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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:758665..760444 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G02680.1 vs.
Match: EWM26286.1 (retinol dehydrogenase 13 [Nannochloropsis gaditana]) HSP 1 Score: 500.0 bits (1286), Expect = 5.900e-138 Identity = 247/328 (75.30%), Postives = 283/328 (86.28%), Query Frame = 0
Query: 1 MLKWLVVALAIVLAIGSKYAKRKLPLVPVNLEGKHFIVTGASAGIGKETVRTLAQWNASVVMAVRNTNKGNAVLEDIRASLGGGSIPVEVWEMDLAKFESVRAFAAKYLESSRPLDVLINNAGLVSWDYIITEDGHELTHQTNHLGHFLLTKLLMGPLQASAPSRVIQVSSEAHYMGKIDLDNLESSNETYNHFATYGNTKLMNVLFGNELNRRFKDSGVVSTSLHPGFVQTEFLRDVPEWLIPISKAACALFARDEMEGAKTQIMAATAPEYESVGGVYFDSCAPKQPNKLALDEALATAFWEKSEEAINKVLVRDAEDL--EVPEE 327
M KWL+V +A++L +GSKYAKRKLPLVPV+L+GKHFIVTGASAGIGKETVRTLA+WNASVVMAVRN KG AVLEDIR S+G +PVEVWEMDL+K SV+ FA +Y +S RPL VLINNAGLVSW+YI+TEDGHELT+QTNHLGHFLLTKLLM L ASAPSRVIQVSS+AH+MGKIDLD+L+SSN+TYN +TY +TKLMNV++ NEL RRFKD GVVSTSLHPGFV TEFLRD+PEW PI A C+LFAR+E+EGAKTQIMAATAP YE VGGVYFD+CAP+ PNKL LDE LA AFW+KSEEAI +LV +ED+ EV EE
Sbjct: 25 MFKWLLVVVAVLLGVGSKYAKRKLPLVPVDLDGKHFIVTGASAGIGKETVRTLAEWNASVVMAVRNVKKGTAVLEDIRLSIGRQDLPVEVWEMDLSKLSSVKDFADRYRDSGRPLHVLINNAGLVSWEYILTEDGHELTYQTNHLGHFLLTKLLMPSLLASAPSRVIQVSSDAHFMGKIDLDHLDSSNDTYNSMSTYAHTKLMNVVYANELTRRFKDVGVVSTSLHPGFVATEFLRDLPEWAQPIKNAMCSLFARNEVEGAKTQIMAATAPAYEGVGGVYFDACAPRVPNKLVLDEHLAAAFWDKSEEAIQHMLVEPSEDMSTEVAEE 352
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G02680.1 ID=NO06G02680.1|Name=NO06G02680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1656bp CGGATCTGTCTCCATGCCTTTGCTTCTTTTGTTCAATCTTGACTTCTACT ACCATCCAATTACGTACAAATTCCAGTCAAAATTTAGATCCCTCTTCCTT CCAGTGGAGGTGCCCTTGCCGGACTTGGCACAGCGTGCAAACAAGGCTAT AGGTCGCCACACTTCCAAGTTCATCATGTCCGTGAGTCACGTTGTCACGT CGGTCCCACGAATCATGTTCTTCGTCAGCAGCCCCCCCTTTGCCGGCGGA GCGGGACCGCTCGTCAAAACTACACGTAGCCCGCACGCGCACCAGACTTT TGCACGCCTAGCAGGCCATCTTGGCTTGTATTTTTTAGGGTGCTTGCTCG CGGAGGATCGAGCAGACCGACATACACAAGGCGAAGGCCGCCTGTACGCC TGGGACACATATCCATGTGGACGCGTACGCATCCCCCCCCCTCCCCACGC GAACACTCACACATGCCCACACACACATACACACATAGGACAATAGTTTA AATTTGCTTCAAATCATGCTCAAATGGCTCGTTGTTGCCCTCGCCATTGT CCTGGCTATTGGCTCAAAGTATGCGAAGAGGAAGCTTCCCTTGGTGCCCG TCAACTTGGAAGGCAAGCATTTCATTGTCACTGGCGCCAGTGCCGGTATC GGCAAGGAAACCGTCCGTACCCTAGCACAATGGAACGCCAGTGTGGTCAT GGCCGTACGTAACACAAACAAGGGTAACGCCGTGCTGGAGGACATCCGCG CATCGCTTGGAGGAGGCAGTATTCCCGTGGAAGTATGGGAGATGGATTTA GCGAAATTTGAATCCGTTCGGGCGTTCGCTGCCAAGTACCTGGAATCTAG TCGCCCTTTAGATGTTTTGATCAACAATGCGGGGCTGGTCTCGTGGGATT ATATCATAACGGAGGATGGTCATGAGCTCACTCACCAGACTAATCACCTC GGGCATTTCTTGCTTACCAAGCTTTTGATGGGCCCGCTCCAGGCCTCGGC GCCCTCGCGAGTGATTCAAGTTTCTTCAGAAGCTCACTATATGGGCAAGA TCGATTTGGACAACCTCGAATCTTCCAACGAGACCTACAATCACTTTGCC ACCTATGGCAACACCAAGCTCATGAATGTCCTGTTCGGCAATGAGCTCAA CCGCCGCTTCAAGGACTCAGGCGTTGTCTCCACCTCCCTCCATCCCGGAT TCGTCCAAACGGAGTTCCTGAGAGACGTCCCTGAATGGCTGATACCAATC AGCAAAGCTGCATGTGCTTTATTTGCTCGTGATGAAATGGAGGGGGCCAA GACCCAGATCATGGCTGCCACGGCACCGGAGTACGAAAGTGTGGGAGGTG TGTATTTTGATTCGTGTGCGCCAAAGCAACCAAATAAGCTTGCGTTGGAC GAGGCGTTGGCCACGGCATTTTGGGAGAAGTCCGAGGAGGCTATCAACAA AGTGCTGGTTCGAGATGCGGAGGATTTAGAGGTGCCGGAAGAGCAGATGG AAGAGGAGGTGTTCAAGGATGCCGTCGAGGCGTAACGAGTGATGTGTATT GGCTGAGGCCTGATATGGGAATTCGGAAAATAAACTGGACATAAGAAAGT ACTATGTTGTTTTATCCTAATTGAACTGTTTTCCTTTCGAACCTTGATCA TTCAAT back to topprotein sequence of NO06G02680.1 >NO06G02680.1-protein ID=NO06G02680.1-protein|Name=NO06G02680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp MLKWLVVALAIVLAIGSKYAKRKLPLVPVNLEGKHFIVTGASAGIGKETV RTLAQWNASVVMAVRNTNKGNAVLEDIRASLGGGSIPVEVWEMDLAKFES VRAFAAKYLESSRPLDVLINNAGLVSWDYIITEDGHELTHQTNHLGHFLL TKLLMGPLQASAPSRVIQVSSEAHYMGKIDLDNLESSNETYNHFATYGNT KLMNVLFGNELNRRFKDSGVVSTSLHPGFVQTEFLRDVPEWLIPISKAAC ALFARDEMEGAKTQIMAATAPEYESVGGVYFDSCAPKQPNKLALDEALAT AFWEKSEEAINKVLVRDAEDLEVPEEQMEEEVFKDAVEA* back to topmRNA from alignment at chr6:758665..760444+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G02680.1 ID=NO06G02680.1|Name=NO06G02680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1780bp|location=Sequence derived from alignment at chr6:758665..760444+ (Nannochloropsis oceanica) CGGATCTGTCTCCATGCCTTTGCTTCTTTTGTTCAATCTTGACTTCTACT
ACCATCCAATTACGTACAAATTCCAGTCAAAATTTAGATCCCTCTTCCTT
CCAGTGGAGGTGCCCTTGCCGGACTTGGCACAGCGTGCAAACAAGGCTAT
AGGTCGCCACACTTCCAAGTTCATCATGTCCGTGAGTCACGTTGTCACGT
CGGTCCCACGAATCATGTTCTTCGTCAGCAGCCCCCCCTTTGCCGGCGGA
GCGGGACCGCTCGTCAAAACTACACGTAGCCCGCACGCGCACCAGACTTT
TGCACGCCTAGCAGGCCATCTTGGCTTGTATTTTTTAGGGTGCTTGCTCG
CGGAGGATCGAGCAGACCGACATACACAAGGCGAAGGCCGCCTGTACGCC
TGGGACACATATCCATGTGGACGCGTACGCATCCCCCCCCCTCCCCACGC
GAACACTCACACATGCCCACACACACATACACACATAGGACAATAGTTTA
AATTTGCTTCAAATCATGCTCAAATGGCTCGTTGTTGCCCTCGCCATTGT
CCTGGCTATTGGCTCAAAGTATGCGAAGAGGAAGCTTCCCTTGGTGCCCG
TCAACTTGGAAGGCAAGCATTTCATTGTCACTGGCGCCAGTGCCGGTATC
GGCAAGGAAACCGTCCGTACCCTAGCACAATGGAACGCCAGTGTGGTCAT
GGCCGTACGTAACACAAACAAGGGTAACGCCGTGCTGGAGGACATCCGCG
CATCGCTTGGAGGAGGCAGTATTCCCGTGGAAGTATGGGAGATGGATTTA
GCGAAATTTGAATCCGTTCGGGCGTTCGCTGCCAAGTACCTGGAATCTAG
TCGCCCTTTAGATGTTTTGATCAACAATGCGGGGCTGGTCTCGTGGGATT
ATATCATAACGGAGGATGGTCATGAGCTCACTCACCAGACTAATCACCTC
GGGCATTTCTTGCTTACCAAGCTTTTGATGGGCCCGCTCCAGGCCTCGGC
GCCCTCGCGAGTGATTCAAGTTTCTTCAGAAGCTCACTATATGGGCAAGA
TCGATTTGGGTGAGTCGGAGAGGGGGAGGGGGCAGTGAGGATGATGGCTT
TGCGAAGCATCACCGTTGAAATGCAGCATCCTTCCTTCCTTCTCTCTTAC
GTGACCCTGCTTTTTTCACTTTTACCGACACAGACAACCTCGAATCTTCC
AACGAGACCTACAATCACTTTGCCACCTATGGCAACACCAAGCTCATGAA
TGTCCTGTTCGGCAATGAGCTCAACCGCCGCTTCAAGGACTCAGGCGTTG
TCTCCACCTCCCTCCATCCCGGATTCGTCCAAACGGAGTTCCTGAGAGAC
GTCCCTGAATGGCTGATACCAATCAGCAAAGCTGCATGTGCTTTATTTGC
TCGTGATGAAATGGAGGGGGCCAAGACCCAGATCATGGCTGCCACGGCAC
CGGAGTACGAAAGTGTGGGAGGTGTGTATTTTGATTCGTGTGCGCCAAAG
CAACCAAATAAGCTTGCGTTGGACGAGGCGTTGGCCACGGCATTTTGGGA
GAAGTCCGAGGAGGCTATCAACAAAGTGCTGGTTCGAGATGCGGAGGATT
TAGAGGTGCCGGAAGAGCAGATGGAAGAGGAGGTGTTCAAGGATGCCGTC
GAGGCGTAACGAGTGATGTGTATTGGCTGAGGCCTGATATGGGAATTCGG
AAAATAAACTGGACATAAGAAAGTACTATGTTGTTTTATCCTAATTGAAC
TGTTTTCCTTTCGAACCTTGATCATTCAAT back to topCoding sequence (CDS) from alignment at chr6:758665..760444+ >NO06G02680.1 ID=NO06G02680.1|Name=NO06G02680.1|organism=Nannochloropsis oceanica|type=CDS|length=1020bp|location=Sequence derived from alignment at chr6:758665..760444+ (Nannochloropsis oceanica) ATGCTCAAATGGCTCGTTGTTGCCCTCGCCATTGTCCTGGCTATTGGCTC AAAGTATGCGAAGAGGAAGCTTCCCTTGGTGCCCGTCAACTTGGAAGGCA AGCATTTCATTGTCACTGGCGCCAGTGCCGGTATCGGCAAGGAAACCGTC CGTACCCTAGCACAATGGAACGCCAGTGTGGTCATGGCCGTACGTAACAC AAACAAGGGTAACGCCGTGCTGGAGGACATCCGCGCATCGCTTGGAGGAG GCAGTATTCCCGTGGAAGTATGGGAGATGGATTTAGCGAAATTTGAATCC GTTCGGGCGTTCGCTGCCAAGTACCTGGAATCTAGTCGCCCTTTAGATGT TTTGATCAACAATGCGGGGCTGGTCTCGTGGGATTATATCATAACGGAGG ATGGTCATGAGCTCACTCACCAGACTAATCACCTCGGGCATTTCTTGCTT ACCAAGCTTTTGATGGGCCCGCTCCAGGCCTCGGCGCCCTCGCGAGTGAT TCAAGTTTCTTCAGAAGCTCACTATATGGGCAAGATCGATTTGGACAACC TCGAATCTTCCAACGAGACCTACAATCACTTTGCCACCTATGGCAACACC AAGCTCATGAATGTCCTGTTCGGCAATGAGCTCAACCGCCGCTTCAAGGA CTCAGGCGTTGTCTCCACCTCCCTCCATCCCGGATTCGTCCAAACGGAGT TCCTGAGAGACGTCCCTGAATGGCTGATACCAATCAGCAAAGCTGCATGT GCTTTATTTGCTCGTGATGAAATGGAGGGGGCCAAGACCCAGATCATGGC TGCCACGGCACCGGAGTACGAAAGTGTGGGAGGTGTGTATTTTGATTCGT GTGCGCCAAAGCAACCAAATAAGCTTGCGTTGGACGAGGCGTTGGCCACG GCATTTTGGGAGAAGTCCGAGGAGGCTATCAACAAAGTGCTGGTTCGAGA TGCGGAGGATTTAGAGGTGCCGGAAGAGCAGATGGAAGAGGAGGTGTTCA AGGATGCCGTCGAGGCGTAA back to top
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