NO06G02430, NO06G02430 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO06G02430 vs. NCBI_GenBank
Match: XP_012280126.1 (probable DNA-directed RNA polymerases I and III subunit RPAC2 [Orussus abietinus]) HSP 1 Score: 96.7 bits (239), Expect = 5.600e-17 Identity = 48/92 (52.17%), Postives = 64/92 (69.57%), Query Frame = 0 Query: 21 TDEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTLDSAIAGYEAREK 113 TDE SRTFVF DE HTLGN LR ++ + FCGY+VPHP+E KM+ R+Q S S+ AV+VL+ GL +L ++CD T DSA+ Y R++ Sbjct: 13 TDERSRTFVFQDEGHTLGNILRSIISQYPDVEFCGYTVPHPAESKMHFRIQ-SKSEKAVDVLRRGLQDLEKVCDHTMETFDSALNEYRKRKE 103
BLAST of NO06G02430 vs. NCBI_GenBank
Match: XP_002983787.2 (DNA-directed RNA polymerases I and III subunit RPAC2 [Selaginella moellendorffii]) HSP 1 Score: 96.7 bits (239), Expect = 5.600e-17 Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 0 Query: 22 DEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTLDSAIAGYEAREK 113 + HS TF F EDHTLGNSLR +L FCGYSVPHPSE K+NVR+QT T EV KD L ++V IC+ T+DSA+ ++A E+ Sbjct: 7 ESHSSTFCFNGEDHTLGNSLRFLLNKDPRVVFCGYSVPHPSENKVNVRVQT-TGAPGKEVFKDALLDMVAICEHVSTTMDSAVGRFKANEQ 96
BLAST of NO06G02430 vs. NCBI_GenBank
Match: XP_001453720.1 (hypothetical protein [Paramecium tetraurelia strain d4-2] >CAK86323.1 unnamed protein product [Paramecium tetraurelia]) HSP 1 Score: 96.3 bits (238), Expect = 7.300e-17 Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = 0 Query: 11 ADKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTLDSAI 105 A+K E E +D + TFVF DEDHTLGNSLR++L + FCGYS+PHPSE KMN+RLQT ++T +V+ DGL L +ICD+ + A+ Sbjct: 27 ANKGMEIQENSDPFNGTFVFFDEDHTLGNSLRYILANQPNVEFCGYSLPHPSENKMNMRLQT-VNETKEKVMNDGLKCLSQICDIIEDKFKQAL 119
BLAST of NO06G02430 vs. NCBI_GenBank
Match: NP_593118.2 (DNA-directed RNA polymerase I and III subunit Rpc19 [Schizosaccharomyces pombe] >Q09177.1 RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2; Short=RNA polymerases I and III subunit AC2; AltName: Full=AC19; AltName: Full=DNA-directed RNA polymerases I and III 14 kDa polypeptide >AAD45538.1 nuclear RNA polymerases I and III common subunit Rpc19 [Schizosaccharomyces pombe] >AAF24657.1 Rpc19 [Schizosaccharomyces pombe] >AAC49604.1 DNA-directed RNA polymerase I and III 16 kDa polypeptide [Schizosaccharomyces pombe] >BAA33719.1 RPA17 [Schizosaccharomyces pombe] >BAA36760.1 RPA17 [Schizosaccharomyces pombe] >CAB50921.2 DNA-directed RNA polymerase I and III subunit Rpc19 [Schizosaccharomyces pombe]) HSP 1 Score: 96.3 bits (238), Expect = 7.300e-17 Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 0 Query: 22 DEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICD 95 D S TF EDHTLGNSLR+V+M E FCGYS+PHPSE KMN R+QT+ S TAV+VL+ GL +L+++CD Sbjct: 31 DLTSVTFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLRKGLDDLIDLCD 103
BLAST of NO06G02430 vs. NCBI_GenBank
Match: KRX01394.1 (DNA-directed RNA polymerase, RBP11-like dimerization domain [Pseudocohnilembus persalinus]) HSP 1 Score: 96.3 bits (238), Expect = 7.300e-17 Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 0 Query: 22 DEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTLDSAIAGYEAREKD 114 D+ T++F DEDHTLGN+LR++L+ R + FCGYS+PHPSE KMN+RLQT K + VL++GL+ L CD+ D AI Y + K+ Sbjct: 50 DKTCGTYIFLDEDHTLGNALRYMLVKRPDVEFCGYSIPHPSENKMNIRLQT-VEKDSNSVLQEGLNSLANACDIIGDKFDQAIKKYNKKNKN 140
BLAST of NO06G02430 vs. NCBI_GenBank
Match: XP_004031057.1 (hypothetical protein IMG5_148050 [Ichthyophthirius multifiliis] >EGR29821.1 hypothetical protein IMG5_148050 [Ichthyophthirius multifiliis]) HSP 1 Score: 95.9 bits (237), Expect = 9.500e-17 Identity = 44/91 (48.35%), Postives = 66/91 (72.53%), Query Frame = 0 Query: 22 DEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTLDSAIAGYEAREK 113 D+ S T++F DEDHTLGN+LR+VL+ RK+ FCGY++PHPSE ++N+RLQTS SK + EVLK+ L L +CD+ + A+ ++ ++ Sbjct: 52 DKTSATYIFYDEDHTLGNALRYVLVKRKDVEFCGYTIPHPSENRLNLRLQTS-SKNSNEVLKESLDSLAGLCDVLNDKFVDALKKHKKNQR 141
BLAST of NO06G02430 vs. NCBI_GenBank
Match: XP_004338719.1 (RNA polymerase Rpb3/Rpb11 dimerization domain containing protein [Acanthamoeba castellanii str. Neff] >ELR16706.1 RNA polymerase Rpb3/Rpb11 dimerization domain containing protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 95.9 bits (237), Expect = 9.500e-17 Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 0 Query: 10 PADKKFESLEYT---DEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICD 95 P D+ F+ LE + ++ T +EDHTLGNSLR +LM E FCGYSVPHPSEPKMNVR+QT K +VE L+ GL++LV I + Sbjct: 11 PYDEDFKKLEISAGDSDNLITVTLSNEDHTLGNSLRWILMKNPEVDFCGYSVPHPSEPKMNVRIQTKDGKPSVEALRKGLNDLVSIAE 98
BLAST of NO06G02430 vs. NCBI_GenBank
Match: XP_018188207.1 (DNA-directed RNA polymerase I and III 14 KDA polypeptide [Xylona heveae TC161] >KZF22652.1 DNA-directed RNA polymerase I and III 14 KDA polypeptide [Xylona heveae TC161]) HSP 1 Score: 95.9 bits (237), Expect = 9.500e-17 Identity = 44/97 (45.36%), Postives = 65/97 (67.01%), Query Frame = 0 Query: 5 EHRPPP------ADKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDL 96 EH P P AD++ L + E + +F F EDHTLGN+LR+++M + FCGYS+PHPSE KMN+R+QT + TA + L+ GL +L+++CD+ Sbjct: 19 EHPPAPEPYIDLADQRIRVLPGSTETAASFEFEGEDHTLGNALRYIIMKNPDVEFCGYSIPHPSEAKMNIRIQTYENTTAFDALEKGLDDLMDLCDV 115
BLAST of NO06G02430 vs. NCBI_GenBank
Match: GAD91462.1 (hypothetical protein AN6558.2 [Byssochlamys spectabilis No. 5]) HSP 1 Score: 95.1 bits (235), Expect = 1.600e-16 Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 0 Query: 23 EHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEICDLFDFTLDSAIAGYEAREKD 114 E + +F F EDHTLGN+LR+V+M FCGY++PHPSE KMN+R+QT S TAVE L+ GL +L+++CD+ +A + A ++D Sbjct: 44 ETAASFQFEGEDHTLGNALRYVIMKNPSVEFCGYTIPHPSEAKMNIRIQTYDSTTAVEALEKGLDDLMDLCDVVTDKFTTARDEFNAAQQD 134
BLAST of NO06G02430 vs. NCBI_GenBank
Match: XP_008889923.1 (hypothetical protein PPTG_00297 [Phytophthora parasitica INRA-310] >ETI57297.1 hypothetical protein F443_00379 [Phytophthora parasitica P1569] >ETK97081.1 hypothetical protein L915_00333 [Phytophthora parasitica] >ETL50429.1 hypothetical protein L916_00336 [Phytophthora parasitica] >ETM03469.1 hypothetical protein L917_00316 [Phytophthora parasitica] >ETM56738.1 hypothetical protein L914_00336 [Phytophthora parasitica] >ETN23773.1 hypothetical protein PPTG_00297 [Phytophthora parasitica INRA-310] >ETO86039.1 hypothetical protein F444_00362 [Phytophthora parasitica P1976] >ETP27090.1 hypothetical protein F441_00360 [Phytophthora parasitica CJ01A1] >ETP55037.1 hypothetical protein F442_00357 [Phytophthora parasitica P10297] >KUF87179.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Phytophthora nicotianae] >KUF97898.1 hypothetical protein AM588_10007124 [Phytophthora nicotianae]) HSP 1 Score: 94.7 bits (234), Expect = 2.100e-16 Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 0 Query: 11 ADKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETTFCGYSVPHPSEPKMNVRLQTSTSKTAVEVLKDGLHELVEI 93 A KK + T ++S+T+VF +EDHTLGN+LR+VLM + FCGY++PHPSEPKM++RLQT A E L+ GL +L ++ Sbjct: 4 AAKKLDVFSTTSDYSKTYVFHEEDHTLGNALRYVLMRNPDVDFCGYTIPHPSEPKMHIRLQTRQGAPADEALRSGLTDLRKV 85 The following BLAST results are available for this feature:
BLAST of NO06G02430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G02430 ID=NO06G02430|Name=NO06G02430|organism=Nannochloropsis oceanica|type=gene|length=1155bpback to top protein sequence of NO06G02430.1 >NO06G02430.1-protein ID=NO06G02430.1-protein|Name=NO06G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=126bpback to top Synonyms
Publications
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