NO06G02210, NO06G02210 (gene) Nannochloropsis oceanica

Overview
NameNO06G02210
Unique NameNO06G02210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2612
Alignment locationchr6:641876..644487 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:641876..644487 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO06G02210 vs. NCBI_GenBank
Match: XP_002296861.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED86845.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 91.3 bits (225), Expect = 1.200e-14
Identity = 86/341 (25.22%), Postives = 149/341 (43.70%), Query Frame = 0 
Query:  332 RMEMAAQFRDGQGFIFFQHLRKAGGTGFCDLATRNMPKQ-IPPYYCMP------DGRGTLATPPWSTSWLLE--TMDEKGWRIAANEWDPFVRSKFAIGD------------------AVFATTLRDPTDRWFSQYRFEHLEHRDGSSEDETPVPFREW----YDKMVTWNMGD-----------NYYVKTFLGEEDPMDKDALEKKGRNGVPLVHNDFYWGYHKYQERVFEWTDFNVAIDTVRRFHVVLVLEWLKDSD--KMIEEIFGWSQ--------APRQVLPHEVQAVRSDKKSKSARDSLGEELFEEIRKRNVIDHLFYAVTRRIFLERYACGEV 621
            R +M+    + +  ++++H+ K GGT FC LA  NM    +P Y+CMP      DGR       WS   ++E  T D + + I ANEWDPF R K  +                     +F TTLRDP DR  S Y F  +  +D   E      F +W      ++  + +G            N+ V  F G E      A  K+   G  +  + F        E++++   F  A+  + +  +VL ++ + + +    ++++ GW+Q        A  +   H V   + + K+ +AR+ LG+E +  + + N +D++ +  +R +F  R  C +V
Sbjct:  230 RQKMSEFNPEEEVILWYEHISKTGGTTFCGLAQSNMDTMLVPRYHCMPKKGELMDGR----VGSWSNEEMIEYLTTDHR-YNIVANEWDPFPRDKLVLSGRNLQGTTQSNSFLQGSPRLLFVTTLRDPADRLLSSYTFFGVTGKDDDPE------FGQWMKNNLGRVKNYKVGSKAAFRSNIARVNHSVWRFSGGELLHLAAAENKESEPGRAVRASQF--PPPVTDEKLWK-APFEDAVRALTQQDLVLPMDAMTEDEGKAAMQQLLGWTQFGIKGRRYAGDKESGHVV--TKGEVKNSNAREYLGDE-YRALWEANWLDYVLFYWSRAVFFARLHCNDV 553
[Close]
BLAST of NO06G02210 vs. NCBI_GenBank
Match: EJK65841.1 (hypothetical protein THAOC_13260 [Thalassiosira oceanica])

HSP 1 Score: 89.0 bits (219), Expect = 5.700e-14
Identity = 100/381 (26.25%), Postives = 157/381 (41.21%), Query Frame = 0 
Query:  283 LFSLAQTDPVSLLSKLDDPQNDPLDVKFASPENFTCPPPEQRLTQPDLRRMEMAAQFRDGQGFIFFQHLRKAGGTGFCDLATRNMPK-QIPPYYCMP------DGR-GTLATPPWSTSWLLETMDEKGWRIAANEWDPFVRSKFAI-------------GD---------AVFATTLRDPTDRWFSQYRFEHLEHRDGSSEDETPVPFREWYDKMVTWNMGDNYYVKTF-LGEEDPMDKDALEKKGRNGVPLVHNDFYWGYHKYQERVFEWTD-FNVAIDTVRRFHVVLVLEWL-KDSDKM-IEEIFGWSQ--APRQVLPHEVQAVRS--------DKKSKSARDSLGEELFEEIRKRNVIDHLFYAVTRRIFLERYACGE 620
            LFSL + +  +   K+D       DV F S E               L R +M       +  I+++H+ KAGGT FC +A+ NMP   +P Y+CMP      DGR GT     WS   +   + E+   I ANEW+PF   K  +             GD          +F TTLRDP DR  S Y F      D  +E++   P+ EW   M          +K +  G+     +  + +K  N +    +     Y   QE    W   F  A+  + +  ++L ++ + KD  K  +E + GW++  A  +   +E +  ++          K+ +AR     E F    + N +D+L +   R +FL R  C +
Sbjct:  182 LFSLKELEDGTCPWKIDTQVEWLPDVPFKSDEIAAEYRFRMDALGSGLTRRQMKELDDQRKVLIWYEHISKAGGTTFCGIASSNMPGWMVPSYHCMPKKGDLRDGRVGT-----WSNQEISTHVQEEKHGIVANEWEPFNLDKLKLSGRHFGGGSETSRGDEHENSNDPRLLFLTTLRDPQDRLLSAYTF----FADVGNENKKVGPYSEWIGNM-------RRRLKNYKAGKPQVGFRSNVARK--NHIVWRFSGGQLPYEDSQESA--WVPAFETAVRALSQQDLILPMDLMTKDEGKQALERLLGWTKFSAKGRFRSNEDKGDKAGGHVVTTGGVKNSNARTYFSPEDFRMQWEENWLDNLLFLWCRAVFLARLNCSK 542
The following BLAST results are available for this feature:
BLAST of NO06G02210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 12
Match NameE-valueIdentityDescription
XP_002296861.11.200e-1425.22predicted protein [Thalassiosira pseudonana CCMP13... [more]
EJK65841.15.700e-1426.25hypothetical protein THAOC_13260 [Thalassiosira oc... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL090nonsL090Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR146ngnoR146Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000248NSK000248Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02210.1NO06G02210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597280gene_6536Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100025g38gene4295Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02210.1NO06G02210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02210 ID=NO06G02210|Name=NO06G02210|organism=Nannochloropsis oceanica|type=gene|length=2612bp
TCCCTGCCGGGTCTACGAGTCTATTTCTTTTTGGTACACCGTGTTTCTAT
TCTCCTCTGACGCTTCTATCATACCACTCACCACGCCACGAATACAAGCA
TTTCATTTTTTTGGGGCCTTGTGTTTCATGTCCGGCACCGTACACGGTGC
ACAACCGGCCCTAGAAGAAGGGGGAGGTTGTTGGGTTGTTGGCATTCCAA
ATCAGGTCACCATGCACTCTGCGGCACATTTTCCCTTTTCTCCTCGATTT
ATCAGTGCCTTGCTGCTTAATGGCCCAGCCACTTGAGGGTCAGTTTCGGA
CGCACGTGGGTACTGGAATATAGCGCAGATCACTTCGTTTGCCTCGCCAA
GAACGTCGCCGTCTGTCATAACGGCTTATGTGCGCTCTGAAGAATGACCA
GGCAACAAGAGGGTGGTCTTTGTCTCGCTCTCTGGCTCTACTATTGAGCC
AATCCGGAAGGCCTCTGGTCCCCCGCTCTTTTCTCTCACTCTCAGCACGC
TGCTCCTTGTGATCCTGCTCGTGAGAACAAAAGGTTTTCACACGTCGTGC
GCGATTCAAATAAAGATGGGCCCTTCTTCATGATGGAGAGCTAAGTATAT
GCCGGCAACTACGTGAACCCACTCATATGCGCGCTATGCACACAAAAAAC
ATACAGGAAGGCGTCATGGTTGAGCCCTACCTGCACCGTCACTACGCTCC
GCCCTCGTCCGCCTCCTCGGCGGTCGCCCACACCCGCCGGCCCCGTTCTT
CTTCCTCCTTCTATGGCCGGGCCGCCGCCCGACTGCCTCACCTGCGCATG
GATGCGACTCTGTTCCTGCTCATTGTATGCTTCACAATGGGCGTCTACCT
TCCCGGCTTGGTCGGAATGTCCCCGCGGATTGATTCGGTCGGCGGTGGGA
GCGGTGCTCTTTTCAGCCGCAGCAGCAACAACAAAGGGGTGGACTTGCAC
GCTCTGCAAGCGCACGTTCAAAACCTGATGATGCGCATCACCGAGGCCGA
AGCCGAGACCGCTCTCATGTCTGAAGAGAATCAAAAGCTGCGCTTGGATA
ACAAGGTAGAACAGTCCTACCTTAAAACCATGACGAAGGCCAAGAACGAT
GAAATCCGCGTGCTCAAGGCCCGGATAAAAGAGGTAGAGGGCAAGATGTC
TGCTTGTGAGCAGCAACAAGATGAAGGTACCGACAAGGAAGAGCTACGCA
AGGCAGAACTGCGGACAGAATCGCTTGAAAAGGAACTGAAGGGTCTCCAC
ACGCAGCTGGAGCTTGCAATGAAGGAAAATTCGCATCAAGAGCCCGTGAT
GAAGGCAAGTGTCCCACCGCCGCGAGCAGTTCAAGAGGAGCAGCAGCAGG
AGCGGCAGCAGAGACGGCAAATGCAAAAATCCAATAGTATTAAACCCCTG
ATAACATACAGGACCGTCTCCGTCCCCGAGCCCCAACCACTAAATTCTTA
TTGGGAAACACGTCTACGGAAGCTCTTTTCCCTTGCCCAGACCGACCCCG
TATCCCTCCTCTCCAAGCTTGACGACCCCCAAAATGACCCCTTAGACGTC
AAATTTGCAAGCCCTGAAAATTTTACCTGTCCTCCTCCCGAACAACGCCT
CACGCAACCCGATCTAAGACGGATGGAGATGGCAGCTCAATTTCGTGATG
GGCAGGGGTTTATTTTTTTCCAGCATTTGCGAAAGGCGGGCGGGACGGGT
TTCTGCGATTTGGCCACCAGGAACATGCCTAAGCAGATTCCCCCGTATTA
TTGTATGCCCGACGGGCGTGGTACGCTTGCGACGCCTCCTTGGAGTACGT
CATGGTTGTTGGAGACAATGGATGAGAAGGGGTGGCGAATAGCGGCGAAT
GAGTGGGACCCTTTTGTGAGGTCGAAATTTGCGATTGGCGATGCGGTTTT
CGCGACGACTCTGCGTGACCCTACGGATCGGTGGTTCTCCCAATACAGGT
TTGAGCACTTGGAGCATCGTGATGGAAGCTCGGAGGATGAGACACCCGTG
CCGTTTCGCGAGTGGTACGATAAGATGGTGACATGGAATATGGGTGATAA
TTACTATGTGAAGACGTTTTTGGGAGAGGAAGATCCGATGGATAAAGATG
CGTTGGAGAAAAAAGGCCGGAATGGTGTCCCGCTTGTGCACAATGATTTC
TATTGGGGTTATCACAAATACCAGGAGCGGGTGTTTGAATGGACTGATTT
TAATGTGGCTATTGATACTGTGAGAAGGTTTCATGTGGTGTTGGTGCTTG
AGTGGTTGAAAGATTCTGATAAGATGATTGAGGAAATATTTGGGTGGTCT
CAGGCTCCGAGGCAGGTTTTGCCTCATGAGGTGCAGGCGGTACGGAGTGA
TAAGAAGAGTAAAAGTGCCAGAGACTCGCTCGGAGAGGAGTTGTTTGAGG
AGATAAGGAAAAGGAATGTGATAGATCATTTGTTTTACGCGGTGACGCGG
AGAATTTTCTTGGAACGATATGCGTGTGGGGAGGTTTAGCTAGAGGCAGA
GATACGGAAGGGGAGATTATTCATGAGGAGACGGATAATTGCGGAATTGG
AGGAGTGATCTCTGCTTGAGATTTACTACATGCATGTATAGGGAAAGGCC
CAAAAGAGCAAT
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protein sequence of NO06G02210.1

>NO06G02210.1-protein ID=NO06G02210.1-protein|Name=NO06G02210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=621bp
MRAMHTKNIQEGVMVEPYLHRHYAPPSSASSAVAHTRRPRSSSSFYGRAA
ARLPHLRMDATLFLLIVCFTMGVYLPGLVGMSPRIDSVGGGSGALFSRSS
NNKGVDLHALQAHVQNLMMRITEAEAETALMSEENQKLRLDNKVEQSYLK
TMTKAKNDEIRVLKARIKEVEGKMSACEQQQDEGTDKEELRKAELRTESL
EKELKGLHTQLELAMKENSHQEPVMKASVPPPRAVQEEQQQERQQRRQMQ
KSNSIKPLITYRTVSVPEPQPLNSYWETRLRKLFSLAQTDPVSLLSKLDD
PQNDPLDVKFASPENFTCPPPEQRLTQPDLRRMEMAAQFRDGQGFIFFQH
LRKAGGTGFCDLATRNMPKQIPPYYCMPDGRGTLATPPWSTSWLLETMDE
KGWRIAANEWDPFVRSKFAIGDAVFATTLRDPTDRWFSQYRFEHLEHRDG
SSEDETPVPFREWYDKMVTWNMGDNYYVKTFLGEEDPMDKDALEKKGRNG
VPLVHNDFYWGYHKYQERVFEWTDFNVAIDTVRRFHVVLVLEWLKDSDKM
IEEIFGWSQAPRQVLPHEVQAVRSDKKSKSARDSLGEELFEEIRKRNVID
HLFYAVTRRIFLERYACGEV*
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Synonyms
Publications