NO06G02930, NO06G02930 (gene) Nannochloropsis oceanica

Overview
NameNO06G02930
Unique NameNO06G02930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4113
Alignment locationchr6:840591..844703 +

Link to JBrowse

Properties
Property NameValue
DescriptionZinc finger, CCCH-type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:840591..844703 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0046872metal ion binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
IPR000571Znf_CCCH
IPR019400Peptidase_C65_otubain
Homology
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BLAST of NO06G02930 vs. NCBI_GenBank
Match: EWM26307.1 (Zinc finger, CCCH-type [Nannochloropsis gaditana])

HSP 1 Score: 352.8 bits (904), Expect = 4.100e-93
Identity = 391/850 (46.00%), Postives = 459/850 (54.00%), Query Frame = 0 
Query:    1 MKVNEAFSLLGLSPSPPPDEGAMRRAFKRLALPFLALGEGDSLRHTNLWELCEAYEVLMHINHEVDVGNGGQGKGYDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILATTPHPTAAIVASPAVDATSSSSLAQSVSLPCTTSTGKNIVWISGRPYFLAPTIGFNGGTSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEAKLVTFADAIQAAVDGKFAHFLSLVESVKRSGGGG--------REXXXXXXXXVNLNYYHDFLGSRDGRRMTLLHACVTPWRRGRTGA-GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQELPEAHRGRLNIAAFLLEVDKGAGYSLFDLSKDQDDQGRMLMHAVAEACDAPYLRLLLRHKKMSGREGGRKGKFVLDLNLLSGLNLSPLHYAAVSAGMETVDLLIRHGASVLVRVGGGCRLGGEGRGLGGGGETPLEMVQSCLDGDAIEEDEEEEIIVC--------SGAE-GRE-GEARYGLESRRARLQQVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGE---QKWMQAAERKAAELTLDRKVHQETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPL------PSTSELVTNILFPNVAAPXXXXXXXXXXXXXSANSAIPPSSXXXXXXXXXVQALFKQARVEEKKRKKFEKFCEKIALKETLAMMAEDEAMRILIRKEAEIKLKAARELLALAEE 823
            M   EA +LL L  SP PDE ++R AFK LALP+LALGEGD+ RHT LW+LC AYEVLMHIN +++   G +    +XXXXXXX                                  A    P   + A+PA+ A S+S L Q  SLPC TSTGK +VW+ GRPYFLAP  G+ G               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXX  GEAKLVTF DAIQAA  G+FAHFL++VE+V+R   G         +          +L++YHDFL SRD RR TLLHACVTPWRR   GA G                                       L EL E+HRGRL+IAAFLL+ D   G++LFD+S D DDQGR ++HA+AEACD+ +L+LLLRHK        R  +F LDLN LS L+L+PLHYAAVSAG+ETV LL+ HGAS L+RVGGG    G G   GG GETPLEMVQSCL+G AI                    G E GRE GEA YGLESRR RLQQVA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +  Q          ++ +V +++                                                                               P        ST    +NILF   A+                     P+          V+ALFKQA +EEK+RKKFEKFC KI  KE  AM +E+ A+   +R EA  K+KAA +LL+ A++
Sbjct:    1 MNEKEALALLDLPESPHPDEFSVRAAFKALALPYLALGEGDAQRHTRLWQLCRAYEVLMHINEDIEGVEGDEDLNSEXXXXXXXAYWFDEDGEVDELLRLHWQHCRRRRRDGQQASGDAEAQQP---LPAAPALSAASTSLLPQPPSLPCMTSTGKCVVWVGGRPYFLAPDAGWGG-----RQGVASQAQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXENGEAKLVTFEDAIQAARQGRFAHFLAMVETVRRKAAGNGWHGARTWQYGSTGGGADNSLHFYHDFLRSRDARRETLLHACVTPWRRLEPGAGGRRRQRPIFPRPGLEGGGLQLSLEAPEGGVAMEETAWQALLHELSESHRGRLHIAAFLLDTDATTGFALFDMSHDLDDQGRAVVHAIAEACDSLFLQLLLRHK-------ARYPRFALDLNQLSALHLTPLHYAAVSAGIETVALLLSHGASPLMRVGGGV---GGGVEEGGKGETPLEMVQSCLEGGAIXXXXXXXXXXTRVAGGHWGEGVETGREGGEASYGLESRRVRLQQVAAHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIMNEHGQCGTETPKGPQIEGEVQRDSEAKMSHSSEEMGGKGEHGNSCPVESAATTTASAPSIPCTSVIGSTPNPTAVGAAGLTRPASTYCEPTTLEEPSTESQPPPSQAPVQESSTDAPASNILFLPTAS---CSLDPPALQDAKPTKRADPAKPTPPAIAEPVKALFKQAALEEKRRKKFEKFCAKIERKENQAMASEEAAVWASLRVEAAAKVKAAEKLLSEAQD 829
The following BLAST results are available for this feature:
BLAST of NO06G02930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26307.14.100e-9346.00Zinc finger, CCCH-type [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000161NSK000161Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02930.1NO06G02930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597518gene_6624Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100093g16gene4217Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02930.1NO06G02930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02930 ID=NO06G02930|Name=NO06G02930|organism=Nannochloropsis oceanica|type=gene|length=4113bp
ACAGGCCGCCCCGAACCCGCAGAAGCGAGAGAGGTGTTTGAAGTGATCGG
CGACACAGCAAGGCCAAGACCCCACCACCCTACTACAACAGCCATGAAGG
TCAACGAGGCATTCAGCCTGCTCGGGCTGTCGCCTTCGCCACCCCCAGAC
GAAGGGGCCATGCGTAGGGCCTTCAAGCGATTGGCTCTGCCCTTCTTGGC
GTTGGGCGAGGGGGACTCGCTTCGACACACCAATCTGTGGGAGCTCTGTG
AAGCATACGAGgtacgtgtaaagcacaaaaggccgtctgcatgccactat
ctttgtactaaaggctgtcttgtaatttagaaaaggcctgggtctgttta
ccggttttcctgatggcttctgtctttgcccttagcgcacctgaggttgt
gctatgaatgtctccacagatgcagggtctatacatcccttttcctacgc
ccagcgtgcaccacgtcagtcacgatccttcgccacttagtacacatttg
aagcttgctttacttaacgctcattctctgtcccgtctcctttcttcacc
ccgtccctcaccctaaaacagGTCTTGATGCATATTAACCACGAGGTGGA
CGTTGGAAACGGCGGCCAAGGCAAAGGCTACGACGACGAGGAGGAGAGAG
GCAGTCTAGAAGATGAAGAAGAGGCCTACTTCTTTGATGACGATGGGGAG
GTAGACGAACTCCTCCGCCTACATGCGCAGCACCGTCGCCGTCAACGGCA
TATTCTGGCAACCACTCCCCACCCGACAGCAGCAATAGTCGCGTCACCAG
CAGTGGATGCAACATCCTCCTCCTCCTTAGCACAGTCCGTGTCCCTACCT
TGCACAACCAGCACGGGCAAGAACATTGTTTGGATCAGTGGCCGGCCCTA
TTTCCTTGCTCCCACCATTGGATTCAACGGTGGCACATCGCCGCTTCCTC
CGCCGCCGCAACAACAACGACAGCAACAAATAGCTAAAGCAGCCATAGAC
GACGACGAAATACGGGCCCGACGAGCAATGGAGGCTAATGAAAGGAGAGA
GCGACGAGAGCAGCTCATGGCTGAAGAGAAAACAAGACGAGCGAGGGAGG
AAGAGAGGGAGACGCGAAGGAAGGCAAGGATGGAGCAGCGGAGGAAAGAG
AAGGAGGAAAATGGGGAGGCAAAGTTGGTGACATTTGCAGATGCCATCCA
GGCCGCAGTGGATGGGAAATTTGCTCACTTTTTGTCATTGGTTGAAAGTG
TAAAGAGGAGTGGAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGTTGG
GAGGTAAATCTGAATTATTACCATGACTTTTTGGGGTCAAGGGATGGGAG
AAGGATGACGCTTCTGCACGCTTGTGTGACACCGTGGAGAAGGGGAAGGA
CTGGCGCCGGCAGCAGACGACGACGACGACTGAGCGATAGTGTCCAAGGG
GAGGAGGATCAACAGCAGGATCAGCAGCAGCAGCAGCAGCAGCGGGAGGA
GCAGGAGGAAGCAGCGTGGCAGATGCTGTTACAGGAGCTCCCAGAGGCAC
ATAGAGGACGGTTAAATATTGCAGCATTTTTATTGGAGGTAGATAAGGGT
GCAGGATATAGTTTGTTTGATTTGAGCAAGGATCAGGATGATCAGGGGAG
GATGCTGATGCATGCAGTGGCGGAAGCCTGTGATGCTCCCTACCTCAGGC
TATTACTGAGGCATAAGAAGATGTCAGGAAGGGAGGGAGGGAGGAAAGGG
AAATTTGTGTTGGATTTGAATTTGTTAAGTGGGTTGAATCTGAGTCCGTT
GCACTATGCGGCCGTTAGCGCGGGGATGGAAACGGTGGATTTACTGATAC
GTCATGGGGCGAGTGTGCTTGTGCGGGTAGGAGGAGGTTGCAGGTTAGGA
GGGGAGGGGAGGGGGCTTGGAGGAGGAGGAGAGACGCCCTTGGAGATGGT
GCAGAGTTGCTTGGACGGGGATGCGATTGAGGAGGATGAGGAGGAGGAGA
TTATTGTGTGTTCTGGGGCGGAAGGGAGGGAAGGAGAGGCGAGGTATGGG
CTCGAGAGTCGACGGGCTCGATTGCAACAGGTGGCGGCTTACTTAACTGC
CGCAGCTGCTGCACGACATTTGACGCTGTGGCAGAAAAAGGAGGAGGCGA
GGGAAAGACGGGAGGAAAGGAAGAGGGAGGCGGAGGAGGCGGCCTTAAGG
AGGGATGGGGAGCAGAAATGGATGCAGGCTGCAGAGAGGAAAGCGGCGGA
ACTTACGTTGGACAGGAAGGTGCATCAGGAGACAGAGGTGAAGAAAAATA
AGAATAAGAATAAGTTTCAAAAGCAAGGAGGTGGGAGTAGTAATGAAGGC
ACAGGAGCGTCCGTATTACCGACTGCAGTAACGTCAGCATCAGCGGCTGG
ACCACAGTCCTCATCCTCTTGCTCCTCCTTGGTGCTGGCTGTGCCACGTC
CTGCTTCCAGCTCCCAGCAATCAGTTCCCTGCCCTGTCGTCTCTTCTTCC
TCCACCACCACCACCTTTCCCCCCCTTCCCTCCACATCCGAGTTAGTCAC
AAACATCCTCTTCCCTAATGTTGCAGCGCCCACCACTATTACCATCCCCC
CCTTAGCAGCACCGTCCACCTCCGCAAACAGCGCCATCCCGCCATCCTCA
AATCCCCTTCCCCCTCTTTCCGCCCCTGTCCAGGCCCTGTTCAAACAGGC
GAGGGTCGAAGAAAAAAAACGGAAGAAATTTGAAAAATTCTGTGAAAAAA
TTGCGCTCAAAGAAACCTTGGCGATGATGGCGGAAGATGAGGCCATGCGG
ATCTTGATCAGAAAAGAAGCTGAGATTAAGCTGAAAGCGGCGAGGGAGTT
GTTGGCTTTGGCTGAGGAGGAGgtgaaattgtgtgcacgaagagaggctg
ggaggcctgttggggatgtggtggagggggggggggagaaggcggggaca
aagagcagGTGGGAGCAGTAGAGGCTGCTATAGCTGTGGCGCCAGCGGTG
GTCATTACTGCCAGCAATACCGATATCTCTTCCTTGTCCTCTCGCTCTTC
CTCCCTCTTCTCCTCCCCCTCGGTAACTGGCGCGGGAGGGACGGAAAAAC
AGCAGCAACACCATCAACACGAAGACCAACAACAACAGCAGCGTAAGCTG
CAGCACTACCACCACCATGTCACCTCTACTGCCAAGCAGGAAGGGGACAC
GGCGAGCGAAGCCAAGACAATGACGCGTATGCTCAAGGACCTCTCCTTCC
CACACCGCCACCACGACGACCAGCAGCAGCAACAGCAGCAGCAGCATAAT
CATCATCATCAGCAGCAGCATAATCACAGTCATCAATACGATATTCTTGA
AACAGGATCAACTAGTTCCACCATTTCCTCCAAGAGCGAGACACTTCATT
ACCAGCAAGAGCAGCAGCAGCAGCAGCGAAAACAAGGGATGAGAAACGGC
AAGCCATGTTTGGTTGGTGGTGCGATGTTGAGCTCTTCCGAGTCCGTCGA
CCAAAGCAAGGGTAAAATCTCCCCTTCCATCGAGACCTACCAGCAGCAGC
AGCGACAGCAGGAGCAGCAGCAGCAGCCCTGGAAGGACAAGCAGCCGCTC
CGGATTGGCCAGGCTCTTATGCCCGTCATCAAGCCGCAGCAGAGGAAGAA
GAAGCAGCAGCAGCAGCAACAGCAGCAACAGCAACAGCAGCAGCAACAAC
AGCAGCCGCTTTCTCTTTTCCCTGCGGCCTCTTTGGCTTCCCCGGCTTCG
CAGTCCAGCCATGACACCAAGACCACCACCTGCTCTGGTGCCTCCTTCTC
CTCCTCCAACACATTATCCCTCCCCTCCTCCGCCGCCTCCTCTTTCAAAC
CACTCTTCGCTACCACCATAAATAGCAGTAGCAGCAGCAACAAAATTGCC
GCGGCTGTTGCTACTGCTGCGGCTCCTGATACCACAACAGCGACTATGGC
AGAAGGAAGAAAGGAAGTAAAAGAAGGGAGGAATTGGGGTGGGACTGGAA
GTCAGCGTTATACGCGGAAGTGTCGATTTTTCGGGAAAGGCGATGGATGT
AAGGATGGCGTGGCGTGTTTATTTAGGCATGATTTTGGATCAGCAGGAGG
GAAGATCGTTTAA
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protein sequence of NO06G02930.1

>NO06G02930.1-protein ID=NO06G02930.1-protein|Name=NO06G02930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1208bp
MKVNEAFSLLGLSPSPPPDEGAMRRAFKRLALPFLALGEGDSLRHTNLWE
LCEAYEVLMHINHEVDVGNGGQGKGYDDEEERGSLEDEEEAYFFDDDGEV
DELLRLHAQHRRRQRHILATTPHPTAAIVASPAVDATSSSSLAQSVSLPC
TTSTGKNIVWISGRPYFLAPTIGFNGGTSPLPPPPQQQRQQQIAKAAIDD
DEIRARRAMEANERRERREQLMAEEKTRRAREEERETRRKARMEQRRKEK
EENGEAKLVTFADAIQAAVDGKFAHFLSLVESVKRSGGGGREGGREGGWE
VNLNYYHDFLGSRDGRRMTLLHACVTPWRRGRTGAGSRRRRRLSDSVQGE
EDQQQDQQQQQQQREEQEEAAWQMLLQELPEAHRGRLNIAAFLLEVDKGA
GYSLFDLSKDQDDQGRMLMHAVAEACDAPYLRLLLRHKKMSGREGGRKGK
FVLDLNLLSGLNLSPLHYAAVSAGMETVDLLIRHGASVLVRVGGGCRLGG
EGRGLGGGGETPLEMVQSCLDGDAIEEDEEEEIIVCSGAEGREGEARYGL
ESRRARLQQVAAYLTAAAAARHLTLWQKKEEARERREERKREAEEAALRR
DGEQKWMQAAERKAAELTLDRKVHQETEVKKNKNKNKFQKQGGGSSNEGT
GASVLPTAVTSASAAGPQSSSSCSSLVLAVPRPASSSQQSVPCPVVSSSS
TTTTFPPLPSTSELVTNILFPNVAAPTTITIPPLAAPSTSANSAIPPSSN
PLPPLSAPVQALFKQARVEEKKRKKFEKFCEKIALKETLAMMAEDEAMRI
LIRKEAEIKLKAARELLALAEEEVGAVEAAIAVAPAVVITASNTDISSLS
SRSSSLFSSPSVTGAGGTEKQQQHHQHEDQQQQQRKLQHYHHHVTSTAKQ
EGDTASEAKTMTRMLKDLSFPHRHHDDQQQQQQQQHNHHHQQQHNHSHQY
DILETGSTSSTISSKSETLHYQQEQQQQQRKQGMRNGKPCLVGGAMLSSS
ESVDQSKGKISPSIETYQQQQRQQEQQQQPWKDKQPLRIGQALMPVIKPQ
QRKKKQQQQQQQQQQQQQQQQQPLSLFPAASLASPASQSSHDTKTTTCSG
ASFSSSNTLSLPSSAASSFKPLFATTINSSSSSNKIAAAVATAAAPDTTT
ATMAEGRKEVKEGRNWGGTGSQRYTRKCRFFGKGDGCKDGVACLFRHDFG
SAGGKIV*
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Synonyms
Publications