NO06G02420.1, NO06G02420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02420.1
Unique NameNO06G02420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length405
Alignment locationchr6:686438..686842 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:686438..686842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02420.1 vs.
Match: EWM26213.1 (hypothetical protein Naga_100025g68 [Nannochloropsis gaditana])

HSP 1 Score: 160.2 bits (404), Expect = 4.400e-36
Identity = 88/134 (65.67%), Postives = 103/134 (76.87%), Query Frame = 0 
Query:    1 MPSLMTTLRDLQERHKRFVKKVHAFRIPLSPQGKAVAQVVYFSVPVVAGYFIMGWATDRAKAEIQYSDDYDEAKKTSGFGRARATGTGGDGVEAERVKKAMRVTPETASMEDQIARQNMGLQSYLDSIRHQKKR 135
            M SLM T+RD Q+RH+RFVK+VHAFRIPLSP  KAVAQVVYFS+P+VAGYFIMGWATDRAKAEIQYSD  +EA++T      R       G EA RV KAMRV     ++++QIARQN+GLQSYLDSIR   K+
Sbjct:   43 MSSLMATVRDWQDRHRRFVKRVHAFRIPLSPPAKAVAQVVYFSIPLVAGYFIMGWATDRAKAEIQYSDS-NEAEET------RIRRDASQGEEATRVFKAMRVDRGGGAIDEQIARQNLGLQSYLDSIRESGKK 169
The following BLAST results are available for this feature:
BLAST of NO06G02420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26213.14.400e-3665.67hypothetical protein Naga_100025g68 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02420NO06G02420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02420.1NO06G02420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02420.1.cds1NO06G02420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02420.1 ID=NO06G02420.1|Name=NO06G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=405bp
ATGCCTTCCCTGATGACAACGTTGCGGGACTTGCAAGAGCGACATAAGCG
ATTCGTCAAAAAGGTGCACGCGTTCCGTATCCCGCTCTCTCCCCAAGGCA
AGGCTGTAGCGCAAGTGGTGTATTTCTCTGTGCCGGTCGTGGCCGGCTAC
TTTATCATGGGCTGGGCCACAGACCGCGCCAAGGCCGAGATTCAATACAG
CGACGACTACGATGAGGCCAAGAAAACCTCGGGTTTTGGTCGTGCCAGAG
CGACAGGTACTGGAGGAGATGGGGTAGAGGCTGAGCGTGTGAAAAAGGCC
ATGCGGGTGACCCCGGAGACGGCTTCGATGGAGGACCAAATTGCCAGACA
AAATATGGGTCTGCAGAGTTATTTGGATTCAATCCGGCATCAGAAGAAGA
GATGA
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protein sequence of NO06G02420.1

>NO06G02420.1-protein ID=NO06G02420.1-protein|Name=NO06G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MPSLMTTLRDLQERHKRFVKKVHAFRIPLSPQGKAVAQVVYFSVPVVAGY
FIMGWATDRAKAEIQYSDDYDEAKKTSGFGRARATGTGGDGVEAERVKKA
MRVTPETASMEDQIARQNMGLQSYLDSIRHQKKR*
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mRNA from alignment at chr6:686438..686842-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02420.1 ID=NO06G02420.1|Name=NO06G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=405bp|location=Sequence derived from alignment at chr6:686438..686842- (Nannochloropsis oceanica)
ATGCCTTCCCTGATGACAACGTTGCGGGACTTGCAAGAGCGACATAAGCG
ATTCGTCAAAAAGGTGCACGCGTTCCGTATCCCGCTCTCTCCCCAAGGCA
AGGCTGTAGCGCAAGTGGTGTATTTCTCTGTGCCGGTCGTGGCCGGCTAC
TTTATCATGGGCTGGGCCACAGACCGCGCCAAGGCCGAGATTCAATACAG
CGACGACTACGATGAGGCCAAGAAAACCTCGGGTTTTGGTCGTGCCAGAG
CGACAGGTACTGGAGGAGATGGGGTAGAGGCTGAGCGTGTGAAAAAGGCC
ATGCGGGTGACCCCGGAGACGGCTTCGATGGAGGACCAAATTGCCAGACA
AAATATGGGTCTGCAGAGTTATTTGGATTCAATCCGGCATCAGAAGAAGA
GATGA
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Coding sequence (CDS) from alignment at chr6:686438..686842-

>NO06G02420.1 ID=NO06G02420.1|Name=NO06G02420.1|organism=Nannochloropsis oceanica|type=CDS|length=405bp|location=Sequence derived from alignment at chr6:686438..686842- (Nannochloropsis oceanica)
ATGCCTTCCCTGATGACAACGTTGCGGGACTTGCAAGAGCGACATAAGCG
ATTCGTCAAAAAGGTGCACGCGTTCCGTATCCCGCTCTCTCCCCAAGGCA
AGGCTGTAGCGCAAGTGGTGTATTTCTCTGTGCCGGTCGTGGCCGGCTAC
TTTATCATGGGCTGGGCCACAGACCGCGCCAAGGCCGAGATTCAATACAG
CGACGACTACGATGAGGCCAAGAAAACCTCGGGTTTTGGTCGTGCCAGAG
CGACAGGTACTGGAGGAGATGGGGTAGAGGCTGAGCGTGTGAAAAAGGCC
ATGCGGGTGACCCCGGAGACGGCTTCGATGGAGGACCAAATTGCCAGACA
AAATATGGGTCTGCAGAGTTATTTGGATTCAATCCGGCATCAGAAGAAGA
GATGA
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Synonyms
Publications