NO06G02280.1, NO06G02280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02280.1
Unique NameNO06G02280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length894
Alignment locationchr6:663860..664753 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:663860..664753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02280.1 vs.
Match: EWM26220.1 (peptidyl-prolyl cis-trans isomerase cyclophilin type [Nannochloropsis gaditana])

HSP 1 Score: 364.0 bits (933), Expect = 4.400e-97
Identity = 183/293 (62.46%), Postives = 220/293 (75.09%), Query Frame = 0 
Query:    7 LFFLLFRLLLNNFARAQEHGGITDINGTLVKCHTTAANGAAFILEIKREWAPLGAERFLQLVESGYFTNVPFFRVVPGFLTQFGIPPASDVRKRWRLAGAIQDDPTQNRSILRGYLSFAGGGPNTRDSQLFIALADSTWLGKSPWEVPLGRVIEGMDEVLDSLYSGYGEISPFNKEGIDQGKIWADDEYLRREFPKLDYFTDCMVIEASVKREKQEVNEGQDKEHDAQRKEATPTRIAKATASDVH--PDETPERSEGSLLGLWSVLCMVGGMVGFQVLMLVLKGGKSMEKGK 298
            LFF L      + + AQEH G+T+INGTLVKCHTTAANGAAFI EIK EWAP GAERFLQLV SGYFT+VPFFRVVPGFLTQFGIPP S VRKRWR  G+I DDP+QNR ILRGYLSFAG GPNTRD+QLFIALADS+WLGKSPWEVP+GRVIEGMD V+D+LY+GYGEISPFNKEG++Q KIWAD++YLRR+FPKLDY  DC +I AS K  K  + E + +  + +R      R+ + T + +    D+ P  +E      W +L ++GG+ GF  +M  L   KS+ K +
Sbjct:   11 LFFFL------SLSHAQEHRGVTEINGTLVKCHTTAANGAAFIFEIKSEWAPFGAERFLQLVASGYFTDVPFFRVVPGFLTQFGIPPPSAVRKRWREEGSIPDDPSQNRQILRGYLSFAGAGPNTRDTQLFIALADSSWLGKSPWEVPVGRVIEGMD-VIDALYAGYGEISPFNKEGVEQYKIWADEDYLRRDFPKLDYMKDCAIIPASAK--KASIQEDRGRREETKRVVVGEERVPEETLNALSNARDKEPAWTEEWPYTWWGLLWVLGGLFGFLTMMWKLNNVKSLGKAR 294
The following BLAST results are available for this feature:
BLAST of NO06G02280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26220.14.400e-9762.46peptidyl-prolyl cis-trans isomerase cyclophilin ty... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02280NO06G02280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02280.1NO06G02280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02280.1.cds1NO06G02280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02280.1 ID=NO06G02280.1|Name=NO06G02280.1|organism=Nannochloropsis oceanica|type=mRNA|length=894bp
ATGCACGGCCTCCCCGCCCTGTTCTTCCTGCTCTTTCGCCTCCTCCTTAA
CAATTTTGCTCGAGCCCAAGAGCACGGGGGAATCACAGATATCAACGGCA
CGCTCGTTAAATGCCACACGACCGCCGCAAACGGGGCAGCCTTCATCCTC
GAAATAAAACGTGAGTGGGCTCCCCTCGGCGCGGAGCGATTCCTGCAGCT
AGTCGAGTCCGGATACTTCACAAATGTGCCCTTTTTCCGTGTGGTTCCTG
GATTCTTGACCCAGTTCGGCATCCCCCCCGCTTCGGATGTCCGAAAGCGC
TGGAGATTGGCAGGCGCAATTCAAGATGACCCCACCCAGAATCGTTCCAT
TTTACGAGGATACTTGAGCTTTGCCGGTGGCGGTCCCAACACCCGGGACA
GCCAGCTATTCATTGCCTTGGCAGACAGTACCTGGCTGGGCAAGTCGCCG
TGGGAAGTCCCGCTAGGTCGAGTGATTGAAGGGATGGATGAAGTGCTTGA
TTCGTTGTATTCGGGATATGGGGAAATTTCGCCTTTTAACAAGGAGGGGA
TAGACCAGGGGAAGATTTGGGCAGATGATGAGTATCTGAGGAGGGAGTTT
CCGAAGTTGGATTATTTTACGGATTGTATGGTAATTGAGGCGTCTGTCAA
AAGAGAGAAGCAGGAAGTGAATGAGGGGCAGGACAAGGAACATGACGCCC
AAAGAAAGGAGGCAACCCCTACGAGAATAGCAAAAGCGACGGCATCAGAT
GTACACCCAGATGAAACGCCGGAACGTTCCGAGGGATCGCTGTTGGGTTT
GTGGTCAGTGCTGTGCATGGTAGGGGGAATGGTGGGATTTCAGGTATTGA
TGTTGGTTCTGAAGGGCGGGAAAAGCATGGAGAAAGGCAAGTAA
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protein sequence of NO06G02280.1

>NO06G02280.1-protein ID=NO06G02280.1-protein|Name=NO06G02280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MHGLPALFFLLFRLLLNNFARAQEHGGITDINGTLVKCHTTAANGAAFIL
EIKREWAPLGAERFLQLVESGYFTNVPFFRVVPGFLTQFGIPPASDVRKR
WRLAGAIQDDPTQNRSILRGYLSFAGGGPNTRDSQLFIALADSTWLGKSP
WEVPLGRVIEGMDEVLDSLYSGYGEISPFNKEGIDQGKIWADDEYLRREF
PKLDYFTDCMVIEASVKREKQEVNEGQDKEHDAQRKEATPTRIAKATASD
VHPDETPERSEGSLLGLWSVLCMVGGMVGFQVLMLVLKGGKSMEKGK*
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mRNA from alignment at chr6:663860..664753-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02280.1 ID=NO06G02280.1|Name=NO06G02280.1|organism=Nannochloropsis oceanica|type=mRNA|length=894bp|location=Sequence derived from alignment at chr6:663860..664753- (Nannochloropsis oceanica)
ATGCACGGCCTCCCCGCCCTGTTCTTCCTGCTCTTTCGCCTCCTCCTTAA
CAATTTTGCTCGAGCCCAAGAGCACGGGGGAATCACAGATATCAACGGCA
CGCTCGTTAAATGCCACACGACCGCCGCAAACGGGGCAGCCTTCATCCTC
GAAATAAAACGTGAGTGGGCTCCCCTCGGCGCGGAGCGATTCCTGCAGCT
AGTCGAGTCCGGATACTTCACAAATGTGCCCTTTTTCCGTGTGGTTCCTG
GATTCTTGACCCAGTTCGGCATCCCCCCCGCTTCGGATGTCCGAAAGCGC
TGGAGATTGGCAGGCGCAATTCAAGATGACCCCACCCAGAATCGTTCCAT
TTTACGAGGATACTTGAGCTTTGCCGGTGGCGGTCCCAACACCCGGGACA
GCCAGCTATTCATTGCCTTGGCAGACAGTACCTGGCTGGGCAAGTCGCCG
TGGGAAGTCCCGCTAGGTCGAGTGATTGAAGGGATGGATGAAGTGCTTGA
TTCGTTGTATTCGGGATATGGGGAAATTTCGCCTTTTAACAAGGAGGGGA
TAGACCAGGGGAAGATTTGGGCAGATGATGAGTATCTGAGGAGGGAGTTT
CCGAAGTTGGATTATTTTACGGATTGTATGGTAATTGAGGCGTCTGTCAA
AAGAGAGAAGCAGGAAGTGAATGAGGGGCAGGACAAGGAACATGACGCCC
AAAGAAAGGAGGCAACCCCTACGAGAATAGCAAAAGCGACGGCATCAGAT
GTACACCCAGATGAAACGCCGGAACGTTCCGAGGGATCGCTGTTGGGTTT
GTGGTCAGTGCTGTGCATGGTAGGGGGAATGGTGGGATTTCAGGTATTGA
TGTTGGTTCTGAAGGGCGGGAAAAGCATGGAGAAAGGCAAGTAA
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Coding sequence (CDS) from alignment at chr6:663860..664753-

>NO06G02280.1 ID=NO06G02280.1|Name=NO06G02280.1|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at chr6:663860..664753- (Nannochloropsis oceanica)
ATGCACGGCCTCCCCGCCCTGTTCTTCCTGCTCTTTCGCCTCCTCCTTAA
CAATTTTGCTCGAGCCCAAGAGCACGGGGGAATCACAGATATCAACGGCA
CGCTCGTTAAATGCCACACGACCGCCGCAAACGGGGCAGCCTTCATCCTC
GAAATAAAACGTGAGTGGGCTCCCCTCGGCGCGGAGCGATTCCTGCAGCT
AGTCGAGTCCGGATACTTCACAAATGTGCCCTTTTTCCGTGTGGTTCCTG
GATTCTTGACCCAGTTCGGCATCCCCCCCGCTTCGGATGTCCGAAAGCGC
TGGAGATTGGCAGGCGCAATTCAAGATGACCCCACCCAGAATCGTTCCAT
TTTACGAGGATACTTGAGCTTTGCCGGTGGCGGTCCCAACACCCGGGACA
GCCAGCTATTCATTGCCTTGGCAGACAGTACCTGGCTGGGCAAGTCGCCG
TGGGAAGTCCCGCTAGGTCGAGTGATTGAAGGGATGGATGAAGTGCTTGA
TTCGTTGTATTCGGGATATGGGGAAATTTCGCCTTTTAACAAGGAGGGGA
TAGACCAGGGGAAGATTTGGGCAGATGATGAGTATCTGAGGAGGGAGTTT
CCGAAGTTGGATTATTTTACGGATTGTATGGTAATTGAGGCGTCTGTCAA
AAGAGAGAAGCAGGAAGTGAATGAGGGGCAGGACAAGGAACATGACGCCC
AAAGAAAGGAGGCAACCCCTACGAGAATAGCAAAAGCGACGGCATCAGAT
GTACACCCAGATGAAACGCCGGAACGTTCCGAGGGATCGCTGTTGGGTTT
GTGGTCAGTGCTGTGCATGGTAGGGGGAATGGTGGGATTTCAGGTATTGA
TGTTGGTTCTGAAGGGCGGGAAAAGCATGGAGAAAGGCAAGTAA
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Synonyms
Publications