NO06G02640, NO06G02640 (gene) Nannochloropsis oceanica

Overview
NameNO06G02640
Unique NameNO06G02640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1108
Alignment locationchr6:745871..746978 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:745871..746978 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO06G02640 vs. NCBI_GenBank
Match: EWM26291.1 (hypothetical protein Naga_100073g6 [Nannochloropsis gaditana])

HSP 1 Score: 243.8 bits (621), Expect = 5.600e-61
Identity = 129/218 (59.17%), Postives = 162/218 (74.31%), Query Frame = 0 
Query:   30 SSSPIHTQSSQSFQLRMKLAGVEDTATSSTTTDSLPSRASFLDTIRLSRKVATGTTTFLLGSATGQLLNPALPAAQAADLTPLPAEFKTAVINMREAVFPINLRDAAKALSETPGLDELAFDDGSRRAINTELKELQAARPDLWDAETSYYGGVIRRAVNPFHVIELIPLLKIGPFTGGLGYLIAIVVQRKFPRLFGLAYFGAVASIVLPGIYLILYT 248
            S + + T++ +S  + +K AG        + ++S   ++S L  ++ + K AT     LLG+  G       P +QAADLTPLP EF+TA++ MR+A  P++LRDAAKA+SE PGLDEL +DD SRRAINTELKEL+  RPDLWDAETSYYGGVIRRAVNPFHV+ELIPLLK+GPF GG+GY +AIVVQRKFPR F LAYFGA+AS+V P +YLILYT
Sbjct:   37 SLTHLSTKTVRSVSVAVKAAG--------SGSESSSPKSSPLGPVQ-NVKRATSKAALLLGTCIGSFDTSGAPPSQAADLTPLPPEFRTAIMAMRDAAEPLSLRDAAKAVSELPGLDELLYDDASRRAINTELKELRQERPDLWDAETSYYGGVIRRAVNPFHVLELIPLLKVGPFVGGVGYFLAIVVQRKFPRFFALAYFGAIASLVAPAVYLILYT 245
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BLAST of NO06G02640 vs. NCBI_GenBank
Match: CBJ28861.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 71.2 bits (173), Expect = 4.900e-9
Identity = 57/195 (29.23%), Postives = 93/195 (47.69%), Query Frame = 0 
Query:   55 ATSSTTTDSLPSRASFLDTIRLSRKVATGTTTFLLGSATGQLLNPALPAAQAADLTPLP--AEFKTAVINMREAVFPINLRDAAKALSETPGLDE--LAFDDGSRRAINTELKELQAARPDLWDAETSYYGGVIRRAVNPFHVIELIPLLKIGPFTGGLGYLIAIVVQRKFPRLFGLAYFGAVASIVLPGIYLIL 246
            AT++  + SLP+ A+           + G    L G       N  +  A   D +     A+    V+ +++A  P  L ++   +++    DE  +  +  +  +I   L + + A  + WD+ T    G+++R ++PF+V+ L P LKI PF GG  YL    VQ+KF   F  AYFGAVA  V P + +IL
Sbjct:   97 ATAAILSSSLPAGAA---------SGSRGVRHHLDGGRGSSPANVLMVLADEGDFSSADGRADVSQLVLELKKADRPDTLLNSMVKINDVVDWDEDGVLENPFAAESIVKGLIDKRRAGGEAWDSNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLAVFFVQQKFRGFFPYAYFGAVAVFVAPALIVIL 282
The following BLAST results are available for this feature:
BLAST of NO06G02640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM26291.15.600e-6159.17hypothetical protein Naga_100073g6 [Nannochloropsi... [more]
CBJ28861.14.900e-929.23conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000194NSK000194Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02640.1NO06G02640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597409gene_6585Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100073g6gene4248Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02640.1NO06G02640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02640 ID=NO06G02640|Name=NO06G02640|organism=Nannochloropsis oceanica|type=gene|length=1108bp
ACAGGCGTCCTCTTTCTTCACTCGCTAGCCTCCTGCATACCATCATGATG
AGACCCTCCTTCCCACTAGCCCTCTCCCTTGCCCTTTTCCTTGGCGGCCC
TGACCTCCCCCGTGCATTTGTCTTTTCGTCCTCCTCCTCACCAATCCACA
CGCAATCTAGCCAATCGTTTCAGCTGAGAATGAAGCTGGCCGGCGTAGAA
GACACGGCAACGTCCTCTACCACAACCGACAGCCTCCCGAGTCGAGCCTC
CTTTCTGGACACCATCCGCCTGAGCCGCAAAGTTGCCACTGGCACTACCA
CCTTTTTACTCGGCAGTGCTACCGGTCAGCTCCTGAATCCTGCCCTTCCT
GCTGCCCAAGCCGCGGACCTGACCCCGTTGCCTGCCGAGTTCAAGACAGC
CGTCATAAACATGCGCGAGGCCGTTTTCCCCATCAACCTCCGCGATGCTG
CAAAGGCTCTGTCTGAAACCCCTGGCTTGGATGAGCTGGCGTTTGATGAC
GGGAGTCGGCGGGCAATTAACACGGAATTGAAAGAGCTGCAGGCGGCAAG
ACCAGATTTGTGGGATGCCGAGACGAGCTATTACGGAGGGGTGATCCGGC
GGGCGGTCAACCCATTCCATGTGATCGAGCTGATTCCTTTGCTGAAGgta
cgtttttggttacgggcgcaaagctatgcaccgtgactttaattgtaatt
ctaacacttttccgaccaattctccttatttttttaatgtatagATCGGA
CCTTTTACTGGAGGCCTTGGCTACTTGATTGCCATCGTCGTGCAGCGCAA
GTTTCCTCGTTTGTTCGGCCTCGCTTACTTTGGAGCCGTGGCATCCATTG
TATTACCCGGTATCTACCTCATTTTGTACACTTAGAGAGCTTTGGGCGAA
TCCGGTGATGGAATAAAAGGAGAAAGGAATGCTTATAGTGGTGAGGACTC
GAGAAAGCGGGCTGAGAGAGATCAGCACAATTACCACTGAAATTCATCAC
GCAAAAGCAAAAAAGGACTTGAAATCTATGTATAAGGTCTTCATGTTTGC
TGTCTCTTTTAGTTTCTGGTTGTGGCGGTGGTGGTCGAAGCACTCCTTGC
AATGCCCA
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protein sequence of NO06G02640.1

>NO06G02640.1-protein ID=NO06G02640.1-protein|Name=NO06G02640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MMRPSFPLALSLALFLGGPDLPRAFVFSSSSSPIHTQSSQSFQLRMKLAG
VEDTATSSTTTDSLPSRASFLDTIRLSRKVATGTTTFLLGSATGQLLNPA
LPAAQAADLTPLPAEFKTAVINMREAVFPINLRDAAKALSETPGLDELAF
DDGSRRAINTELKELQAARPDLWDAETSYYGGVIRRAVNPFHVIELIPLL
KIGPFTGGLGYLIAIVVQRKFPRLFGLAYFGAVASIVLPGIYLILYT*
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Synonyms
Publications