTKDPYLSRMVEASQFALHRLQADGALDKEMRLKSLHTVEEEG----------------------------------------------------------------PEGTSTLDADHIKLHLRL-VVEDETMHQEEVEVLLEGGDGHGALTHAWRLVGEDKVAIALSFP---EASPPASSWGWLSVLTGVINGERVLLTGREWSPGMVWMLGGGFVCVAVGLTLVVTSAVGKKSGRGASRKGD 288
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BLAST of NO06G02940 vs. NCBI_GenBank
Match: XP_005853749.1 (hypothetical protein NGA_0132502 [Nannochloropsis gaditana CCMP526] >EKU22609.1 hypothetical protein NGA_0132502 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 231.5 bits (589), Expect = 4.100e-57
Identity = 140/326 (42.94%), Postives = 186/326 (57.06%), Query Frame = 0 
Query:   39 ERLEAKRAFDRVKQHPLVNEEEEGPTVEYKAADGSIKSMTQAELQKRLQQQEAVLPHLDQDGSALSKSEEGKATIEE----LKTKDPYLSRMIQASEFALHRLQEAGEVGDNARLKGFHSVDDDNEKVRMLFPWTFMHDLTPLLKQSHTFSLGFNLTWLSSYNYLNLASALLCSFNTTRSFPSLSYTTHKQDTTVVGADLIRLHLHLHVANDDTEDERKFEVLLEGREGFGAMTKAWRVVGTQKEAIDLPAPSPFRVSSPSSVWNWLSMVLGVVGGAQTGGEDAEWLKGVLLMVGGGLLCLGMGLVLMTTAAAGDLGG----RKGD 357
            E L+AKRAFDRVKQHP+   + +GP +EYKAADG++K+MTQA+LQ+RLQQQ+AVLP L++DGS L+KSEEGKAT+EE    LKTKDPYLSRM++AS+FALHRLQ  G +    RLK  H+V+++                                                                  + T+ + AD I+LHL L V  D+T  + + EVLLEG +G GA+T AWR+VG  K AI L  P     S P+S W WLS++ GV+ G +      EW  G++ M+GGG +C+ +GL L+ T+A G   G    RKGD
Sbjct:   37 EHLDAKRAFDRVKQHPVT--DGDGPLIEYKAADGTMKTMTQADLQQRLQQQDAVLPQLNEDGSTLTKSEEGKATLEEVRGTLKTKDPYLSRMVEASQFALHRLQADGALDKEMRLKSLHTVEEEG----------------------------------------------------------------PEGTSTLDADHIKLHLRL-VVEDETMHQEEVEVLLEGGDGHGALTHAWRLVGEDKVAIALSFP---EASPPASSWGWLSVLTGVINGERVLLTGREWSPGMVWMLGGGFVCVAVGLTLVVTSAVGKKSGRGASRKGD 292
The following BLAST results are available for this feature:
BLAST of NO06G02940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM26308.17.500e-5943.48hypothetical protein Naga_100093g17 [Nannochlorops... [more]
XP_005853749.14.100e-5742.94hypothetical protein NGA_0132502 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000160NSK000160Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02940.1NO06G02940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597526gene_6626Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100093g17gene4216Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02940.1NO06G02940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02940 ID=NO06G02940|Name=NO06G02940|organism=Nannochloropsis oceanica|type=gene|length=5450bp
CACCAGCAGCTGAAAATGTGGAATTCCCGCATCTCTCCTGGTCGTCCGCT
GCTCCTCCTGCTTCTGCTGCTCCTACATGTCAGCGCCACCACGACAGgta
agccccagaagcatgatatgttgcctccgcaggcggtccatctccagctc
aactttccacgttcatgatctaaacacgcgccccagCCGCTTCTCTTGAC
TCGGCCGCTGCCCGCAAGGAACGTCTGGAGGCCAAGCGGGCCTTTGACCG
GGTGAAGCAGCATCCTTTGGTCAATGAGGAGGAGGAGGGACCCACGGTAG
AGTACAAGGCGGCGGACGGCAGCATCAAAAGCATGACCCAGgtgcgttga
gtgggaatgaagaaaccttgcaatttttcggtagggaaagatgagttctg
tagcgccaagacatccactttctgcgactcctttcttaccatgtcctaac
tggcccatcccccagGCCGAGCTCCAGAAGCGCCTGCAGCAGCAAGAAGC
CGTGCTACCCCACCTAGATCAGGACGGCAGTGCCCTTAGCAAATCTGAGG
AAGGAAAGGCGACGATAGAAGAGgtgcgtggtggctgggctggtgagcga
aggaaaaaggagagatgaaggctcttttcacttaccctgcactcttccat
gcatccttggaatggcttacacaacgaacggacacacgcacacacacagC
TCAAGACCAAGGACCCCTATCTTTCCCGGATGATCCAAGCGTCGGAGTTT
GCGCTGCACAGgttggtaatggattcaggttgggagggggatggtggcgt
aggttgggaggggggtggtggcgagagagtgattatattgtttttgttgt
tggctggcctcccatcccttcgcaccttctttctgtgttttgatatcacg
atttgaagcacgcgtatataattacttcaatacatgaaagGCTGCAAGAA
GCCGGCGAGGTGGGCGACAATGCGCGACTCAAGGGGTTTCATTCAGTGGA
TGACGACAATGAGAAGGTGAGGATGCTCTTTCCTTGGACATTCATGCATG
ATTTGACTCCGCTCCTTAAGCAATCTCATACATTCTCTCTCGGTTTTAAC
CTTACTTGGCTCTCATCGTACAATTATCTTAATCTCGCTTCCGCTCTATT
ATGTTCTTTCAACACTACCCGTTCATTCCCCTCTCTTTCTTACACGACTC
ATAAACAGGACACCACCGTTGTAGGCGCAGACTTGATCCGCCTCCATCTG
CATTTACATGTCGCCAATGATGACACCGAGGATGAAAGGAAATTTGAGgt
aaattgatgacgatggggagggagagacgggacaaatcgccttccccctt
ccatcactttctttgtccggtcgcgcccctttgccttaaatgcgtcaaat
ataaccactaacagGTGTTGCTCGAAGGACGGGAAGGATTCGGGGCTATG
ACAAAGGCGTGGCGCGTAGTGGGCACGCAAAAGGAAGCCATTGATCTTCC
TGCCCCATCGCCATTCCGTGTTTCCTCTCCCTCCTCGGTCTGGAACTGGT
TGTCCATGGTGCTTGGCGTGGTGGGGGGCGCGCAGACAGGAGGAGAGGAC
GCAGAATGGTTGAAAGGTGTGCTTCTGATGGTGGGTGGTGGTCTGCTGTG
CCTCGGTATGGGGCTGGTATTGATGACAACGGCGGCAGCGGGGGACCTTG
GAGGGAGGAAAGGGGATTGAGGTGGGAGCGGGGAGGAAGTTGTATGTGTG
CAAAAAGTGGAGTAGGAAACATGATGAAAACAAAGACGAATACAAAGTGG
CTAGCTGGTTGATGGTCGGGTCGTTTTGATATGCTGTCCTGGTCTAAGAA
CGTGTCGGTGAGCTGACACGTTGCAAGCCTGCACGACGCAGACGATTTCA
TTCAGGGCTGAGCCTTTCTTGTCCATTCTCTTTCCCTAACAAAACCCTCT
TCAAGCGTTCTATCCTTTCCATTTTCTTTGAACACGTGTCTTTATGAGAC
GCTCCAAGTGTTCAACAGTTTGTAAAAAAGAGTCGTTGCACGCGTTCGCT
TCTGAACTCTCTCGCAATTGAACAGTATGTGCGGTTGCGAGTACAAAAAG
TATGAAACGAGAATGAGTGATGACAGAAAGTGAAAGCAAGAATTCTTTTG
ACCTCTCTTGTGACGTTGTTTGCTTTGCTTTCGTACTGTGAGTTTCTTTT
TTGGGGACAATAATTCTAATTTCTCTGTTACAAGTCTTATCTTTCACTTT
CCATACCTCTGTTCAATGAACCCGTGGAATGTTCTAGTGGATTAGTCGAT
TGCTTTTACGGTCTAAGCTCCCAAACAATTTTACTCAAAAGCACTCTCTC
TCTCTCTTTCCCGCACATATACTGTATTTTTTGTCGAAATGCTAGACAGC
GCCCTTCAGCCCCTAGGCATGGACCCCAATGTGAAATAAAGAATATAAAC
TGCATGAATGGCCCTGATATCTACTTAATACTATGACACAAAGTATTTTG
ATGCCCCACTAATTTCCTTTTCAACTCCCTCCGGTGCTTTCTCATCTATC
CTTTTCCTTCCGTCATCTTCCCACTTTTTTTTCTTTTATTCTATTTTAGT
CGATCTATTTAAACGATCTTCCCTCCTGCTGATCCAAAATCATGCCTAAA
TAAACACGCCACGCCATCCTTACATCCATCGCCTTTCCCGAAAAATCGAC
ACTTCCGCGTATAACGCTGACTTCCAGTCCCACCCCAATTCCTCCCTTCT
TTTACTTCCTTTCTTCCTTCTGCCATAGTCGCTGTTGTGGTATCAGGAGC
CGCAGCAGTAGCAACAGCCGCGGCAATTTTGTTGCTGCTGCTACTGCTAT
TTATGGTGGTAGCGAAGAGTGGTTTGAAAGAGGAGGCGGCGGAGGAGGGG
AGGGATAATGTGTTGGAGGAGGAGAAGGAGGCACCAGAGCAGGTGGTGGT
CTTGGTGTCATGGCTGGACTGCGAAGCCGGGGAAGCCAAAGAGGCCGCAG
GGAAAAGAGAAAGCGGCTGCTGTTGTTGCTGCTGCTGTTGCTGTTGCTGC
TGTTGCTGCTGCTGCTGCTTCTTCTTCCTCTGCTGCGGCTTGATGACGGG
CATAAGAGCCTGGCCAATCCGGAGCGGCTGCTTGTCCTTCCAGGGCTGCT
GCTGCTGCTCCTGCTGTCGCTGCTGCTGCTGGTAGGTCTCGATGGAAGGG
GAGATTTTACCCTTGCTTTGGTCGACGGACTCGGAAGAGCTCAACATCGC
ACCACCAACCAAACATGGCTTGCCGTTTCTCATCCCTTGTTTTCGCTGCT
GCTGCTGCTGCTCTTGCTGGTAATGAAGTGTCTCGCTCTTGGAGGAAATG
GTGGAACTAGTTGATCCTGTTTCAAGAATATCGTATTGATGACTGTGATT
ATGCTGCTGCTGATGATGATGATTATGCTGCTGCTGCTGTTGCTGCTGCT
GGTCGTCGTGGTGGCGGTGTGGGAAGGAGAGGTCCTTGAGCATACGCGTC
ATTGTCTTGGCTTCGCTCGCCGTGTCCCCTTCCTGCTTGGCAGTAGAGGT
GACATGGTGGTGGTAGTGCTGCAGCTTACGCTGCTGTTGTTGTTGGTCTT
CGTGTTGATGGTGTTGCTGCTGTTTTTCCGTCCCTCCCGCGCCAGTTACC
GAGGGGGAGGAGAAGAGGGAGGAAGAGCGAGAGGACAAGGAAGAGATATC
GGTATTGCTGGCAGTAATGACCACCGCTGGCGCCACAGCTATAGCAGCCT
CTACTGCTCCCACCTGCTCTTTGTCCCCGCCTTCTCCCCCCCCCCCTCCA
CCACATCCCCAACAGGCCTCCCAGCCTCTCTTCGTGCACACAATTTCACC
TCCTCCTCAGCCAAAGCCAACAACTCCCTCGCCGCTTTCAGCTTAATCTC
AGCTTCTTTTCTGATCAAGATCCGCATGGCCTCATCTTCCGCCATCATCG
CCAAGGTTTCTTTGAGCGCAATTTTTTCACAGAATTTTTCAAATTTCTTC
CGTTTTTTTTCTTCGACCCTCGCCTGTTTGAACAGGGCCTGGACAGGGGC
GGAAAGAGGGGGAAGGGGATTTGAGGATGGCGGGATGGCGCTGTTTGCGG
AGGTGGACGGTGCTGCTAAGGGGGGGATGGTAATAGTGGTGGGCGCTGCA
ACATTAGGGAAGAGGATGTTTGTGACTAACTCGGATGTGGAGGGAAGGGG
GGGAAAGGTGGTGGTGGTGGAGGAAGAAGAGACGACAGGGCAGGGAACTG
ATTGCTGGGAGCTGGAAGCAGGACGTGGCACAGCCAGCACCAAGGAGGAG
CAAGAGGATGAGGACTGTGGTCCAGCCGCTGATGCTGACGTTACTGCAGT
CGGTAATACGGACGCTCCTGTGCCTTCATTACTACTCCCACCTCCTTGCT
TTTGAAACTTATTCTTATTCTTATTTTTCTTCACCTCTGTCTCCTGATGC
ACCTTCCTGTCCAACGTAAGTTCCGCCGCTTTCCTCTCTGCAGCCTGCAT
CCATTTCTGCTCCCCATCCCTCCTTAAGGCCGCCTCCTCCGCCTCCCTCT
TCCTTTCCTCCCGTCTTTCCCTCGCCTCCTCCTTTTTCTGCCACAGCGTC
AAATGTCGTGCAGCAGCTGCGGCAGTTAAGTAAGCCGCCACCTGTTGCAA
TCGAGCCCGTCGACTCTCGAGCCCATACCTCGCCTCTCCTTCCCTCCCTT
CCGCCCCAGAACACACAATAATCTCCTCCTCCTCATCCTCCTCAATCGCA
TCCCCGTCCAAGCAACTCTGCACCATCTCCAAGGGCGTCTCTCCTCCTCC
TCCAAGCCCCCTCCCCTCCCCTCCTAACCTGCAACCTCCTCCTACCCGCA
CAAGCACACTCGCCCCATGACGTATCAGTAAATCCACCGTTTCCATCCCC
GCGCTAACGGCCGCATAGTGCAACGGACTCAGATTCAACCCACTTAACAA
ATTCAAATCCAACACAAATTTCCCTTTCCTCCCTCCCTCCCTTCCTGACA
TCTTCTTATGCCTCAGTAATAGCCTGAGGTAGGGAGCATCACAGGCTTCC
GCCACTGCATGCATCAGCATCCTCCCCTGATCATCCTGATCCTTGCTCAA
ATCAAACAAACTATATCCTGCACCCTTATCTACCTCCAATAAAAATGCTG
CAATATTTAACCGTCCTCTATGTGCCTCTGGGAGCTCCTGTAACAGCATC
TGCCACGCTGCTTCCTCCTGCTCCTCCCGCTGCTGCTGCTGCTGCTGCTG
ATCCTGCTGTTGATCCTCCTCCCCTTGGACACTATCGCTCAGTCGTCGTC
GTCGTCTGCTGCCGGCGCCAGTCCTTCCCCTTCTCCACGGTGTCACACAA
GCGTGCAGAAGCGTCATCCTTCTCCCATCCCTTGACCCCAAAAAGTCATG
GTAATAATTCAGATTTACCTCCCAACCTCCCTCCCTCCCTCCCTCCCTCC
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protein sequence of NO06G02940.1

>NO06G02940.1-protein ID=NO06G02940.1-protein|Name=NO06G02940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MWNSRISPGRPLLLLLLLLLHVSATTTAASLDSAAARKERLEAKRAFDRV
KQHPLVNEEEEGPTVEYKAADGSIKSMTQAELQKRLQQQEAVLPHLDQDG
SALSKSEEGKATIEELKTKDPYLSRMIQASEFALHRLQEAGEVGDNARLK
GFHSVDDDNEKVRMLFPWTFMHDLTPLLKQSHTFSLGFNLTWLSSYNYLN
LASALLCSFNTTRSFPSLSYTTHKQDTTVVGADLIRLHLHLHVANDDTED
ERKFEVLLEGREGFGAMTKAWRVVGTQKEAIDLPAPSPFRVSSPSSVWNW
LSMVLGVVGGAQTGGEDAEWLKGVLLMVGGGLLCLGMGLVLMTTAAAGDL
GGRKGD*
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Synonyms
Publications