NO06G02680, NO06G02680 (gene) Nannochloropsis oceanica

Overview
NameNO06G02680
Unique NameNO06G02680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1780
Alignment locationchr6:758665..760444 +

Link to JBrowse

Properties
Property NameValue
DescriptionRetinol dehydrogenase 13
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:758665..760444 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036291NAD(P)-bd_dom_sf
IPR002347Glc/ribitol_DH
Homology
BLAST of NO06G02680 vs. NCBI_GenBank
Match: XP_023249434.1 (retinol dehydrogenase 13-like [Seriola lalandi dorsalis])

HSP 1 Score: 223.0 bits (567), Expect = 1.400e-54
Identity = 127/303 (41.91%), Postives = 173/303 (57.10%), Query Frame = 0
Query:   11 IVLAIGSKYAKRKLPLVPVNLEGKHFIVTGASAGIGKETVRTLAQWNASVVMAVRNTNKGNAVLEDIRASLGGGSIPVEVWEMDLAKFESVRAFAAKYLESSRPLDVLINNAGLVSWDYIITEDGHELTHQTNHLGHFLLTKLLMGPLQASAPSRVIQVSSEAHYMGKIDLDNLESSNETYNHFATYGNTKLMNVLFGNELNRRFKDSGVVSTSLHPGFVQTEFLRDVPEW---LIPISKAACALFARDEMEGAKTQIMAATAPEYESVGGVYFDSCAPKQPNKLALDEALATAFWEKSEEAI 311
            I +A+  K+    +    V L+GK  ++TGA+ GIGKET R LA+  A VVMA R+  +     E+IR + G G++ +    +DLA   SVR FA  +L+S   LD+LINNAG++     +TEDG E     NHLGHFLLT LL+  L++SAPSRV+ VSS AH  G+IDLD+L  S  TY+   +Y  +KL NVLF  EL RR + SGV S  LHPG ++TE  R V  W   L  +      L  +   +G++T +  A  P  E   G YF  CA K+      D+ +A   WE+S   +
Sbjct:   51 ICVAVLRKWIAGGVCRCSVRLDGKTILITGANTGIGKETSRDLARRGARVVMACRDLTRAERAAEEIRRTTGNGNVVIR--HLDLASVYSVRQFAKDFLDSEDRLDILINNAGVMMCPKWLTEDGFETQLAVNHLGHFLLTNLLLPKLKSSAPSRVVNVSSIAHRGGRIDLDDLFFSRRTYSSLESYRQSKLANVLFSRELARRLRGSGVSSFCLHPGVIRTELGRHVHGWFPLLGALLSLPSLLLMKTPAQGSQTTVYCAVTPGLEERSGRYFSDCAEKEVAPEGQDDVVARKLWEESSRLV 351          
BLAST of NO06G02680 vs. NCBI_GenBank
Match: XP_019647856.1 (PREDICTED: retinol dehydrogenase 14-like [Branchiostoma belcheri])

HSP 1 Score: 222.6 bits (566), Expect = 1.800e-54
Identity = 127/287 (44.25%), Postives = 173/287 (60.28%), Query Frame = 0
Query:   31 LEGKHFIVTGASAGIGKETVRTLAQWNASVVMAVRNTNKGNAVLEDIRASLGGGSIPVEVWEMDLAKFESVRAFAAKYLESSRPLDVLINNAGLVSWDYIITEDGHELTHQTNHLGHFLLTKLLMGPLQASAPSRVIQVSSEAHYMGKIDLDNLESSNETYNHFATYGNTKLMNVLFGNELNRRFKDSGVVSTSLHPGFVQTEFLRDVPE---WLI----PISKAACALFARDEMEGAKTQIMAATAPEYESVGGVYFDSCAPKQPNKLALDEALATAFWEKSEEAI 311
            L+GK  IVTGA+AGIGKET R LA   A V++A R+T+K     +DIR + G G++ VE  E++LA   SVR FAA+  +    LDVLINNA + +    +TEDG E    TNHLGHFLLT LL+  L+ SAPSRV+ VS+  +  GKID D++ +S ++Y+    Y  +KL NVLF  EL RR + +GV + +LHPG V TE  R+      W++    P   A   LFA+   +GA+T +  A   E E+  GVYF  C P +   +  D+A A   W+ SEE +
Sbjct:    8 LDGKTAIVTGANAGIGKETARALAAKGARVILACRDTSKAETAAKDIRETTGNGNVVVE--ELNLASLASVRKFAARIKKRETSLDVLINNAAVSACPKWVTEDGFERQFATNHLGHFLLTNLLLDLLKKSAPSRVVIVSAVLYKRGKIDFDDI-NSEKSYSPHGAYCQSKLANVLFMRELARRLEGTGVTANALHPGVVDTELSRNFSTTLGWIMLLLGPFFTAWVYLFAKTAKQGAETSVHLAVDKELETTSGVYFSDCKPNELAPVGKDDATAKKLWQISEEMV 291          
BLAST of NO06G02680 vs. NCBI_GenBank
Match: XP_024000143.1 (retinol dehydrogenase 12-like [Salvelinus alpinus])

HSP 1 Score: 222.6 bits (566), Expect = 1.800e-54
Identity = 125/288 (43.40%), Postives = 164/288 (56.94%), Query Frame = 0
Query:   29 VNLEGKHFIVTGASAGIGKETVRTLAQWNASVVMAVRNTNKGNAVLEDIRASLGGGSIPVEVWEMDLAKFESVRAFAAKYLESSRPLDVLINNAGLVSWDYIITEDGHELTHQTNHLGHFLLTKLLMGPLQASAPSRVIQVSSEAHYMGKIDLDNLESSNETYNHFATYGNTKLMNVLFGNELNRRFKDSGVVSTSLHPGFVQTEFLRDVPEW---LIPISKAACALFARDEMEGAKTQIMAATAPEYESVGGVYFDSCAPKQPNKLALDEALATAFWEKSEEAINKV 314
            V L GK  +VTGA+ GIGKET R +A+  A VVMA R+  +  +  ++IR + G  +I V    +DLA   SVR  A ++  S   LD+LINNAG++     +TEDG E     NHLGHFLLT LL+G L++SAPSRV+ VSS AH  GKI  D+L  +   YN   +Y  +KL NVLF  EL RR K +GV S SLHPG ++TE  R V  W   L  I  A   L  +   +GA+T I  A  P  E   G YF  CA  +      D+A+A   W++S   +  +
Sbjct:   40 VQLRGKTVLVTGANTGIGKETCRDMARRGARVVMACRDLTRAASAADEIRQATGNSNIVVR--HLDLASMYSVRELAKEFTASEDRLDILINNAGVMMCPKWLTEDGFETQLAVNHLGHFLLTNLLLGKLKSSAPSRVVNVSSIAHKGGKIQFDDLFFAKRPYNSLVSYRQSKLANVLFSRELARRLKGTGVTSYSLHPGVIRTELTRHVETWFPMLRAILSAPSVLLMKTPTQGAQTSIYCAVTPGLEHKSGSYFSDCAMTETAPEGRDDAVAKRLWKESARLVGYI 325          
BLAST of NO06G02680 vs. NCBI_GenBank
Match: XP_005744155.1 (PREDICTED: retinol dehydrogenase 12-like [Pundamilia nyererei])

HSP 1 Score: 222.2 bits (565), Expect = 2.400e-54
Identity = 125/303 (41.25%), Postives = 169/303 (55.78%), Query Frame = 0
Query:   11 IVLAIGSKYAKRKLPLVPVNLEGKHFIVTGASAGIGKETVRTLAQWNASVVMAVRNTNKGNAVLEDIRASLGGGSIPVEVWEMDLAKFESVRAFAAKYLESSRPLDVLINNAGLVSWDYIITEDGHELTHQTNHLGHFLLTKLLMGPLQASAPSRVIQVSSEAHYMGKIDLDNLESSNETYNHFATYGNTKLMNVLFGNELNRRFKDSGVVSTSLHPGFVQTEFLRDVPEWLIPIS---KAACALFARDEMEGAKTQIMAATAPEYESVGGVYFDSCAPKQPNKLALDEALATAFWEKSEEAI 311
            I +A+  K+    +    V L+GK  ++TGA+AGIGKET R LA+  A VVMA R+  +     E+IR S G G++ +    +DLA   S+R FA  +L+S   LD+LINNAG++     +TED  E     NHLGHFLLT LL+  L++S+PSRV+ VSS AH  G+ID D+L  S   Y    +Y  +KL N+LF  EL RR   SGV S SLHPG ++TE  R V  W   +    K    L  +   EG +T +  A  P  E + G YF  CA K+      D+ +A   WE S   +
Sbjct:   46 ICVAVLRKWIAGGVCRCSVRLDGKTVVITGANAGIGKETSRDLARRGARVVMACRDLTRAERAAEEIRRSTGNGNVVIR--HLDLASTYSIRQFAKDFLDSEERLDILINNAGVMMCPKQLTEDNFETQLAVNHLGHFLLTNLLLPKLKSSSPSRVVNVSSVAHRGGRIDFDDLFFSRRPYGALESYRQSKLANILFSRELARRLSGSGVSSFSLHPGVIRTELGRHVEGWFPLVGLLLKLPSLLLMKTPWEGCQTSLYCAVTPGLEELSGCYFSDCAEKETAPEGQDDVVARKLWEVSTRLV 346          
BLAST of NO06G02680 vs. NCBI_GenBank
Match: XP_008296569.1 (PREDICTED: retinol dehydrogenase 12-like isoform X1 [Stegastes partitus])

HSP 1 Score: 221.5 bits (563), Expect = 4.100e-54
Identity = 127/303 (41.91%), Postives = 171/303 (56.44%), Query Frame = 0
Query:   11 IVLAIGSKYAKRKLPLVPVNLEGKHFIVTGASAGIGKETVRTLAQWNASVVMAVRNTNKGNAVLEDIRASLGGGSIPVEVWEMDLAKFESVRAFAAKYLESSRPLDVLINNAGLVSWDYIITEDGHELTHQTNHLGHFLLTKLLMGPLQASAPSRVIQVSSEAHYMGKIDLDNLESSNETYNHFATYGNTKLMNVLFGNELNRRFKDSGVVSTSLHPGFVQTEFLRDVPEW---LIPISKAACALFARDEMEGAKTQIMAATAPEYESVGGVYFDSCAPKQPNKLALDEALATAFWEKSEEAI 311
            I +A+  K+    +    V L+GK  ++TGA+ GIGKET R +AQ  A VVMA R+  +     E++R S G G++ +    +DLA   SV+ FA  +L+S   LD+LINNAG++     +TEDG E     NHLGHFLLT LL+  L++SAPSRVI VSS AH  G+ID D+L  S  TY+   +Y  +KL NVLF  EL  R K SGV S SLHPG ++TE  R V  W   L  + +    L  +   +G +T +  A  P  E   G YF  CA K+      D+  A   WE+S   +
Sbjct:   52 ICMAVLRKWIGGGVCRCSVRLDGKTVLITGANTGIGKETSRDMAQRGARVVMACRDLTRAERAAEEVRRSTGNGNVVIR--HLDLASVYSVKQFAKDFLDSEDRLDILINNAGVMMCPKWLTEDGFETQLAVNHLGHFLLTNLLVPKLKSSAPSRVINVSSIAHQGGRIDFDDLFFSRRTYSSLESYRQSKLANVLFSRELACRLKGSGVSSFSLHPGVIRTELGRHVEGWFPLLGMLLRLPSLLLMKTPWQGCQTTVYCAVTPGLEERSGRYFSDCAEKETAPEGRDDVAARRLWEESARLV 352          
BLAST of NO06G02680 vs. NCBI_GenBank
Match: XP_005935948.1 (PREDICTED: retinol dehydrogenase 12-like isoform X1 [Haplochromis burtoni])

HSP 1 Score: 221.1 bits (562), Expect = 5.300e-54
Identity = 124/303 (40.92%), Postives = 169/303 (55.78%), Query Frame = 0
Query:   11 IVLAIGSKYAKRKLPLVPVNLEGKHFIVTGASAGIGKETVRTLAQWNASVVMAVRNTNKGNAVLEDIRASLGGGSIPVEVWEMDLAKFESVRAFAAKYLESSRPLDVLINNAGLVSWDYIITEDGHELTHQTNHLGHFLLTKLLMGPLQASAPSRVIQVSSEAHYMGKIDLDNLESSNETYNHFATYGNTKLMNVLFGNELNRRFKDSGVVSTSLHPGFVQTEFLRDVPEWLIPIS---KAACALFARDEMEGAKTQIMAATAPEYESVGGVYFDSCAPKQPNKLALDEALATAFWEKSEEAI 311
            I +A+  K+    +    V L+G+  ++TGA+AGIGKET R LA+  A VVMA R+  +     E+IR S G G++ +    +DLA   S+R FA  +L+S   LD+LINNAG++     +TED  E     NHLGHFLLT LL+  L++S+PSRV+ VSS AH  G+ID D+L  S   Y    +Y  +KL N+LF  EL RR   SGV S SLHPG ++TE  R V  W   +    K    L  +   EG +T +  A  P  E + G YF  CA K+      D+ +A   WE S   +
Sbjct:   79 ICVAVLRKWIAGGVCRCSVRLDGRTVVITGANAGIGKETSRDLARRGARVVMACRDLTRAERAAEEIRRSTGNGNVVIR--HLDLASTYSIRQFAKDFLDSEERLDILINNAGVMMCPKQLTEDNFETQLAVNHLGHFLLTNLLLPKLKSSSPSRVVNVSSVAHRGGRIDFDDLFFSRRPYGALESYRQSKLANILFSRELARRLSGSGVSSFSLHPGVIRTELGRHVEGWFPLVGLLLKLPSLLLMKTPWEGCQTSLYCAVTPGLEELSGCYFSDCAEKETAPEGQDDVVARKLWEVSTRLV 379          
BLAST of NO06G02680 vs. NCBI_GenBank
Match: XP_005935949.1 (PREDICTED: retinol dehydrogenase 12-like isoform X2 [Haplochromis burtoni])

HSP 1 Score: 221.1 bits (562), Expect = 5.300e-54
Identity = 124/303 (40.92%), Postives = 169/303 (55.78%), Query Frame = 0
Query:   11 IVLAIGSKYAKRKLPLVPVNLEGKHFIVTGASAGIGKETVRTLAQWNASVVMAVRNTNKGNAVLEDIRASLGGGSIPVEVWEMDLAKFESVRAFAAKYLESSRPLDVLINNAGLVSWDYIITEDGHELTHQTNHLGHFLLTKLLMGPLQASAPSRVIQVSSEAHYMGKIDLDNLESSNETYNHFATYGNTKLMNVLFGNELNRRFKDSGVVSTSLHPGFVQTEFLRDVPEWLIPIS---KAACALFARDEMEGAKTQIMAATAPEYESVGGVYFDSCAPKQPNKLALDEALATAFWEKSEEAI 311
            I +A+  K+    +    V L+G+  ++TGA+AGIGKET R LA+  A VVMA R+  +     E+IR S G G++ +    +DLA   S+R FA  +L+S   LD+LINNAG++     +TED  E     NHLGHFLLT LL+  L++S+PSRV+ VSS AH  G+ID D+L  S   Y    +Y  +KL N+LF  EL RR   SGV S SLHPG ++TE  R V  W   +    K    L  +   EG +T +  A  P  E + G YF  CA K+      D+ +A   WE S   +
Sbjct:   46 ICVAVLRKWIAGGVCRCSVRLDGRTVVITGANAGIGKETSRDLARRGARVVMACRDLTRAERAAEEIRRSTGNGNVVIR--HLDLASTYSIRQFAKDFLDSEERLDILINNAGVMMCPKQLTEDNFETQLAVNHLGHFLLTNLLLPKLKSSSPSRVVNVSSVAHRGGRIDFDDLFFSRRPYGALESYRQSKLANILFSRELARRLSGSGVSSFSLHPGVIRTELGRHVEGWFPLVGLLLKLPSLLLMKTPWEGCQTSLYCAVTPGLEELSGCYFSDCAEKETAPEGQDDVVARKLWEVSTRLV 346          
BLAST of NO06G02680 vs. NCBI_GenBank
Match: XP_015246769.1 (PREDICTED: retinol dehydrogenase 13-like [Cyprinodon variegatus])

HSP 1 Score: 221.1 bits (562), Expect = 5.300e-54
Identity = 125/285 (43.86%), Postives = 163/285 (57.19%), Query Frame = 0
Query:   29 VNLEGKHFIVTGASAGIGKETVRTLAQWNASVVMAVRNTNKGNAVLEDIRASLGGGSIPVEVWEMDLAKFESVRAFAAKYLESSRPLDVLINNAGLVSWDYIITEDGHELTHQTNHLGHFLLTKLLMGPLQASAPSRVIQVSSEAHYMGKIDLDNLESSNETYNHFATYGNTKLMNVLFGNELNRRFKDSGVVSTSLHPGFVQTEFLRDVPEW---LIPISKAACALFARDEMEGAKTQIMAATAPEYESVGGVYFDSCAPKQPNKLALDEALATAFWEKSEEAI 311
            V L+GK  +VTGA+ GIGKET R LA   A VVMA R+  +     E++R S G G++ +    +DLA   SV  FA  +L+S   LD+LINNAG++     ITEDG E     NHLGHFLLT LL+  L++SAPSRVI VSS AH  G+ID D+L  S   Y+   +Y  +KL NVLF  EL RR K SGV +  LHPG ++TE  R V  W   L  + +    L  +   EG++T +  A  P  E + G YF  CA K+      D+  A   WE+S   +
Sbjct:   65 VRLDGKTVLVTGANTGIGKETCRDLAGRGARVVMACRDLTRAERAAEEVRHSTGNGNVVIR--HLDLASVYSVSQFAKDFLDSEERLDILINNAGVMMCPRWITEDGFETQLAVNHLGHFLLTNLLLPMLKSSAPSRVINVSSIAHQGGRIDFDDLFFSRRPYSALESYRQSKLANVLFTRELARRLKGSGVSAFCLHPGVIRTELSRHVEGWFPLLGALLRIPAWLLMKTPKEGSQTTVFCAVTPGLEELSGKYFSDCAEKEVAPEGRDDEAAQRLWEESARLV 347          
BLAST of NO06G02680 vs. NCBI_GenBank
Match: XP_019643816.1 (PREDICTED: retinol dehydrogenase 13-like [Branchiostoma belcheri])

HSP 1 Score: 221.1 bits (562), Expect = 5.300e-54
Identity = 121/287 (42.16%), Postives = 171/287 (59.58%), Query Frame = 0
Query:   31 LEGKHFIVTGASAGIGKETVRTLAQWNASVVMAVRNTNKGNAVLEDIRASLGGGSIPVEVWEMDLAKFESVRAFAAKYLESSRPLDVLINNAGLVSWDYIITEDGHELTHQTNHLGHFLLTKLLMGPLQASAPSRVIQVSSEAHYMGKIDLDNLESSNETYNHFATYGNTKLMNVLFGNELNRRFKDSGVVSTSLHPGFVQTEFLRDVPE----W---LIPISKAACALFARDEMEGAKTQIMAATAPEYESVGGVYFDSCAPKQPNKLALDEALATAFWEKSEEAI 311
            L+GK  ++TG +AGIGKET R LA+  A V++A R+  +      +IR   G G++ VE  +++LA   SVR FAAK+      LD+LINNAG+++     TEDG E+   TNHLGHFLLT  L+  L+ SAPSRV+ V+S  H +G I  D++ +  E+Y     YG +KL NVLF  EL R+ K +GV + SLHPG + T   R + +    W   + P+     +LF +   +GA+T I  A +   E+  G+YF  CAPK+P   A DEA+A   WE SE+ +
Sbjct:   39 LDGKTVVITGGNAGIGKETARDLAKRGARVILACRDPKRAEEAAAEIRKDTGNGNVVVE--KLNLASLNSVREFAAKFNADESRLDILINNAGIMTCPQWRTEDGFEMQFGTNHLGHFLLTNQLLDKLKTSAPSRVVTVASSGHAVGHIHFDDI-NLEESYTPIKAYGQSKLANVLFTKELARKIKGTGVTAYSLHPGGINTGLQRHLGDSYGWWFTLIKPLFAGGLSLFGKTPQQGAQTTIHCAVSEGLETSSGLYFTDCAPKEPIPEAKDEAVAKKLWELSEKMV 322          
BLAST of NO06G02680 vs. NCBI_GenBank
Match: XP_024660086.1 (retinol dehydrogenase 12-like [Maylandia zebra])

HSP 1 Score: 221.1 bits (562), Expect = 5.300e-54
Identity = 124/303 (40.92%), Postives = 169/303 (55.78%), Query Frame = 0
Query:   11 IVLAIGSKYAKRKLPLVPVNLEGKHFIVTGASAGIGKETVRTLAQWNASVVMAVRNTNKGNAVLEDIRASLGGGSIPVEVWEMDLAKFESVRAFAAKYLESSRPLDVLINNAGLVSWDYIITEDGHELTHQTNHLGHFLLTKLLMGPLQASAPSRVIQVSSEAHYMGKIDLDNLESSNETYNHFATYGNTKLMNVLFGNELNRRFKDSGVVSTSLHPGFVQTEFLRDVPEWLIPIS---KAACALFARDEMEGAKTQIMAATAPEYESVGGVYFDSCAPKQPNKLALDEALATAFWEKSEEAI 311
            I +A+  K+    +    V L+G+  ++TGA+AGIGKET R LA+  A VVMA R+  +     E+IR S G G++ +    +DLA   S+R FA  +L+S   LD+LINNAG++     +TED  E     NHLGHFLLT LL+  L++S+PSRV+ VSS AH  G+ID D+L  S   Y    +Y  +KL N+LF  EL RR   SGV S SLHPG ++TE  R V  W   +    K    L  +   EG +T +  A  P  E + G YF  CA K+      D+ +A   WE S   +
Sbjct:   13 ICVAVLRKWIAGGVCRCSVRLDGRTVVITGANAGIGKETSRDLARRGARVVMACRDLTRAERAAEEIRRSTGNGNVVIR--HLDLASTYSIRQFAKDFLDSEERLDILINNAGVMMCPKQLTEDNFETQLAVNHLGHFLLTNLLLPKLKSSSPSRVVNVSSVAHRGGRIDFDDLFFSRRPYGALESYRQSKLANILFSRELARRLSGSGVSSFSLHPGVIRTELGRHVEGWFPLVGLLLKLPSLLLMKTPWEGCQTSLYCAVTPGLEELSGCYFSDCAEKETAPEGQDDVVARKLWEVSTRLV 313          
The following BLAST results are available for this feature:
BLAST of NO06G02680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_023249434.11.400e-5441.91retinol dehydrogenase 13-like [Seriola lalandi dor... [more]
XP_019647856.11.800e-5444.25PREDICTED: retinol dehydrogenase 14-like [Branchio... [more]
XP_024000143.11.800e-5443.40retinol dehydrogenase 12-like [Salvelinus alpinus][more]
XP_005744155.12.400e-5441.25PREDICTED: retinol dehydrogenase 12-like [Pundamil... [more]
XP_008296569.14.100e-5441.91PREDICTED: retinol dehydrogenase 12-like isoform X... [more]
XP_005935948.15.300e-5440.92PREDICTED: retinol dehydrogenase 12-like isoform X... [more]
XP_005935949.15.300e-5440.92PREDICTED: retinol dehydrogenase 12-like isoform X... [more]
XP_015246769.15.300e-5443.86PREDICTED: retinol dehydrogenase 13-like [Cyprinod... [more]
XP_019643816.15.300e-5442.16PREDICTED: retinol dehydrogenase 13-like [Branchio... [more]
XP_024660086.15.300e-5440.92retinol dehydrogenase 12-like [Maylandia zebra][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000189NSK000189Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02680.1NO06G02680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597432gene_6594Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100073g10gene4244Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02680.1NO06G02680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02680 ID=NO06G02680|Name=NO06G02680|organism=Nannochloropsis oceanica|type=gene|length=1780bp
CGGATCTGTCTCCATGCCTTTGCTTCTTTTGTTCAATCTTGACTTCTACT
ACCATCCAATTACGTACAAATTCCAGTCAAAATTTAGATCCCTCTTCCTT
CCAGTGGAGGTGCCCTTGCCGGACTTGGCACAGCGTGCAAACAAGGCTAT
AGGTCGCCACACTTCCAAGTTCATCATGTCCGTGAGTCACGTTGTCACGT
CGGTCCCACGAATCATGTTCTTCGTCAGCAGCCCCCCCTTTGCCGGCGGA
GCGGGACCGCTCGTCAAAACTACACGTAGCCCGCACGCGCACCAGACTTT
TGCACGCCTAGCAGGCCATCTTGGCTTGTATTTTTTAGGGTGCTTGCTCG
CGGAGGATCGAGCAGACCGACATACACAAGGCGAAGGCCGCCTGTACGCC
TGGGACACATATCCATGTGGACGCGTACGCATCCCCCCCCCTCCCCACGC
GAACACTCACACATGCCCACACACACATACACACATAGGACAATAGTTTA
AATTTGCTTCAAATCATGCTCAAATGGCTCGTTGTTGCCCTCGCCATTGT
CCTGGCTATTGGCTCAAAGTATGCGAAGAGGAAGCTTCCCTTGGTGCCCG
TCAACTTGGAAGGCAAGCATTTCATTGTCACTGGCGCCAGTGCCGGTATC
GGCAAGGAAACCGTCCGTACCCTAGCACAATGGAACGCCAGTGTGGTCAT
GGCCGTACGTAACACAAACAAGGGTAACGCCGTGCTGGAGGACATCCGCG
CATCGCTTGGAGGAGGCAGTATTCCCGTGGAAGTATGGGAGATGGATTTA
GCGAAATTTGAATCCGTTCGGGCGTTCGCTGCCAAGTACCTGGAATCTAG
TCGCCCTTTAGATGTTTTGATCAACAATGCGGGGCTGGTCTCGTGGGATT
ATATCATAACGGAGGATGGTCATGAGCTCACTCACCAGACTAATCACCTC
GGGCATTTCTTGCTTACCAAGCTTTTGATGGGCCCGCTCCAGGCCTCGGC
GCCCTCGCGAGTGATTCAAGTTTCTTCAGAAGCTCACTATATGGGCAAGA
TCGATTTGGgtgagtcggagagggggagggggcagtgaggatgatggctt
tgcgaagcatcaccgttgaaatgcagcatccttccttccttctctcttac
gtgaccctgcttttttcacttttaccgacacagACAACCTCGAATCTTCC
AACGAGACCTACAATCACTTTGCCACCTATGGCAACACCAAGCTCATGAA
TGTCCTGTTCGGCAATGAGCTCAACCGCCGCTTCAAGGACTCAGGCGTTG
TCTCCACCTCCCTCCATCCCGGATTCGTCCAAACGGAGTTCCTGAGAGAC
GTCCCTGAATGGCTGATACCAATCAGCAAAGCTGCATGTGCTTTATTTGC
TCGTGATGAAATGGAGGGGGCCAAGACCCAGATCATGGCTGCCACGGCAC
CGGAGTACGAAAGTGTGGGAGGTGTGTATTTTGATTCGTGTGCGCCAAAG
CAACCAAATAAGCTTGCGTTGGACGAGGCGTTGGCCACGGCATTTTGGGA
GAAGTCCGAGGAGGCTATCAACAAAGTGCTGGTTCGAGATGCGGAGGATT
TAGAGGTGCCGGAAGAGCAGATGGAAGAGGAGGTGTTCAAGGATGCCGTC
GAGGCGTAACGAGTGATGTGTATTGGCTGAGGCCTGATATGGGAATTCGG
AAAATAAACTGGACATAAGAAAGTACTATGTTGTTTTATCCTAATTGAAC
TGTTTTCCTTTCGAACCTTGATCATTCAAT
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protein sequence of NO06G02680.1

>NO06G02680.1-protein ID=NO06G02680.1-protein|Name=NO06G02680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MLKWLVVALAIVLAIGSKYAKRKLPLVPVNLEGKHFIVTGASAGIGKETV
RTLAQWNASVVMAVRNTNKGNAVLEDIRASLGGGSIPVEVWEMDLAKFES
VRAFAAKYLESSRPLDVLINNAGLVSWDYIITEDGHELTHQTNHLGHFLL
TKLLMGPLQASAPSRVIQVSSEAHYMGKIDLDNLESSNETYNHFATYGNT
KLMNVLFGNELNRRFKDSGVVSTSLHPGFVQTEFLRDVPEWLIPISKAAC
ALFARDEMEGAKTQIMAATAPEYESVGGVYFDSCAPKQPNKLALDEALAT
AFWEKSEEAINKVLVRDAEDLEVPEEQMEEEVFKDAVEA*
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