NO06G02280, NO06G02280 (gene) Nannochloropsis oceanica

Overview
NameNO06G02280
Unique NameNO06G02280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length894
Alignment locationchr6:663860..664753 -

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Properties
Property NameValue
DescriptionPeptidyl-prolyl cis-trans isomerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:663860..664753 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003755peptidyl-prolyl cis-trans isomerase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0000413protein peptidyl-prolyl isomerization
Vocabulary: INTERPRO
TermDefinition
IPR029000Cyclophilin-like_dom
IPR024936Cyclophilin-type_PPIase
IPR002130Cyclophilin-type_PPIase_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO06G02280 vs. NCBI_GenBank
Match: EWM26220.1 (peptidyl-prolyl cis-trans isomerase cyclophilin type [Nannochloropsis gaditana])

HSP 1 Score: 364.0 bits (933), Expect = 4.400e-97
Identity = 183/293 (62.46%), Postives = 220/293 (75.09%), Query Frame = 0
Query:    7 LFFLLFRLLLNNFARAQEHGGITDINGTLVKCHTTAANGAAFILEIKREWAPLGAERFLQLVESGYFTNVPFFRVVPGFLTQFGIPPASDVRKRWRLAGAIQDDPTQNRSILRGYLSFAGGGPNTRDSQLFIALADSTWLGKSPWEVPLGRVIEGMDEVLDSLYSGYGEISPFNKEGIDQGKIWADDEYLRREFPKLDYFTDCMVIEASVKREKQEVNEGQDKEHDAQRKEATPTRIAKATASDVH--PDETPERSEGSLLGLWSVLCMVGGMVGFQVLMLVLKGGKSMEKGK 298
            LFF L      + + AQEH G+T+INGTLVKCHTTAANGAAFI EIK EWAP GAERFLQLV SGYFT+VPFFRVVPGFLTQFGIPP S VRKRWR  G+I DDP+QNR ILRGYLSFAG GPNTRD+QLFIALADS+WLGKSPWEVP+GRVIEGMD V+D+LY+GYGEISPFNKEG++Q KIWAD++YLRR+FPKLDY  DC +I AS K  K  + E + +  + +R      R+ + T + +    D+ P  +E      W +L ++GG+ GF  +M  L   KS+ K +
Sbjct:   11 LFFFL------SLSHAQEHRGVTEINGTLVKCHTTAANGAAFIFEIKSEWAPFGAERFLQLVASGYFTDVPFFRVVPGFLTQFGIPPPSAVRKRWREEGSIPDDPSQNRQILRGYLSFAGAGPNTRDTQLFIALADSSWLGKSPWEVPVGRVIEGMD-VIDALYAGYGEISPFNKEGVEQYKIWADEDYLRRDFPKLDYMKDCAIIPASAK--KASIQEDRGRREETKRVVVGEERVPEETLNALSNARDKEPAWTEEWPYTWWGLLWVLGGLFGFLTMMWKLNNVKSLGKAR 294          
BLAST of NO06G02280 vs. NCBI_GenBank
Match: CBJ29169.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 195.7 bits (496), Expect = 2.100e-46
Identity = 100/203 (49.26%), Postives = 130/203 (64.04%), Query Frame = 0
Query:   34 TLVKCHTTAANGAAFILEIKREWAPLGAERFLQLVESGYFTNVPFFRVVPGFLTQFGIPP--ASDVRKRWRLAGAIQDDPTQNRSILRGYLSFAGGGPNTRDSQLFIALADSTWLGKSPWEVPLGRVIEGMDEVLDSLYSGYGEISPFNKEGIDQGKIWA-DDEYLRREFPKLDYFTDCMVI-------EASVKREKQEVNEG 227
            T V+C TT A+  AF LE+   W+P GAERF+ LV+  YFT+V  FR V  FL QFGI P  +S  +K WR  G I+DDP    S  RG LSFAG GPN+R +Q+FI  AD   LGK+PWE PLG V +GMD V+D  Y+GYG+  PFN++GI+QG + +  + YLR EFP++ Y  +C V+        AS + EKQ+   G
Sbjct:   20 TRVQC-TTTASPEAFTLEVYHSWSPNGAERFVDLVKDDYFTDVALFRCVKNFLVQFGISPYVSSPKKKFWREKGPIKDDPNLQISFKRGMLSFAGSGPNSRGTQVFITFADIPHLGKTPWETPLGIVTQGMDTVVDKFYTGYGDQQPFNQDGINQGTLQSRGNAYLREEFPEISYLKECRVVGETVPEEHASARVEKQQEKPG 221          
BLAST of NO06G02280 vs. NCBI_GenBank
Match: GBG30862.1 (Peptidyl-prolyl cis-trans isomerase [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 154.8 bits (390), Expect = 4.100e-34
Identity = 78/166 (46.99%), Postives = 95/166 (57.23%), Query Frame = 0
Query:   48 FILEIKREWAPLGAERFLQLVESGYFTNVPFFRVVPGFLTQFGIPPASDVRKRWRLAGAIQDDPTQNRSILRGYLSFAGGGPNTRDSQLFIALADSTW--LGKSPWEVPLGRV-IEGMDEVLDSLYSGYGEISPFNKEGIDQGKIWADD-EYLRREFPKLDYFTDC 210
            F + +   WAP+GAERFL LV+ G+F   P FR V GFL QFG+    +   RW     + DDP Q   I RG L+FAG G N+R +Q+FIAL D  W  LG  PWE P   V  E    V+  L + YG+I PFNK+G+D GKIW     YL   FP LDY   C
Sbjct:   26 FKVVVVPSWAPVGAERFLNLVDEGFFDGAPLFRAVRGFLVQFGLSSDPEANNRWGHL-TLPDDPKQGVRIRRGTLAFAGSGKNSRATQMFIALTDKAWPRLGSEPWETPFAYVPAEDYQAVVSLLNTEYGDIKPFNKQGVDPGKIWRHGMSYLEDGFPNLDYLAYC 190          
BLAST of NO06G02280 vs. NCBI_GenBank
Match: OGS37827.1 (peptidylprolyl isomerase [Elusimicrobia bacterium RIFOXYA2_FULL_69_6])

HSP 1 Score: 153.3 bits (386), Expect = 1.200e-33
Identity = 81/166 (48.80%), Postives = 109/166 (65.66%), Query Frame = 0
Query:   48 FILEIKREWAPLGAERFLQLVESGYFTNVPFFRVVPGFLTQFGIPPASDVRKRWRLAGAIQDDPTQNRSILRGYLSFAGGGPNTRDSQLFIALADSTWLGKSPWEVPLGRVIEGMDEVLDSLYSGYGEISPFNKEGIDQGKIWAD-DEYLRREFPKLDYFTDCMVI 213
            F++EI R+WAP GA+RF +LV+SG+F +V FFR + GF+ QFGI     V  +WR A  I DDP   RS  RG L+FA  GP TR +QLFI   D+  L    +  P+G+V EGM  V+DSLY GYGE +P +  G DQG++ A+ + YL+R+FPKLDY     ++
Sbjct:   13 FVIEIHRDWAPRGADRFYELVKSGFFQDVAFFRAIDGFMVQFGIHGDPAVSAKWRGAN-IPDDPASGRSNSRGALTFATAGPGTRTTQLFINFGDNGNLDGMGF-TPIGQVAEGM-SVVDSLYKGYGEGAP-SGMGPDQGRVQAEGNAYLKRDFPKLDYIKSAQLV 174          
BLAST of NO06G02280 vs. NCBI_GenBank
Match: OGR53360.1 (peptidylprolyl isomerase [Elusimicrobia bacterium GWA2_62_23])

HSP 1 Score: 151.4 bits (381), Expect = 4.500e-33
Identity = 83/171 (48.54%), Postives = 115/171 (67.25%), Query Frame = 0
Query:   36 VKCHTTAANGAAFILEIKREWAPLGAERFLQLVESGYFTNVPFFRVVPGFLTQFGIPPASDVRKRWRLAGAIQDDPTQNRSILRGYLSFAGGGPNTRDSQLFIALADSTWLGKSPWEVPLGRVIEGMDEVLDSLYSGYGEISPFNKEGIDQGKI-WADDEYLRREFPKLDY 206
            VK  TT  +   F LEI R+W+PLGA+RF  LV++GYFT+V FFRV+ GF+ QFGI    +V   WR    IQDDP + +S  +GY+S+A  GPNTR +QLFI   ++  L    +  P G+V EGMD V++S+YSGYGE +P +  G DQG++    + YL+++FPK+DY
Sbjct:   20 VKFKTTKGD---FTLEITRDWSPLGADRFYNLVKAGYFTDVAFFRVIEGFMVQFGIHGDPEVSAAWR-GARIQDDPVK-QSNAKGYISYAMAGPNTRTTQLFINYGNNGRLDDMGFS-PFGKVTEGMD-VVESIYSGYGEGAP-SGMGPDQGRVQMQGNAYLKKDFPKMDY 182          
BLAST of NO06G02280 vs. NCBI_GenBank
Match: OGR64255.1 (peptidylprolyl isomerase [Elusimicrobia bacterium GWB2_63_22])

HSP 1 Score: 150.6 bits (379), Expect = 7.700e-33
Identity = 82/178 (46.07%), Postives = 113/178 (63.48%), Query Frame = 0
Query:   36 VKCHTTAANGAAFILEIKREWAPLGAERFLQLVESGYFTNVPFFRVVPGFLTQFGIPPASDVRKRWRLAGAIQDDPTQNRSILRGYLSFAGGGPNTRDSQLFIALADSTWLGKSPWEVPLGRVIEGMDEVLDSLYSGYGEISPFNKEGIDQGKI-WADDEYLRREFPKLDYFTDCMVI 213
            VK  TT     AF LE+ R W+PLGA+RF  LV++GYF ++ FFRV+ GF+ QFGI     V   WR    IQDDP + +S  +GY+SFA  GPNTR +Q+FI   D+  L    +  P G+V EGMD V++S+YSGYGE +P +  G DQG++    + YL+ EFP++DY     ++
Sbjct:   20 VKFDTTK---GAFTLEVTRAWSPLGADRFYNLVKNGYFADIAFFRVISGFMVQFGIHGDPAVASAWR-GARIQDDPVK-QSNTKGYISFAMAGPNTRTTQMFINFGDNERLDGMGFS-PFGKVTEGMD-VVESIYSGYGEGAP-SGMGPDQGRVQMQGNAYLKAEFPRMDYIKSAQLL 189          
BLAST of NO06G02280 vs. NCBI_GenBank
Match: OIO00514.1 (peptidylprolyl isomerase [Elusimicrobia bacterium CG1_02_56_21] >PJA17007.1 peptidylprolyl isomerase [Elusimicrobia bacterium CG_4_10_14_0_2_um_filter_56_8])

HSP 1 Score: 149.4 bits (376), Expect = 1.700e-32
Identity = 89/192 (46.35%), Postives = 118/192 (61.46%), Query Frame = 0
Query:   15 LLNNFARAQEHGGITDINGTLVKCHTTAANGAAFILEIKREWAPLGAERFLQLVESGYFTNVPFFRVVPGFLTQFGIPPASDVRKRWRLAGAIQDDPTQNRSILRGYLSFAGGGPNTRDSQLFIALADSTWLGKSPWEVPLGRVIEGMDEVLDSLYSGYGEISPFNKEGIDQGKIWA-DDEYLRREFPKLDY 206
            +LNN A+A E    T      VK +TT  +   F LEI R W+PLGA+RF  LV++G+FT++ FFRV+ GF+ QFGI     V   WR    IQDDP    S  +GY+SFA  GP TR +Q+FI   D+  L    +  P G+V EGM EV++S+YSGYGE +P  + G DQG   +  + YL+ EFPK+DY
Sbjct:    3 ILNNPAKATEKAPET----FKVKFNTTKGD---FTLEITRAWSPLGADRFYNLVKAGFFTDIAFFRVIEGFMVQFGIHGTPAVATAWR-GARIQDDPVV-ESNKKGYISFATAGPGTRTTQMFINFGDNARLDGMGFS-PFGKVSEGM-EVVESIYSGYGEGAPSGR-GPDQGMTQSKGNAYLKAEFPKMDY 182          
BLAST of NO06G02280 vs. NCBI_GenBank
Match: OGR39851.1 (peptidylprolyl isomerase [Elusimicrobia bacterium GWA2_64_40] >OGR64124.1 peptidylprolyl isomerase [Elusimicrobia bacterium GWB2_63_16])

HSP 1 Score: 149.1 bits (375), Expect = 2.200e-32
Identity = 80/178 (44.94%), Postives = 113/178 (63.48%), Query Frame = 0
Query:   36 VKCHTTAANGAAFILEIKREWAPLGAERFLQLVESGYFTNVPFFRVVPGFLTQFGIPPASDVRKRWRLAGAIQDDPTQNRSILRGYLSFAGGGPNTRDSQLFIALADSTWLGKSPWEVPLGRVIEGMDEVLDSLYSGYGEISPFNKEGIDQGKI-WADDEYLRREFPKLDYFTDCMVI 213
            VK  TT  +   F+LE+ R W+PLGA+RF  LV++G+F +V FFRV+ GF+ QFGI    +V   WR    IQDDP + +S  +GY+S+A  GPNTR +Q FI   D+  L    +  P G+V EGMD V++S+YSGYGE +P +  G DQG++    + YL+ +FP LDY     ++
Sbjct:   20 VKFATTKGD---FVLEVTRAWSPLGADRFYNLVKAGFFADVAFFRVIEGFMVQFGIHGDPEVASAWR-GARIQDDPVK-QSNAKGYISYAMAGPNTRTTQFFINYGDNARLDDMGFS-PFGKVTEGMD-VVESIYSGYGEGAP-SGNGPDQGRVQMKGNAYLKADFPNLDYIKSAQLL 189          
BLAST of NO06G02280 vs. NCBI_GenBank
Match: OLC77220.1 (peptidylprolyl isomerase [Gemmatimonadetes bacterium 13_1_40CM_4_69_8])

HSP 1 Score: 149.1 bits (375), Expect = 2.200e-32
Identity = 79/160 (49.38%), Postives = 105/160 (65.62%), Query Frame = 0
Query:   47 AFILEIKREWAPLGAERFLQLVESGYFTNVPFFRVVPGFLTQFGIPPASDVRKRWRLAGAIQDDPTQNRSILRGYLSFAGGGPNTRDSQLFIALADSTWLGKSPWEVPLGRVIEGMDEVLDSLYSGYGEISPFNKEGIDQGKIWAD-DEYLRREFPKLDY 206
            AF+++++R+WAPLGA+RF  LV+SGYF    FFRV+PGF+ QFGI     V   WR A  I DDP +  +  RG +SFA  GP TR +QLF+   D++ L    +  P GRV++GMD V+D LY GYGE +P  + G DQG + A  + YL R FP+LDY
Sbjct:   34 AFVIQVQRDWAPLGADRFYNLVKSGYFAGARFFRVIPGFMAQFGIHGDPPVAAAWREA-TIADDPVRQHN-TRGAVSFATAGPGTRTTQLFVNYGDNSQLDGMGF-APFGRVVDGMD-VVDRLYGGYGEGAPRGR-GPDQGLVQAQGNAYLERAFPQLDY 188          
BLAST of NO06G02280 vs. NCBI_GenBank
Match: OGS48617.1 (peptidylprolyl isomerase [Elusimicrobia bacterium RIFOXYB2_FULL_62_6])

HSP 1 Score: 148.7 bits (374), Expect = 2.900e-32
Identity = 79/166 (47.59%), Postives = 112/166 (67.47%), Query Frame = 0
Query:   48 FILEIKREWAPLGAERFLQLVESGYFTNVPFFRVVPGFLTQFGIPPASDVRKRWRLAGAIQDDPTQNRSILRGYLSFAGGGPNTRDSQLFIALADSTWLGKSPWEVPLGRVIEGMDEVLDSLYSGYGEISPFNKEGIDQGKIWAD-DEYLRREFPKLDYFTDCMVI 213
            F +E+ ++WAPLGA+RF  LV++GYFT++ FFRVV GF+ QFGI     V  +WR A  IQDDP + +S  +G L++A  GP+TR +QLFI   ++ +L    +  P G+V EGM  V+DSLYSGYGE +P    G DQG+I  + + YL+++FPK+DY     V+
Sbjct:   29 FTVEVYKDWAPLGADRFYNLVKAGYFTDIAFFRVVSGFMVQFGIHGDPAVSAKWREA-RIQDDPVK-QSNAKGNLTYAMAGPDTRTTQLFINFGNNAFLDSQGFP-PFGKVTEGM-SVVDSLYSGYGEGAP-RGMGPDQGRIQMEGNAYLKKDFPKMDYILSAEVL 189          
The following BLAST results are available for this feature:
BLAST of NO06G02280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26220.14.400e-9762.46peptidyl-prolyl cis-trans isomerase cyclophilin ty... [more]
CBJ29169.12.100e-4649.26conserved unknown protein [Ectocarpus siliculosus][more]
GBG30862.14.100e-3446.99Peptidyl-prolyl cis-trans isomerase [Aurantiochytr... [more]
OGS37827.11.200e-3348.80peptidylprolyl isomerase [Elusimicrobia bacterium ... [more]
OGR53360.14.500e-3348.54peptidylprolyl isomerase [Elusimicrobia bacterium ... [more]
OGR64255.17.700e-3346.07peptidylprolyl isomerase [Elusimicrobia bacterium ... [more]
OIO00514.11.700e-3246.35peptidylprolyl isomerase [Elusimicrobia bacterium ... [more]
OGR39851.12.200e-3244.94peptidylprolyl isomerase [Elusimicrobia bacterium ... [more]
OLC77220.12.200e-3249.38peptidylprolyl isomerase [Gemmatimonadetes bacteri... [more]
OGS48617.12.900e-3247.59peptidylprolyl isomerase [Elusimicrobia bacterium ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000231NSK000231Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02280.1NO06G02280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597304gene_6545Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100025g55gene4282Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02280.1NO06G02280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02280 ID=NO06G02280|Name=NO06G02280|organism=Nannochloropsis oceanica|type=gene|length=894bp
ATGCACGGCCTCCCCGCCCTGTTCTTCCTGCTCTTTCGCCTCCTCCTTAA
CAATTTTGCTCGAGCCCAAGAGCACGGGGGAATCACAGATATCAACGGCA
CGCTCGTTAAATGCCACACGACCGCCGCAAACGGGGCAGCCTTCATCCTC
GAAATAAAACGTGAGTGGGCTCCCCTCGGCGCGGAGCGATTCCTGCAGCT
AGTCGAGTCCGGATACTTCACAAATGTGCCCTTTTTCCGTGTGGTTCCTG
GATTCTTGACCCAGTTCGGCATCCCCCCCGCTTCGGATGTCCGAAAGCGC
TGGAGATTGGCAGGCGCAATTCAAGATGACCCCACCCAGAATCGTTCCAT
TTTACGAGGATACTTGAGCTTTGCCGGTGGCGGTCCCAACACCCGGGACA
GCCAGCTATTCATTGCCTTGGCAGACAGTACCTGGCTGGGCAAGTCGCCG
TGGGAAGTCCCGCTAGGTCGAGTGATTGAAGGGATGGATGAAGTGCTTGA
TTCGTTGTATTCGGGATATGGGGAAATTTCGCCTTTTAACAAGGAGGGGA
TAGACCAGGGGAAGATTTGGGCAGATGATGAGTATCTGAGGAGGGAGTTT
CCGAAGTTGGATTATTTTACGGATTGTATGGTAATTGAGGCGTCTGTCAA
AAGAGAGAAGCAGGAAGTGAATGAGGGGCAGGACAAGGAACATGACGCCC
AAAGAAAGGAGGCAACCCCTACGAGAATAGCAAAAGCGACGGCATCAGAT
GTACACCCAGATGAAACGCCGGAACGTTCCGAGGGATCGCTGTTGGGTTT
GTGGTCAGTGCTGTGCATGGTAGGGGGAATGGTGGGATTTCAGGTATTGA
TGTTGGTTCTGAAGGGCGGGAAAAGCATGGAGAAAGGCAAGTAA
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protein sequence of NO06G02280.1

>NO06G02280.1-protein ID=NO06G02280.1-protein|Name=NO06G02280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MHGLPALFFLLFRLLLNNFARAQEHGGITDINGTLVKCHTTAANGAAFIL
EIKREWAPLGAERFLQLVESGYFTNVPFFRVVPGFLTQFGIPPASDVRKR
WRLAGAIQDDPTQNRSILRGYLSFAGGGPNTRDSQLFIALADSTWLGKSP
WEVPLGRVIEGMDEVLDSLYSGYGEISPFNKEGIDQGKIWADDEYLRREF
PKLDYFTDCMVIEASVKREKQEVNEGQDKEHDAQRKEATPTRIAKATASD
VHPDETPERSEGSLLGLWSVLCMVGGMVGFQVLMLVLKGGKSMEKGK*
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Synonyms
Publications