NO06G02480, NO06G02480 (gene) Nannochloropsis oceanica

Overview
NameNO06G02480
Unique NameNO06G02480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length638
Alignment locationchr6:700157..700794 +

Link to JBrowse

Properties
Property NameValue
DescriptionProtein FAM136A
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:700157..700794 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008560DUF842_euk
Homology
BLAST of NO06G02480 vs. NCBI_GenBank
Match: CCA20141.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 90.1 bits (222), Expect = 6.000e-15
Identity = 46/131 (35.11%), Postives = 72/131 (54.96%), Query Frame = 0
Query:    5 QARLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQQCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGKPDPSQQTKLQGVYDKCVGKCIDSHLPLINAMESKL 136
            + ++  AV   M+++D  +IR   K+ Y   A C D  + +SQ IQ CV  C M +Q++  +I  EL  FQNRLQRC   C+D  R++         D   Q+++Q   D CVG+C+D  +  I A++ +L
Sbjct:  479 EQKINDAVHGMMEQMDVKFIRDFQKRGYLRSAQCFDDKTSSSQQIQSCVEQCQMPMQQLQNVIQQELHSFQNRLQRCAMDCQDRARESIPI--SENVDHKTQSRVQKEMDACVGQCVDKQIACIPALQKRL 607          
BLAST of NO06G02480 vs. NCBI_GenBank
Match: XP_021934515.1 (protein FAM136A-like [Zootermopsis nevadensis] >KDR11476.1 hypothetical protein L798_14543 [Zootermopsis nevadensis])

HSP 1 Score: 89.7 bits (221), Expect = 7.800e-15
Identity = 41/135 (30.37%), Postives = 78/135 (57.78%), Query Frame = 0
Query:    1 MSDPQARLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQQCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGKPDPSQQTKLQGVYDKCVGKCIDSHLPLINAMESKL 136
            + + + R++ A+T  ++++D+ ++R++    + C A C D +  + + + QCV  CS+ L +    + NE ++ QNRLQRC   C D++RD   KM G  P  ++ ++    ++KC  KC+D HL L+  +  K+
Sbjct:    2 VEEQRTRVEEAMTRMVNEVDKLHLRKMQADMHRCAANCCDNNDLSIERVHQCVENCSVSLNKAQKYVQNEFEHLQNRLQRCIMQCNDDIRD---KM-GPNPTDAEVSRYSQDFEKCAVKCVDGHLGLVPTVLKKM 132          
BLAST of NO06G02480 vs. NCBI_GenBank
Match: XP_012501920.1 (PREDICTED: protein FAM136A [Propithecus coquereli])

HSP 1 Score: 89.7 bits (221), Expect = 7.800e-15
Identity = 46/132 (34.85%), Postives = 74/132 (56.06%), Query Frame = 0
Query:    4 PQARLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQQCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGKPDPSQQTKLQGVYDKCVGKCIDSHLPLINAMESKL 136
            PQ R+Q AV + +  L+R  IR++    + C A+C + S  + Q + QC+  C   L +  AL+ NEL+ FQ+RL RC   C D+ +D+   +  G    S++ +++   D CV KC+D H+ LI  M  K+
Sbjct:   12 PQVRVQEAVDSMVKSLERENIRKMQGLMFRCSASCCEDSQASMQQVHQCIERCHAPLAQAQALVTNELEKFQDRLARCTMYCNDKAKDS---IDAG----SKELQVKRQLDSCVTKCVDDHMHLIPTMTKKM 136          
BLAST of NO06G02480 vs. NCBI_GenBank
Match: XP_017687424.1 (PREDICTED: protein FAM136A [Lepidothrix coronata])

HSP 1 Score: 89.7 bits (221), Expect = 7.800e-15
Identity = 46/131 (35.11%), Postives = 73/131 (55.73%), Query Frame = 0
Query:    5 QARLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQQCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGKPDPSQQTKLQGVYDKCVGKCIDSHLPLINAMESKL 136
            Q R+QAAV +++  L+R  IR +    + C A C +  S + Q++Q+C+  C   L +  A++  EL++FQ+RL RC   C D+ +DA    GG +P      K++G  D C+  C D HL L+  M  K+
Sbjct:    8 QGRVQAAVESAVQGLERERIRAMQGAMFRCSARCCEDGSASMQEVQRCIERCHAPLAQAQAIVTAELEHFQDRLSRCSLQCRDQAKDA-LDSGGSEP------KVRGQLDACLASCGDQHLRLVPLMARKM 131          
BLAST of NO06G02480 vs. NCBI_GenBank
Match: XP_021490230.1 (protein FAM136A [Meriones unguiculatus])

HSP 1 Score: 89.7 bits (221), Expect = 7.800e-15
Identity = 46/131 (35.11%), Postives = 72/131 (54.96%), Query Frame = 0
Query:    5 QARLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQQCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGKPDPSQQTKLQGVYDKCVGKCIDSHLPLINAMESKL 136
            Q R+Q AV A +  ++R  IR++    + C A C + S  T Q + QC+  C   L +  AL+ NEL+ FQ+RL RC   C D+ +D+   M  G    +++ +++   D CV KC+D H+ LI  M  K+
Sbjct:    6 QLRVQEAVDAMVKSVERENIRKMQGLMFRCSANCCEDSQATMQQVHQCIERCHAPLAQAQALVTNELERFQDRLARCTMHCNDKAKDS---MDAG----NKEVQVKRQLDSCVSKCVDDHMHLIPTMTKKM 129          
BLAST of NO06G02480 vs. NCBI_GenBank
Match: XP_004924976.1 (protein FAM136A [Bombyx mori])

HSP 1 Score: 89.4 bits (220), Expect = 1.000e-14
Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = 0
Query:    7 RLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQQCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGKPDPSQQT--KLQGVYDKCVGKCIDSHLPLINAM 132
            R++  +T  +++LDR+Y+R++    + C + C D +  + + +  C+  C+  L   N  + NE+ +FQNRLQRC   C D  RD   ++G   PDPSQ+T  K    ++KC  KC+D H+ LI  M
Sbjct:    8 RIEQEMTNLVNELDRSYLRKMQGDMHRCASKCCDDTQSSLERVHGCIENCTTPLNHANNYVQNEINHFQNRLQRCVMDCNDTARD---RLG---PDPSQETIDKCTIDFEKCAVKCVDKHMSLIPGM 128          
BLAST of NO06G02480 vs. NCBI_GenBank
Match: XP_020461616.1 (protein FAM136A [Monopterus albus] >XP_020461617.1 protein FAM136A [Monopterus albus])

HSP 1 Score: 89.4 bits (220), Expect = 1.000e-14
Identity = 43/131 (32.82%), Postives = 75/131 (57.25%), Query Frame = 0
Query:    5 QARLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQQCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGKPDPSQQTKLQGVYDKCVGKCIDSHLPLINAMESKL 136
            QAR+Q  V   +  L+R +IR++  + +SC A C  +SS +  ++ QC+  C   L +   L+ +EL+ FQ+RL RC   C D+ +D    +  G  +P+    ++ + D+CVG C+D H+ LI +M  ++
Sbjct:    6 QARMQTVVEEMVHSLERDHIRKMQGRMFSCSADCCARSSASMSEVHQCIDRCHTPLAKAQGLVTSELEKFQDRLTRCTMHCNDKAKDL---LDSGAKEPA----VRSLLDRCVGSCVDDHINLIPSMTRRI 129          
BLAST of NO06G02480 vs. NCBI_GenBank
Match: XP_005385672.1 (PREDICTED: protein FAM136A [Chinchilla lanigera])

HSP 1 Score: 89.0 bits (219), Expect = 1.300e-14
Identity = 45/131 (34.35%), Postives = 72/131 (54.96%), Query Frame = 0
Query:    5 QARLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQQCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGKPDPSQQTKLQGVYDKCVGKCIDSHLPLINAMESKL 136
            Q R+Q AV + +  ++R  IR++    + C A+C + S  + Q + QC+  C   L +  AL+ NEL+ FQ+RL RC   C D+ +D+   M  G  +P  + +L    D CV KC+D H+ LI  M  ++
Sbjct:    6 QLRVQEAVDSMVKSVERENIRKMQGLMFRCSASCCEDSQASMQQVHQCIERCHAPLAQAQALVTNELEKFQDRLARCTMHCNDKAKDS---MDAGNKEPQVKQQL----DSCVAKCVDEHMNLIPTMTKRM 129          
BLAST of NO06G02480 vs. NCBI_GenBank
Match: XP_012605642.1 (protein FAM136A isoform X2 [Microcebus murinus])

HSP 1 Score: 89.0 bits (219), Expect = 1.300e-14
Identity = 46/132 (34.85%), Postives = 73/132 (55.30%), Query Frame = 0
Query:    4 PQARLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQQCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGKPDPSQQTKLQGVYDKCVGKCIDSHLPLINAMESKL 136
            PQ R+Q AV   +  L+R  IR++    + C A+C + S  + Q + QC+  C   L +  AL+ NEL+ FQ+RL RC   C D+ +D+   +  G    S++ +++   D CV KC+D H+ LI  M  K+
Sbjct:   12 PQVRVQEAVDTMVKSLERENIRKMQGLMFRCSASCCEDSQASMQQVHQCIERCHAPLAQAQALVTNELEKFQDRLARCTMHCNDKAKDS---IDAG----SKELQVKRQLDGCVTKCVDDHMHLIPTMTKKM 136          
BLAST of NO06G02480 vs. NCBI_GenBank
Match: XP_003965622.1 (PREDICTED: protein FAM136A [Takifugu rubripes])

HSP 1 Score: 88.6 bits (218), Expect = 1.700e-14
Identity = 44/131 (33.59%), Postives = 73/131 (55.73%), Query Frame = 0
Query:    5 QARLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQQCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGKPDPSQQTKLQGVYDKCVGKCIDSHLPLINAMESKL 136
            QAR+Q  V   +  L+R +IR++  + +SC A C  +SS +   + QC+  C   L +   L+ +EL+ FQ+RL RC   C D+ +D       G  +P+    ++ + D+CVG C+D H+ LI +M  +L
Sbjct:    6 QARMQNVVEEMVQSLERDHIRKMQGRMFSCSADCCSRSSDSMSQVHQCIERCHTPLAQAQGLVTSELEKFQDRLTRCTMHCNDKAKDL---FDSGAKEPA----VRALMDRCVGSCVDDHINLIPSMTRRL 129          
The following BLAST results are available for this feature:
BLAST of NO06G02480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CCA20141.16.000e-1535.11conserved hypothetical protein [Albugo laibachii N... [more]
XP_021934515.17.800e-1530.37protein FAM136A-like [Zootermopsis nevadensis] >KD... [more]
XP_012501920.17.800e-1534.85PREDICTED: protein FAM136A [Propithecus coquereli][more]
XP_017687424.17.800e-1535.11PREDICTED: protein FAM136A [Lepidothrix coronata][more]
XP_021490230.17.800e-1535.11protein FAM136A [Meriones unguiculatus][more]
XP_004924976.11.000e-1435.43protein FAM136A [Bombyx mori][more]
XP_020461616.11.000e-1432.82protein FAM136A [Monopterus albus] >XP_020461617.1... [more]
XP_005385672.11.300e-1434.35PREDICTED: protein FAM136A [Chinchilla lanigera][more]
XP_012605642.11.300e-1434.85protein FAM136A isoform X2 [Microcebus murinus][more]
XP_003965622.11.700e-1433.59PREDICTED: protein FAM136A [Takifugu rubripes][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000212NSK000212Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02480.1NO06G02480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597361gene_6566Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100145g7gene4262Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02480.1NO06G02480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02480 ID=NO06G02480|Name=NO06G02480|organism=Nannochloropsis oceanica|type=gene|length=638bp
AAGCACAGGCGACCTCCCGTCCTTAATTCCAGGCCAACCATCCACTGCTC
TAGCGCCACACAGTTTCGTAGACTATGAGCGACCCCCAAGCCCGTCTGCA
AGCAGCCGTAACGGCATCAATGGACAAGTTGGACCGGGCCTATATCCGGC
AGCTCAGCAAGAAGGCTTATTCATGCATGGCGACGTGCCACGACCAAAGT
AGTTACACCTCCCAAGACATCCAGCAATGCGTCGGGGCATGTTCTATGGG
CCTGCAAGAAGTCAATGCCCTGATCGGGAACGAGCTCCAATACTTCCAAA
ACCGGTTGCAGCGCTGCCAGCAATCTTGCGAAGACGAGGTGCGGGACGCT
CAGGCCAAGATGGGGGGAGGAAAACCCGACCCGTCACAACAAACAAAGCT
CCAAGGAGTCTACGACAAGTGCGTGGGCAAGTGTATTGACTCTCATTTAC
CCCTGATAAATGCCATGGAGAGCAAATTGGCAGGGGAGTGCAAAAGGCGG
CTATAAATTATGCGGAGATCAGAAAGATTTTGAGGACTTTGTCCGGTGAG
GGGGTAAATTGAAAATCTTCTTGATGCGTACCTGCTCGTAAAAGCTACTT
AATGGGAGCAAAAGCAAAACAACGTCTACTTTCAACCA
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protein sequence of NO06G02480.1

>NO06G02480.1-protein ID=NO06G02480.1-protein|Name=NO06G02480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MSDPQARLQAAVTASMDKLDRAYIRQLSKKAYSCMATCHDQSSYTSQDIQ
QCVGACSMGLQEVNALIGNELQYFQNRLQRCQQSCEDEVRDAQAKMGGGK
PDPSQQTKLQGVYDKCVGKCIDSHLPLINAMESKLAGECKRRL*
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Synonyms
Publications