NO06G02680.1, NO06G02680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02680.1
Unique NameNO06G02680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1656
Alignment locationchr6:758665..760444 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:758665..760444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G02680.1 vs.
Match: EWM26286.1 (retinol dehydrogenase 13 [Nannochloropsis gaditana])

HSP 1 Score: 500.0 bits (1286), Expect = 5.900e-138
Identity = 247/328 (75.30%), Postives = 283/328 (86.28%), Query Frame = 0
Query:    1 MLKWLVVALAIVLAIGSKYAKRKLPLVPVNLEGKHFIVTGASAGIGKETVRTLAQWNASVVMAVRNTNKGNAVLEDIRASLGGGSIPVEVWEMDLAKFESVRAFAAKYLESSRPLDVLINNAGLVSWDYIITEDGHELTHQTNHLGHFLLTKLLMGPLQASAPSRVIQVSSEAHYMGKIDLDNLESSNETYNHFATYGNTKLMNVLFGNELNRRFKDSGVVSTSLHPGFVQTEFLRDVPEWLIPISKAACALFARDEMEGAKTQIMAATAPEYESVGGVYFDSCAPKQPNKLALDEALATAFWEKSEEAINKVLVRDAEDL--EVPEE 327
            M KWL+V +A++L +GSKYAKRKLPLVPV+L+GKHFIVTGASAGIGKETVRTLA+WNASVVMAVRN  KG AVLEDIR S+G   +PVEVWEMDL+K  SV+ FA +Y +S RPL VLINNAGLVSW+YI+TEDGHELT+QTNHLGHFLLTKLLM  L ASAPSRVIQVSS+AH+MGKIDLD+L+SSN+TYN  +TY +TKLMNV++ NEL RRFKD GVVSTSLHPGFV TEFLRD+PEW  PI  A C+LFAR+E+EGAKTQIMAATAP YE VGGVYFD+CAP+ PNKL LDE LA AFW+KSEEAI  +LV  +ED+  EV EE
Sbjct:   25 MFKWLLVVVAVLLGVGSKYAKRKLPLVPVDLDGKHFIVTGASAGIGKETVRTLAEWNASVVMAVRNVKKGTAVLEDIRLSIGRQDLPVEVWEMDLSKLSSVKDFADRYRDSGRPLHVLINNAGLVSWEYILTEDGHELTYQTNHLGHFLLTKLLMPSLLASAPSRVIQVSSDAHFMGKIDLDHLDSSNDTYNSMSTYAHTKLMNVVYANELTRRFKDVGVVSTSLHPGFVATEFLRDLPEWAQPIKNAMCSLFARNEVEGAKTQIMAATAPAYEGVGGVYFDACAPRVPNKLVLDEHLAAAFWDKSEEAIQHMLVEPSEDMSTEVAEE 352          
The following BLAST results are available for this feature:
BLAST of NO06G02680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26286.15.900e-13875.30retinol dehydrogenase 13 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02680NO06G02680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02680.1NO06G02680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02680.1.cds1NO06G02680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02680.1.cds2NO06G02680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02680.1 ID=NO06G02680.1|Name=NO06G02680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1656bp
CGGATCTGTCTCCATGCCTTTGCTTCTTTTGTTCAATCTTGACTTCTACT
ACCATCCAATTACGTACAAATTCCAGTCAAAATTTAGATCCCTCTTCCTT
CCAGTGGAGGTGCCCTTGCCGGACTTGGCACAGCGTGCAAACAAGGCTAT
AGGTCGCCACACTTCCAAGTTCATCATGTCCGTGAGTCACGTTGTCACGT
CGGTCCCACGAATCATGTTCTTCGTCAGCAGCCCCCCCTTTGCCGGCGGA
GCGGGACCGCTCGTCAAAACTACACGTAGCCCGCACGCGCACCAGACTTT
TGCACGCCTAGCAGGCCATCTTGGCTTGTATTTTTTAGGGTGCTTGCTCG
CGGAGGATCGAGCAGACCGACATACACAAGGCGAAGGCCGCCTGTACGCC
TGGGACACATATCCATGTGGACGCGTACGCATCCCCCCCCCTCCCCACGC
GAACACTCACACATGCCCACACACACATACACACATAGGACAATAGTTTA
AATTTGCTTCAAATCATGCTCAAATGGCTCGTTGTTGCCCTCGCCATTGT
CCTGGCTATTGGCTCAAAGTATGCGAAGAGGAAGCTTCCCTTGGTGCCCG
TCAACTTGGAAGGCAAGCATTTCATTGTCACTGGCGCCAGTGCCGGTATC
GGCAAGGAAACCGTCCGTACCCTAGCACAATGGAACGCCAGTGTGGTCAT
GGCCGTACGTAACACAAACAAGGGTAACGCCGTGCTGGAGGACATCCGCG
CATCGCTTGGAGGAGGCAGTATTCCCGTGGAAGTATGGGAGATGGATTTA
GCGAAATTTGAATCCGTTCGGGCGTTCGCTGCCAAGTACCTGGAATCTAG
TCGCCCTTTAGATGTTTTGATCAACAATGCGGGGCTGGTCTCGTGGGATT
ATATCATAACGGAGGATGGTCATGAGCTCACTCACCAGACTAATCACCTC
GGGCATTTCTTGCTTACCAAGCTTTTGATGGGCCCGCTCCAGGCCTCGGC
GCCCTCGCGAGTGATTCAAGTTTCTTCAGAAGCTCACTATATGGGCAAGA
TCGATTTGGACAACCTCGAATCTTCCAACGAGACCTACAATCACTTTGCC
ACCTATGGCAACACCAAGCTCATGAATGTCCTGTTCGGCAATGAGCTCAA
CCGCCGCTTCAAGGACTCAGGCGTTGTCTCCACCTCCCTCCATCCCGGAT
TCGTCCAAACGGAGTTCCTGAGAGACGTCCCTGAATGGCTGATACCAATC
AGCAAAGCTGCATGTGCTTTATTTGCTCGTGATGAAATGGAGGGGGCCAA
GACCCAGATCATGGCTGCCACGGCACCGGAGTACGAAAGTGTGGGAGGTG
TGTATTTTGATTCGTGTGCGCCAAAGCAACCAAATAAGCTTGCGTTGGAC
GAGGCGTTGGCCACGGCATTTTGGGAGAAGTCCGAGGAGGCTATCAACAA
AGTGCTGGTTCGAGATGCGGAGGATTTAGAGGTGCCGGAAGAGCAGATGG
AAGAGGAGGTGTTCAAGGATGCCGTCGAGGCGTAACGAGTGATGTGTATT
GGCTGAGGCCTGATATGGGAATTCGGAAAATAAACTGGACATAAGAAAGT
ACTATGTTGTTTTATCCTAATTGAACTGTTTTCCTTTCGAACCTTGATCA
TTCAAT
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protein sequence of NO06G02680.1

>NO06G02680.1-protein ID=NO06G02680.1-protein|Name=NO06G02680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MLKWLVVALAIVLAIGSKYAKRKLPLVPVNLEGKHFIVTGASAGIGKETV
RTLAQWNASVVMAVRNTNKGNAVLEDIRASLGGGSIPVEVWEMDLAKFES
VRAFAAKYLESSRPLDVLINNAGLVSWDYIITEDGHELTHQTNHLGHFLL
TKLLMGPLQASAPSRVIQVSSEAHYMGKIDLDNLESSNETYNHFATYGNT
KLMNVLFGNELNRRFKDSGVVSTSLHPGFVQTEFLRDVPEWLIPISKAAC
ALFARDEMEGAKTQIMAATAPEYESVGGVYFDSCAPKQPNKLALDEALAT
AFWEKSEEAINKVLVRDAEDLEVPEEQMEEEVFKDAVEA*
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mRNA from alignment at chr6:758665..760444+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02680.1 ID=NO06G02680.1|Name=NO06G02680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1780bp|location=Sequence derived from alignment at chr6:758665..760444+ (Nannochloropsis oceanica)
CGGATCTGTCTCCATGCCTTTGCTTCTTTTGTTCAATCTTGACTTCTACT ACCATCCAATTACGTACAAATTCCAGTCAAAATTTAGATCCCTCTTCCTT CCAGTGGAGGTGCCCTTGCCGGACTTGGCACAGCGTGCAAACAAGGCTAT AGGTCGCCACACTTCCAAGTTCATCATGTCCGTGAGTCACGTTGTCACGT CGGTCCCACGAATCATGTTCTTCGTCAGCAGCCCCCCCTTTGCCGGCGGA GCGGGACCGCTCGTCAAAACTACACGTAGCCCGCACGCGCACCAGACTTT TGCACGCCTAGCAGGCCATCTTGGCTTGTATTTTTTAGGGTGCTTGCTCG CGGAGGATCGAGCAGACCGACATACACAAGGCGAAGGCCGCCTGTACGCC TGGGACACATATCCATGTGGACGCGTACGCATCCCCCCCCCTCCCCACGC GAACACTCACACATGCCCACACACACATACACACATAGGACAATAGTTTA AATTTGCTTCAAATCATGCTCAAATGGCTCGTTGTTGCCCTCGCCATTGT CCTGGCTATTGGCTCAAAGTATGCGAAGAGGAAGCTTCCCTTGGTGCCCG TCAACTTGGAAGGCAAGCATTTCATTGTCACTGGCGCCAGTGCCGGTATC GGCAAGGAAACCGTCCGTACCCTAGCACAATGGAACGCCAGTGTGGTCAT GGCCGTACGTAACACAAACAAGGGTAACGCCGTGCTGGAGGACATCCGCG CATCGCTTGGAGGAGGCAGTATTCCCGTGGAAGTATGGGAGATGGATTTA GCGAAATTTGAATCCGTTCGGGCGTTCGCTGCCAAGTACCTGGAATCTAG TCGCCCTTTAGATGTTTTGATCAACAATGCGGGGCTGGTCTCGTGGGATT ATATCATAACGGAGGATGGTCATGAGCTCACTCACCAGACTAATCACCTC GGGCATTTCTTGCTTACCAAGCTTTTGATGGGCCCGCTCCAGGCCTCGGC GCCCTCGCGAGTGATTCAAGTTTCTTCAGAAGCTCACTATATGGGCAAGA TCGATTTGGGTGAGTCGGAGAGGGGGAGGGGGCAGTGAGGATGATGGCTT TGCGAAGCATCACCGTTGAAATGCAGCATCCTTCCTTCCTTCTCTCTTAC GTGACCCTGCTTTTTTCACTTTTACCGACACAGACAACCTCGAATCTTCC AACGAGACCTACAATCACTTTGCCACCTATGGCAACACCAAGCTCATGAA TGTCCTGTTCGGCAATGAGCTCAACCGCCGCTTCAAGGACTCAGGCGTTG TCTCCACCTCCCTCCATCCCGGATTCGTCCAAACGGAGTTCCTGAGAGAC GTCCCTGAATGGCTGATACCAATCAGCAAAGCTGCATGTGCTTTATTTGC TCGTGATGAAATGGAGGGGGCCAAGACCCAGATCATGGCTGCCACGGCAC CGGAGTACGAAAGTGTGGGAGGTGTGTATTTTGATTCGTGTGCGCCAAAG CAACCAAATAAGCTTGCGTTGGACGAGGCGTTGGCCACGGCATTTTGGGA GAAGTCCGAGGAGGCTATCAACAAAGTGCTGGTTCGAGATGCGGAGGATT TAGAGGTGCCGGAAGAGCAGATGGAAGAGGAGGTGTTCAAGGATGCCGTC GAGGCGTAACGAGTGATGTGTATTGGCTGAGGCCTGATATGGGAATTCGG AAAATAAACTGGACATAAGAAAGTACTATGTTGTTTTATCCTAATTGAAC TGTTTTCCTTTCGAACCTTGATCATTCAAT
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Coding sequence (CDS) from alignment at chr6:758665..760444+

>NO06G02680.1 ID=NO06G02680.1|Name=NO06G02680.1|organism=Nannochloropsis oceanica|type=CDS|length=1020bp|location=Sequence derived from alignment at chr6:758665..760444+ (Nannochloropsis oceanica)
ATGCTCAAATGGCTCGTTGTTGCCCTCGCCATTGTCCTGGCTATTGGCTC
AAAGTATGCGAAGAGGAAGCTTCCCTTGGTGCCCGTCAACTTGGAAGGCA
AGCATTTCATTGTCACTGGCGCCAGTGCCGGTATCGGCAAGGAAACCGTC
CGTACCCTAGCACAATGGAACGCCAGTGTGGTCATGGCCGTACGTAACAC
AAACAAGGGTAACGCCGTGCTGGAGGACATCCGCGCATCGCTTGGAGGAG
GCAGTATTCCCGTGGAAGTATGGGAGATGGATTTAGCGAAATTTGAATCC
GTTCGGGCGTTCGCTGCCAAGTACCTGGAATCTAGTCGCCCTTTAGATGT
TTTGATCAACAATGCGGGGCTGGTCTCGTGGGATTATATCATAACGGAGG
ATGGTCATGAGCTCACTCACCAGACTAATCACCTCGGGCATTTCTTGCTT
ACCAAGCTTTTGATGGGCCCGCTCCAGGCCTCGGCGCCCTCGCGAGTGAT
TCAAGTTTCTTCAGAAGCTCACTATATGGGCAAGATCGATTTGGACAACC
TCGAATCTTCCAACGAGACCTACAATCACTTTGCCACCTATGGCAACACC
AAGCTCATGAATGTCCTGTTCGGCAATGAGCTCAACCGCCGCTTCAAGGA
CTCAGGCGTTGTCTCCACCTCCCTCCATCCCGGATTCGTCCAAACGGAGT
TCCTGAGAGACGTCCCTGAATGGCTGATACCAATCAGCAAAGCTGCATGT
GCTTTATTTGCTCGTGATGAAATGGAGGGGGCCAAGACCCAGATCATGGC
TGCCACGGCACCGGAGTACGAAAGTGTGGGAGGTGTGTATTTTGATTCGT
GTGCGCCAAAGCAACCAAATAAGCTTGCGTTGGACGAGGCGTTGGCCACG
GCATTTTGGGAGAAGTCCGAGGAGGCTATCAACAAAGTGCTGGTTCGAGA
TGCGGAGGATTTAGAGGTGCCGGAAGAGCAGATGGAAGAGGAGGTGTTCA
AGGATGCCGTCGAGGCGTAA
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Synonyms
Publications