NO06G02420, NO06G02420 (gene) Nannochloropsis oceanica

Overview
NameNO06G02420
Unique NameNO06G02420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length405
Alignment locationchr6:686438..686842 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:686438..686842 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO06G02420 vs. NCBI_GenBank
Match: EWM26213.1 (hypothetical protein Naga_100025g68 [Nannochloropsis gaditana])

HSP 1 Score: 160.2 bits (404), Expect = 4.400e-36
Identity = 88/134 (65.67%), Postives = 103/134 (76.87%), Query Frame = 0
Query:    1 MPSLMTTLRDLQERHKRFVKKVHAFRIPLSPQGKAVAQVVYFSVPVVAGYFIMGWATDRAKAEIQYSDDYDEAKKTSGFGRARATGTGGDGVEAERVKKAMRVTPETASMEDQIARQNMGLQSYLDSIRHQKKR 135
            M SLM T+RD Q+RH+RFVK+VHAFRIPLSP  KAVAQVVYFS+P+VAGYFIMGWATDRAKAEIQYSD  +EA++T      R       G EA RV KAMRV     ++++QIARQN+GLQSYLDSIR   K+
Sbjct:   43 MSSLMATVRDWQDRHRRFVKRVHAFRIPLSPPAKAVAQVVYFSIPLVAGYFIMGWATDRAKAEIQYSDS-NEAEET------RIRRDASQGEEATRVFKAMRVDRGGGAIDEQIARQNLGLQSYLDSIRESGKK 169          
BLAST of NO06G02420 vs. NCBI_GenBank
Match: GAX98263.1 (Hypothetical protein PINS_006130 [Pythium insidiosum])

HSP 1 Score: 72.0 bits (175), Expect = 1.600e-9
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 0
Query:    4 LMTTLRDLQERHKRFVKKVHAFRIPLSPQGKAVAQVVYFSVPVVAGYFIMGWATDRAKAEIQYSDD 70
            +++ LRD+   H+R  K+VHAFRIPLS  G+    VVYFS+PV+ GYF+M WA  RA+      +D
Sbjct:    1 MLSFLRDIGAAHERLKKRVHAFRIPLSKNGQRAMGVVYFSIPVIGGYFVMKWAERRAERNFALEED 66          
BLAST of NO06G02420 vs. NCBI_GenBank
Match: XP_008867574.1 (hypothetical protein H310_04836 [Aphanomyces invadans] >ETW03345.1 hypothetical protein H310_04836 [Aphanomyces invadans])

HSP 1 Score: 70.9 bits (172), Expect = 3.500e-9
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 0
Query:    5 MTTLRDLQERHKRFVKKVHAFRIPLSPQGKAVAQVVYFSVPVVAGYFIMGWATDRAKAEIQYSDDYDEAKKTSGF 80
            M  +RD  + H+R  K++H+ RIPL P+GKAV  VVYF+ P++ GYF+M WA  ++KAE+   D     +  S F
Sbjct:    1 MGVVRDFLDAHERLKKRIHSTRIPLGPKGKAVMTVVYFTTPIICGYFVMQWA--QSKAEVNLKDLSIPTRNPSSF 73          
BLAST of NO06G02420 vs. NCBI_GenBank
Match: XP_009825352.1 (hypothetical protein H257_03100 [Aphanomyces astaci] >ETV85334.1 hypothetical protein H257_03100 [Aphanomyces astaci])

HSP 1 Score: 69.3 bits (168), Expect = 1.000e-8
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 0
Query:    5 MTTLRDLQERHKRFVKKVHAFRIPLSPQGKAVAQVVYFSVPVVAGYFIMGWATDRAKAEIQYSDDYDEAKKTSGF 80
            M   RD  + H+R  K++H+ RIPL P+GKAV   VYF+ P+V GYF+M WA  ++KAE+   D     +  S F
Sbjct:    1 MGVFRDFVDAHERLKKRIHSTRIPLGPKGKAVMTAVYFTTPIVCGYFVMQWA--QSKAEVNLKDVTLTTRNPSSF 73          
BLAST of NO06G02420 vs. NCBI_GenBank
Match: XP_012194487.1 (hypothetical protein SPRG_00884 [Saprolegnia parasitica CBS 223.65] >KDO34823.1 hypothetical protein SPRG_00884 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 68.2 bits (165), Expect = 2.300e-8
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 0
Query:    5 MTTLRDLQERHKRFVKKVHAFRIPLSPQGKAVAQVVYFSVPVVAGYFIMGWATDRAKAEIQ 66
            M  LRDL + H R  K++H  RIPLSP G  V +VVYF+ P++ GYF+M WA  R+ A ++
Sbjct:    1 MGWLRDLSDAHTRLKKRIHGTRIPLSPAGIRVMKVVYFTTPIIGGYFVMQWAQARSAANLR 61          
BLAST of NO06G02420 vs. NCBI_GenBank
Match: OQR86386.1 (calcyphosin [Achlya hypogyna])

HSP 1 Score: 67.8 bits (164), Expect = 3.000e-8
Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 0
Query:    5 MTTLRDLQERHKRFVKKVHAFRIPLSPQGKAVAQVVYFSVPVVAGYFIMGWATDRAKAEIQ 66
            M  LRDL + H R  KK+H  RIPLSP G  + +VVYF+ P++ GYF+M WA +R+ + ++
Sbjct:    1 MGWLRDLSDAHTRLKKKIHGTRIPLSPAGIRMMKVVYFTTPIIGGYFVMQWAQNRSVSNLR 61          
BLAST of NO06G02420 vs. NCBI_GenBank
Match: ETL92597.1 (hypothetical protein L917_09134 [Phytophthora parasitica])

HSP 1 Score: 66.2 bits (160), Expect = 8.700e-8
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 0
Query:    5 MTTLRDLQERHKRFVKKVHAFRIPLSPQGKAVAQVVYFSVPVVAGYFIMGWATDRAKAEIQYSDDYDEAKKTSG 79
            M  LR L ERH+   KK+H+ RIPLS  G+ V  +VYF+ P++ GY++M WA  RA A  Q  +   E ++ +G
Sbjct:    1 MEFLRRLGERHEALKKKIHSTRIPLSKSGQRVMGLVYFTTPIIGGYYVMKWAESRADANFQLEE--TEIRRAAG 72          
BLAST of NO06G02420 vs. NCBI_GenBank
Match: ETP43953.1 (hypothetical protein F442_09412 [Phytophthora parasitica P10297])

HSP 1 Score: 66.2 bits (160), Expect = 8.700e-8
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 0
Query:    5 MTTLRDLQERHKRFVKKVHAFRIPLSPQGKAVAQVVYFSVPVVAGYFIMGWATDRAKAEIQYSDDYDEAKKTSG 79
            M  LR L ERH+   KK+H+ RIPLS  G+ V  +VYF+ P++ GY++M WA +RA A  Q  +   E ++ +G
Sbjct:    1 MEFLRRLGERHEALKKKIHSTRIPLSKSGQRVMGLVYFTTPIIGGYYVMKWAENRADANFQREE--TEIRRAAG 72          
BLAST of NO06G02420 vs. NCBI_GenBank
Match: ETI46081.1 (hypothetical protein F443_09497 [Phytophthora parasitica P1569] >ETK86034.1 hypothetical protein L915_09305 [Phytophthora parasitica] >ETL39464.1 hypothetical protein L916_09210 [Phytophthora parasitica] >ETM45887.1 hypothetical protein L914_09166 [Phytophthora parasitica] >ETO74767.1 hypothetical protein F444_09567 [Phytophthora parasitica P1976] >ETP15902.1 hypothetical protein F441_09442 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 65.9 bits (159), Expect = 1.100e-7
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 0
Query:    5 MTTLRDLQERHKRFVKKVHAFRIPLSPQGKAVAQVVYFSVPVVAGYFIMGWATDRAKAEIQYSDDYDEAKKTSG 79
            M  LR L ERH+   KK+H+ RIPLS  G+ V  +VYF+ P++ GY++M WA  RA A  Q  +   E ++ +G
Sbjct:    1 MEFLRRLGERHEALKKKIHSTRIPLSKSGQRVMGLVYFTTPIIGGYYVMKWAESRADANFQREE--TEIRRAAG 72          
BLAST of NO06G02420 vs. NCBI_GenBank
Match: XP_008605159.1 (hypothetical protein SDRG_01413 [Saprolegnia diclina VS20] >EQC41445.1 hypothetical protein SDRG_01413 [Saprolegnia diclina VS20])

HSP 1 Score: 65.1 bits (157), Expect = 1.900e-7
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 0
Query:    5 MTTLRDLQERHKRFVKKVHAFRIPLSPQGKAVAQVVYFSVPVVAGYFIMGWATDRAKAEIQ 66
            M  LRDL + H R  K++H  RIPLSP G    +VVYF+ P++ GYF+M WA  R+ A ++
Sbjct:    1 MGWLRDLGDAHTRLKKRIHGTRIPLSPAGIRFMKVVYFTTPIIGGYFVMQWAQARSVANLR 61          
The following BLAST results are available for this feature:
BLAST of NO06G02420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 14
Match NameE-valueIdentityDescription
EWM26213.14.400e-3665.67hypothetical protein Naga_100025g68 [Nannochlorops... [more]
GAX98263.11.600e-948.48Hypothetical protein PINS_006130 [Pythium insidios... [more]
XP_008867574.13.500e-944.00hypothetical protein H310_04836 [Aphanomyces invad... [more]
XP_009825352.11.000e-844.00hypothetical protein H257_03100 [Aphanomyces astac... [more]
XP_012194487.12.300e-849.18hypothetical protein SPRG_00884 [Saprolegnia paras... [more]
OQR86386.13.000e-847.54calcyphosin [Achlya hypogyna][more]
ETL92597.18.700e-843.24hypothetical protein L917_09134 [Phytophthora para... [more]
ETP43953.18.700e-843.24hypothetical protein F442_09412 [Phytophthora para... [more]
ETI46081.11.100e-743.24hypothetical protein F443_09497 [Phytophthora para... [more]
XP_008605159.11.900e-747.54hypothetical protein SDRG_01413 [Saprolegnia dicli... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000220NSK000220Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02420.1NO06G02420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02420.1NO06G02420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02420 ID=NO06G02420|Name=NO06G02420|organism=Nannochloropsis oceanica|type=gene|length=405bp
ATGCCTTCCCTGATGACAACGTTGCGGGACTTGCAAGAGCGACATAAGCG
ATTCGTCAAAAAGGTGCACGCGTTCCGTATCCCGCTCTCTCCCCAAGGCA
AGGCTGTAGCGCAAGTGGTGTATTTCTCTGTGCCGGTCGTGGCCGGCTAC
TTTATCATGGGCTGGGCCACAGACCGCGCCAAGGCCGAGATTCAATACAG
CGACGACTACGATGAGGCCAAGAAAACCTCGGGTTTTGGTCGTGCCAGAG
CGACAGGTACTGGAGGAGATGGGGTAGAGGCTGAGCGTGTGAAAAAGGCC
ATGCGGGTGACCCCGGAGACGGCTTCGATGGAGGACCAAATTGCCAGACA
AAATATGGGTCTGCAGAGTTATTTGGATTCAATCCGGCATCAGAAGAAGA
GATGA
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protein sequence of NO06G02420.1

>NO06G02420.1-protein ID=NO06G02420.1-protein|Name=NO06G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MPSLMTTLRDLQERHKRFVKKVHAFRIPLSPQGKAVAQVVYFSVPVVAGY
FIMGWATDRAKAEIQYSDDYDEAKKTSGFGRARATGTGGDGVEAERVKKA
MRVTPETASMEDQIARQNMGLQSYLDSIRHQKKR*
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Synonyms
Publications