NO06G02470, NO06G02470 (gene) Nannochloropsis oceanica

Overview
NameNO06G02470
Unique NameNO06G02470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2090
Alignment locationchr6:697871..699960 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:697871..699960 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO06G02470 vs. NCBI_GenBank
Match: EWM26270.1 (hypothetical protein Naga_100145g6 [Nannochloropsis gaditana] >EWM26271.1 hypothetical protein Naga_100145g6 [Nannochloropsis gaditana])

HSP 1 Score: 285.4 bits (729), Expect = 1.300e-73
Identity = 136/159 (85.53%), Postives = 150/159 (94.34%), Query Frame = 0 
Query:   27 MQGKDFKIIRRNSLTAEVDGVWPNLEEEEDSYIPHKVMMKECMMLRRVLGTDKADSLPQACKMNATSQANKNFITRLSHLNETSDVAGRVDITECHKLHDSLRMVAGGMTFLPASCNAMLEKEEQTLKERFEEENAKVYARLKRRNSWVGKEDYPPSAT 186
            MQGKDFKI+RRNSLTAEVDGVWPNLEEEEDSY+PHKV MKECMMLRRVLG DKADSLP+ACK+NATSQAN+ F+TRLSH NE+SDVAG V+I ECHKL DSLRMVAGG+TFLPASCNAML KEE+TLK++FE ENAKVYARLKRRNSWVGKED+PP+AT
Sbjct:    1 MQGKDFKIMRRNSLTAEVDGVWPNLEEEEDSYVPHKVHMKECMMLRRVLGADKADSLPRACKLNATSQANQGFLTRLSHFNESSDVAGVVNIKECHKLQDSLRMVAGGVTFLPASCNAMLAKEEETLKDKFETENAKVYARLKRRNSWVGKEDFPPTAT 159
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BLAST of NO06G02470 vs. NCBI_GenBank
Match: CBJ30818.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 64.3 bits (155), Expect = 4.500e-7
Identity = 56/192 (29.17%), Postives = 93/192 (48.44%), Query Frame = 0 
Query:   32 FKIIRRNSLTAEVDGVWPNLEEEED---SYIPHKVMMKECMMLRRVLGTDKADSLPQAC-----------KMNATSQANK--------------NFITR--------LSHLN-----ETSDVAGRVDITECHKLHDSLRMVAGGMTFLPASCNAMLEKEEQTLKERFEEENAKVYARLKRRNSWVGKEDYPP 183
            FK IRR++L  EVDG + +LEE ED   +   ++V  +EC++L RVL +DK+ +LP AC           + +++SQ  K                + R        LS L         ++ G +   +C  L D L    GG   LP +C  +L+  ++   + +  +NA++Y RLK+R++ + +E Y P
Sbjct:    9 FKGIRRDTLHNEVDGCFDDLEEFEDRNETSPQYRVTHQECVLLNRVL-SDKS-TLPSACFVPPGAEAAARRASSSSQRPKEPRPLPEDGETAVVQLVRRITGAVQPVLSSLTTPLHARKKEMGGTITEEQCQALADYLSPSVGGGYLLPTACFGLLKPPDEEQAKMYVMQNAEMYVRLKKRHTGMAEEGYFP 198
The following BLAST results are available for this feature:
BLAST of NO06G02470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM26270.11.300e-7385.53hypothetical protein Naga_100145g6 [Nannochloropsi... [more]
CBJ30818.14.500e-729.17expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000213NSK000213Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02470.1NO06G02470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100145g6gene4263Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02470.1NO06G02470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02470 ID=NO06G02470|Name=NO06G02470|organism=Nannochloropsis oceanica|type=gene|length=2090bp
AAGGAACCCGTCTAGCTGTCCTGTTGTTAGTCTTAAGTTCATCTTTGGTC
ATTCTCTCGCGTAGTATTAGAATGTGTGTACTTTGTAAGCTCCTGCATAC
CTAGGACAAGGCGCAGAAGGCAGTCCCTTGCAGGTGACATGGCACAAAAA
GTCAACCTCCTCACCCCACGTGCCGCAACGACCTCAGGCTTGAAGGGAAA
CATTGTTCTGTCTCGAGCTTCAAGCAAGTTCCAAACTCAGCTGTACTTTT
AGAAATACCTCTATTGTTTTGCAGAAAGAGCTACAGACAATTGGACGCCA
CCGTAACAAAGCTCACGCTAAGCTCTTTGTGTAGCCGGGTGTAGGCAGGT
CCTGTCGTTTAGCCCGCGATGAGGCACTTTGACACCTCGGCAGATGGAAG
CAAACGTCAAACAGAAGGATCCTTGCTATATGCACATGACACCCTGCTAG
GCTCTATATCAGGCGCGGAAAAGACGTGTTCCACCAAGCTCGAGCCATGG
TCCTTGCATCCCTGCGTCTTGCTTCAGCATTTGGGCTTGCGCTTTCTCCG
ATCTGCTTGTTGCCTAAGCGCAGCAGCGAACAGAACATCACCTCAAACAT
CAACGAGCACCCCAATTTGATAATGAAGTACACATGCACTACAGCACCAT
CGTACTCAAGCCAGCCAACATTTTCCACCTGCACGCCCCCAGCATGAACG
CCTTCTCACACAACTCTTTCCACTTCCCTTCCGCCCCACAACCACCATGC
CTACAGCTAACTTCAAGCAGAACACGCCATCTGGCAGGGTATTGCGCAAG
CGCGAAGCAACAATGCAGAAGGCCATGCAAGGCAAGGACTTTAAAATAAT
TCGCAGGAATTCACTCACTGCGGAGGTCGATGGGGTCTGGCCAAACTTGG
AGGAGGAGGAGGACTCTTACATTCCCCACAAGGTCATGATGAAAGgtgcg
tactttgagagggaagactggaaaggacgagaggagcgacgtgtacatgt
ttgaggagaaatgcgacacatatgtgcatgtctgtattttgtgccggatt
aaactgctgcctcagaaccctcacattctatccccccttccctccctccc
actttaaaagAGTGCATGATGCTCCGCCGTGTTCTGGGCACCGATAAAGC
CGATAGCCTTCCTCAAGCCTGCAAAATGAATGCCACCTCCCAGGCGAACA
AGAATTTCATCACCCGCCTCTCCCACCTCAATGAAACCTCCGACGTGGCA
GGGAGGGTAGACATTACGGAATGTCACAAGCTCCATGATTCCTTGCGAAT
GGTCGCGGGCGGTATGACCTTCCTCCCGGCCTCTTGCAATGCCATGTTAG
AGAAGGAAGAACAGACGTTGAAGGAAAGATTTGAGGAGGAGAACGCGAAG
GTCTATGCGCGACTGAAGCGTCGCAACTCGTGGGTGGGGAAGGAGGATTA
TCCCCCCAGTGCCACTTGAGGCCTGAGAGAGGGGGAAGGGAAGAAGGAAG
AGACGGAGAAGGAAGTCAAGGGCAACACGTGGGAGAAACGAGCGTCTGTG
TGTGTTTCGACGGGGCTGTTTTGAGTGTGCATGAATGGGAGAGAGTGAAG
AGGGGGGAGGTGGCACCAAAGCAATGACGACCACCGCATTGATCACTGCT
ACTGGTCCATTCTGTCACTTCTTCACTTGCATTTCACCCCAATTCAGAGT
CCGTATCTCAAGAGTACATTTATACAGGCTTGGGAGAAGGATTACATGAA
ACGTACCGTGCATAAAAAAATAAAACAAGGACATAATAACACAGAGATGA
CCCAAAAACAAAACGACGTCTGTGGATTAGCAAGACAACAGGAATCGGAA
TGTGCAGGACGACCATAACAAGAAAGAGGAAACCAAGATAAAAAAAAGTC
AAAAACTCACGTCAAGAAGTGCATACAGCCTAATATAAACACGTGTTTTA
TGTGAGGGTCAATGACAAAAAGGAGCAGCGCGAAGCCAACGAGCAGAAAA
ACAACACGGACAGCAGCGCGGTACAGGGAAGAGAAAAAAAAGGGGGGGTG
AAACTAAAAGAAGGAAATCCACAAGGCGCGGGAAACTAAA
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protein sequence of NO06G02470.1

>NO06G02470.1-protein ID=NO06G02470.1-protein|Name=NO06G02470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MPTANFKQNTPSGRVLRKREATMQKAMQGKDFKIIRRNSLTAEVDGVWPN
LEEEEDSYIPHKVMMKECMMLRRVLGTDKADSLPQACKMNATSQANKNFI
TRLSHLNETSDVAGRVDITECHKLHDSLRMVAGGMTFLPASCNAMLEKEE
QTLKERFEEENAKVYARLKRRNSWVGKEDYPPSAT*
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Synonyms
Publications