NO06G02210.1, NO06G02210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02210.1
Unique NameNO06G02210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2612
Alignment locationchr6:641876..644487 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:641876..644487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G02210.1 vs.
Match: EWM26233.1 (hypothetical protein Naga_100025g38 [Nannochloropsis gaditana])

HSP 1 Score: 668.7 bits (1724), Expect = 1.800e-188
Identity = 338/588 (57.48%), Postives = 430/588 (73.13%), Query Frame = 0
Query:   39 PRSSSSFYGRAAARLPHLRMDATLFLLIVCFTMGVYLPGLVGMSPRIDSVGGGSGALFSRSSNNKGVDLHALQAHVQNLMMRITEAEAETALMSEENQKLRLDNKVEQSYLKTMTKAKNDEIRVLKARIKEVEGKMSACEQQQDEGTDKEELRKAELRTESLEKELKGLHTQLELAMK----ENSHQ-EPVMKASVPPPRAVQEEQQQERQQRRQMQKSNSI----KPLITYRTVSVPEPQPLNSYWETRLRKLFSLAQTDPVSLLSKLDDPQNDPLDVKFASPENFTCPPPEQRLTQPDLRRMEMAAQFRDGQGFIFFQHLRKAGGTGFCDLATRNMPKQIPPYYCMPDGRGTLATPPWSTSWLLETMDEKGWRIAANEWDPFVRSKFAIGDAVFATTLRDPTDRWFSQYRFEHLEHRDGSSEDETPVPFREWYDKMVTWNMGDNYYVKTFLGEEDPMDKDALEKKGRNGVPLVHNDFYWGYHKYQERVFEWTDFNVAIDTVRRFHVVLVLEWLKDSDKMIEEIFGWSQAPRQVLPHEVQAVRSDKKSKSARDSLGEELFEEIRKRNVIDHLFYAVTRRIFLERYAC 618
            PR + S YGR +ARLPHLR+D TL LL+VCF MG+YLPG +GM+P  +S+G G+    SR   N  V    L   VQ L  R+T+AE + A + EENQKLRLDN++EQ+ LKT+TKAKN+EIR L+ARI   E K+ A ++Q  +G +KEEL K     + +E ++K L  QLELA +    +++HQ E     S+P               +++ +KS  +    KPL+T +TVSVPEPQPLN  WE RL  LF LAQ+DP SLLSKLDD   DPL V    P NFTCPPP +RLTQPDLRR+E+A QFR G GF+FFQHLRKAGGTGFCD+A+RNMP  +P YYCMPD RGTLATPPW+TSWLL+T++EK +RIAANEWDPF+R+ FAIGDAVFATT+RDPTDRW+SQYRFEH+EHRDG++++  P PF  WY +  + NMG NYYVKTFLGE    + + L++KG NGVPLVH +FYW Y+KYQ RV  W DF +A+DT+ RFHVVLV+EWL +++  ++   GW++APRQ+LPHEVQA R +KKSKSAR  L +++F+  R+ NV+DHLF+   RRIFLER+AC
Sbjct:   17 PRRNYSTYGRPSARLPHLRLDTTLVLLVVCFFMGMYLPGWMGMAPT-ESLGRGNDGSMSRE--NFAVSTPDLLERVQILKARMTDAEKKAAAVLEENQKLRLDNEIEQANLKTLTKAKNEEIRGLQARIDSTEEKLDATKKQNVDGNEKEELHKTRSEIKDMEDQIKSLKKQLELASQKSPSDSTHQHEKAAAGSIP-------------SSKKEPKKSEVVDVVKKPLLTRKTVSVPEPQPLNPLWEARLHALFDLAQSDPASLLSKLDDSNADPLGVNVGGPTNFTCPPPSERLTQPDLRRIEVATQFRGGHGFVFFQHLRKAGGTGFCDMASRNMPGHVPSYYCMPDHRGTLATPPWTTSWLLDTIEEKSFRIAANEWDPFLRAWFAIGDAVFATTIRDPTDRWYSQYRFEHVEHRDGTTQNSVPKPFDVWYGQEHSRNMGHNYYVKTFLGE--ATETEPLQRKGPNGVPLVHGNFYWAYNKYQARVLTWEDFRMAMDTLLRFHVVLVMEWLDEANATMKSTLGWTEAPRQILPHEVQAARQEKKSKSARALLDKKVFDSTREANVLDHLFFEAARRIFLERHAC 586          
The following BLAST results are available for this feature:
BLAST of NO06G02210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26233.11.800e-18857.48hypothetical protein Naga_100025g38 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02210NO06G02210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02210.1NO06G02210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02210.1.cds1NO06G02210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02210.1 ID=NO06G02210.1|Name=NO06G02210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2612bp
TCCCTGCCGGGTCTACGAGTCTATTTCTTTTTGGTACACCGTGTTTCTAT
TCTCCTCTGACGCTTCTATCATACCACTCACCACGCCACGAATACAAGCA
TTTCATTTTTTTGGGGCCTTGTGTTTCATGTCCGGCACCGTACACGGTGC
ACAACCGGCCCTAGAAGAAGGGGGAGGTTGTTGGGTTGTTGGCATTCCAA
ATCAGGTCACCATGCACTCTGCGGCACATTTTCCCTTTTCTCCTCGATTT
ATCAGTGCCTTGCTGCTTAATGGCCCAGCCACTTGAGGGTCAGTTTCGGA
CGCACGTGGGTACTGGAATATAGCGCAGATCACTTCGTTTGCCTCGCCAA
GAACGTCGCCGTCTGTCATAACGGCTTATGTGCGCTCTGAAGAATGACCA
GGCAACAAGAGGGTGGTCTTTGTCTCGCTCTCTGGCTCTACTATTGAGCC
AATCCGGAAGGCCTCTGGTCCCCCGCTCTTTTCTCTCACTCTCAGCACGC
TGCTCCTTGTGATCCTGCTCGTGAGAACAAAAGGTTTTCACACGTCGTGC
GCGATTCAAATAAAGATGGGCCCTTCTTCATGATGGAGAGCTAAGTATAT
GCCGGCAACTACGTGAACCCACTCATATGCGCGCTATGCACACAAAAAAC
ATACAGGAAGGCGTCATGGTTGAGCCCTACCTGCACCGTCACTACGCTCC
GCCCTCGTCCGCCTCCTCGGCGGTCGCCCACACCCGCCGGCCCCGTTCTT
CTTCCTCCTTCTATGGCCGGGCCGCCGCCCGACTGCCTCACCTGCGCATG
GATGCGACTCTGTTCCTGCTCATTGTATGCTTCACAATGGGCGTCTACCT
TCCCGGCTTGGTCGGAATGTCCCCGCGGATTGATTCGGTCGGCGGTGGGA
GCGGTGCTCTTTTCAGCCGCAGCAGCAACAACAAAGGGGTGGACTTGCAC
GCTCTGCAAGCGCACGTTCAAAACCTGATGATGCGCATCACCGAGGCCGA
AGCCGAGACCGCTCTCATGTCTGAAGAGAATCAAAAGCTGCGCTTGGATA
ACAAGGTAGAACAGTCCTACCTTAAAACCATGACGAAGGCCAAGAACGAT
GAAATCCGCGTGCTCAAGGCCCGGATAAAAGAGGTAGAGGGCAAGATGTC
TGCTTGTGAGCAGCAACAAGATGAAGGTACCGACAAGGAAGAGCTACGCA
AGGCAGAACTGCGGACAGAATCGCTTGAAAAGGAACTGAAGGGTCTCCAC
ACGCAGCTGGAGCTTGCAATGAAGGAAAATTCGCATCAAGAGCCCGTGAT
GAAGGCAAGTGTCCCACCGCCGCGAGCAGTTCAAGAGGAGCAGCAGCAGG
AGCGGCAGCAGAGACGGCAAATGCAAAAATCCAATAGTATTAAACCCCTG
ATAACATACAGGACCGTCTCCGTCCCCGAGCCCCAACCACTAAATTCTTA
TTGGGAAACACGTCTACGGAAGCTCTTTTCCCTTGCCCAGACCGACCCCG
TATCCCTCCTCTCCAAGCTTGACGACCCCCAAAATGACCCCTTAGACGTC
AAATTTGCAAGCCCTGAAAATTTTACCTGTCCTCCTCCCGAACAACGCCT
CACGCAACCCGATCTAAGACGGATGGAGATGGCAGCTCAATTTCGTGATG
GGCAGGGGTTTATTTTTTTCCAGCATTTGCGAAAGGCGGGCGGGACGGGT
TTCTGCGATTTGGCCACCAGGAACATGCCTAAGCAGATTCCCCCGTATTA
TTGTATGCCCGACGGGCGTGGTACGCTTGCGACGCCTCCTTGGAGTACGT
CATGGTTGTTGGAGACAATGGATGAGAAGGGGTGGCGAATAGCGGCGAAT
GAGTGGGACCCTTTTGTGAGGTCGAAATTTGCGATTGGCGATGCGGTTTT
CGCGACGACTCTGCGTGACCCTACGGATCGGTGGTTCTCCCAATACAGGT
TTGAGCACTTGGAGCATCGTGATGGAAGCTCGGAGGATGAGACACCCGTG
CCGTTTCGCGAGTGGTACGATAAGATGGTGACATGGAATATGGGTGATAA
TTACTATGTGAAGACGTTTTTGGGAGAGGAAGATCCGATGGATAAAGATG
CGTTGGAGAAAAAAGGCCGGAATGGTGTCCCGCTTGTGCACAATGATTTC
TATTGGGGTTATCACAAATACCAGGAGCGGGTGTTTGAATGGACTGATTT
TAATGTGGCTATTGATACTGTGAGAAGGTTTCATGTGGTGTTGGTGCTTG
AGTGGTTGAAAGATTCTGATAAGATGATTGAGGAAATATTTGGGTGGTCT
CAGGCTCCGAGGCAGGTTTTGCCTCATGAGGTGCAGGCGGTACGGAGTGA
TAAGAAGAGTAAAAGTGCCAGAGACTCGCTCGGAGAGGAGTTGTTTGAGG
AGATAAGGAAAAGGAATGTGATAGATCATTTGTTTTACGCGGTGACGCGG
AGAATTTTCTTGGAACGATATGCGTGTGGGGAGGTTTAGCTAGAGGCAGA
GATACGGAAGGGGAGATTATTCATGAGGAGACGGATAATTGCGGAATTGG
AGGAGTGATCTCTGCTTGAGATTTACTACATGCATGTATAGGGAAAGGCC
CAAAAGAGCAAT
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protein sequence of NO06G02210.1

>NO06G02210.1-protein ID=NO06G02210.1-protein|Name=NO06G02210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=621bp
MRAMHTKNIQEGVMVEPYLHRHYAPPSSASSAVAHTRRPRSSSSFYGRAA
ARLPHLRMDATLFLLIVCFTMGVYLPGLVGMSPRIDSVGGGSGALFSRSS
NNKGVDLHALQAHVQNLMMRITEAEAETALMSEENQKLRLDNKVEQSYLK
TMTKAKNDEIRVLKARIKEVEGKMSACEQQQDEGTDKEELRKAELRTESL
EKELKGLHTQLELAMKENSHQEPVMKASVPPPRAVQEEQQQERQQRRQMQ
KSNSIKPLITYRTVSVPEPQPLNSYWETRLRKLFSLAQTDPVSLLSKLDD
PQNDPLDVKFASPENFTCPPPEQRLTQPDLRRMEMAAQFRDGQGFIFFQH
LRKAGGTGFCDLATRNMPKQIPPYYCMPDGRGTLATPPWSTSWLLETMDE
KGWRIAANEWDPFVRSKFAIGDAVFATTLRDPTDRWFSQYRFEHLEHRDG
SSEDETPVPFREWYDKMVTWNMGDNYYVKTFLGEEDPMDKDALEKKGRNG
VPLVHNDFYWGYHKYQERVFEWTDFNVAIDTVRRFHVVLVLEWLKDSDKM
IEEIFGWSQAPRQVLPHEVQAVRSDKKSKSARDSLGEELFEEIRKRNVID
HLFYAVTRRIFLERYACGEV*
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mRNA from alignment at chr6:641876..644487+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02210.1 ID=NO06G02210.1|Name=NO06G02210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2612bp|location=Sequence derived from alignment at chr6:641876..644487+ (Nannochloropsis oceanica)
TCCCTGCCGGGTCTACGAGTCTATTTCTTTTTGGTACACCGTGTTTCTAT TCTCCTCTGACGCTTCTATCATACCACTCACCACGCCACGAATACAAGCA TTTCATTTTTTTGGGGCCTTGTGTTTCATGTCCGGCACCGTACACGGTGC ACAACCGGCCCTAGAAGAAGGGGGAGGTTGTTGGGTTGTTGGCATTCCAA ATCAGGTCACCATGCACTCTGCGGCACATTTTCCCTTTTCTCCTCGATTT ATCAGTGCCTTGCTGCTTAATGGCCCAGCCACTTGAGGGTCAGTTTCGGA CGCACGTGGGTACTGGAATATAGCGCAGATCACTTCGTTTGCCTCGCCAA GAACGTCGCCGTCTGTCATAACGGCTTATGTGCGCTCTGAAGAATGACCA GGCAACAAGAGGGTGGTCTTTGTCTCGCTCTCTGGCTCTACTATTGAGCC AATCCGGAAGGCCTCTGGTCCCCCGCTCTTTTCTCTCACTCTCAGCACGC TGCTCCTTGTGATCCTGCTCGTGAGAACAAAAGGTTTTCACACGTCGTGC GCGATTCAAATAAAGATGGGCCCTTCTTCATGATGGAGAGCTAAGTATAT GCCGGCAACTACGTGAACCCACTCATATGCGCGCTATGCACACAAAAAAC ATACAGGAAGGCGTCATGGTTGAGCCCTACCTGCACCGTCACTACGCTCC GCCCTCGTCCGCCTCCTCGGCGGTCGCCCACACCCGCCGGCCCCGTTCTT CTTCCTCCTTCTATGGCCGGGCCGCCGCCCGACTGCCTCACCTGCGCATG GATGCGACTCTGTTCCTGCTCATTGTATGCTTCACAATGGGCGTCTACCT TCCCGGCTTGGTCGGAATGTCCCCGCGGATTGATTCGGTCGGCGGTGGGA GCGGTGCTCTTTTCAGCCGCAGCAGCAACAACAAAGGGGTGGACTTGCAC GCTCTGCAAGCGCACGTTCAAAACCTGATGATGCGCATCACCGAGGCCGA AGCCGAGACCGCTCTCATGTCTGAAGAGAATCAAAAGCTGCGCTTGGATA ACAAGGTAGAACAGTCCTACCTTAAAACCATGACGAAGGCCAAGAACGAT GAAATCCGCGTGCTCAAGGCCCGGATAAAAGAGGTAGAGGGCAAGATGTC TGCTTGTGAGCAGCAACAAGATGAAGGTACCGACAAGGAAGAGCTACGCA AGGCAGAACTGCGGACAGAATCGCTTGAAAAGGAACTGAAGGGTCTCCAC ACGCAGCTGGAGCTTGCAATGAAGGAAAATTCGCATCAAGAGCCCGTGAT GAAGGCAAGTGTCCCACCGCCGCGAGCAGTTCAAGAGGAGCAGCAGCAGG AGCGGCAGCAGAGACGGCAAATGCAAAAATCCAATAGTATTAAACCCCTG ATAACATACAGGACCGTCTCCGTCCCCGAGCCCCAACCACTAAATTCTTA TTGGGAAACACGTCTACGGAAGCTCTTTTCCCTTGCCCAGACCGACCCCG TATCCCTCCTCTCCAAGCTTGACGACCCCCAAAATGACCCCTTAGACGTC AAATTTGCAAGCCCTGAAAATTTTACCTGTCCTCCTCCCGAACAACGCCT CACGCAACCCGATCTAAGACGGATGGAGATGGCAGCTCAATTTCGTGATG GGCAGGGGTTTATTTTTTTCCAGCATTTGCGAAAGGCGGGCGGGACGGGT TTCTGCGATTTGGCCACCAGGAACATGCCTAAGCAGATTCCCCCGTATTA TTGTATGCCCGACGGGCGTGGTACGCTTGCGACGCCTCCTTGGAGTACGT CATGGTTGTTGGAGACAATGGATGAGAAGGGGTGGCGAATAGCGGCGAAT GAGTGGGACCCTTTTGTGAGGTCGAAATTTGCGATTGGCGATGCGGTTTT CGCGACGACTCTGCGTGACCCTACGGATCGGTGGTTCTCCCAATACAGGT TTGAGCACTTGGAGCATCGTGATGGAAGCTCGGAGGATGAGACACCCGTG CCGTTTCGCGAGTGGTACGATAAGATGGTGACATGGAATATGGGTGATAA TTACTATGTGAAGACGTTTTTGGGAGAGGAAGATCCGATGGATAAAGATG CGTTGGAGAAAAAAGGCCGGAATGGTGTCCCGCTTGTGCACAATGATTTC TATTGGGGTTATCACAAATACCAGGAGCGGGTGTTTGAATGGACTGATTT TAATGTGGCTATTGATACTGTGAGAAGGTTTCATGTGGTGTTGGTGCTTG AGTGGTTGAAAGATTCTGATAAGATGATTGAGGAAATATTTGGGTGGTCT CAGGCTCCGAGGCAGGTTTTGCCTCATGAGGTGCAGGCGGTACGGAGTGA TAAGAAGAGTAAAAGTGCCAGAGACTCGCTCGGAGAGGAGTTGTTTGAGG AGATAAGGAAAAGGAATGTGATAGATCATTTGTTTTACGCGGTGACGCGG AGAATTTTCTTGGAACGATATGCGTGTGGGGAGGTTTAGCTAGAGGCAGA GATACGGAAGGGGAGATTATTCATGAGGAGACGGATAATTGCGGAATTGG AGGAGTGATCTCTGCTTGAGATTTACTACATGCATGTATAGGGAAAGGCC CAAAAGAGCAAT
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Coding sequence (CDS) from alignment at chr6:641876..644487+

>NO06G02210.1 ID=NO06G02210.1|Name=NO06G02210.1|organism=Nannochloropsis oceanica|type=CDS|length=1863bp|location=Sequence derived from alignment at chr6:641876..644487+ (Nannochloropsis oceanica)
ATGCGCGCTATGCACACAAAAAACATACAGGAAGGCGTCATGGTTGAGCC
CTACCTGCACCGTCACTACGCTCCGCCCTCGTCCGCCTCCTCGGCGGTCG
CCCACACCCGCCGGCCCCGTTCTTCTTCCTCCTTCTATGGCCGGGCCGCC
GCCCGACTGCCTCACCTGCGCATGGATGCGACTCTGTTCCTGCTCATTGT
ATGCTTCACAATGGGCGTCTACCTTCCCGGCTTGGTCGGAATGTCCCCGC
GGATTGATTCGGTCGGCGGTGGGAGCGGTGCTCTTTTCAGCCGCAGCAGC
AACAACAAAGGGGTGGACTTGCACGCTCTGCAAGCGCACGTTCAAAACCT
GATGATGCGCATCACCGAGGCCGAAGCCGAGACCGCTCTCATGTCTGAAG
AGAATCAAAAGCTGCGCTTGGATAACAAGGTAGAACAGTCCTACCTTAAA
ACCATGACGAAGGCCAAGAACGATGAAATCCGCGTGCTCAAGGCCCGGAT
AAAAGAGGTAGAGGGCAAGATGTCTGCTTGTGAGCAGCAACAAGATGAAG
GTACCGACAAGGAAGAGCTACGCAAGGCAGAACTGCGGACAGAATCGCTT
GAAAAGGAACTGAAGGGTCTCCACACGCAGCTGGAGCTTGCAATGAAGGA
AAATTCGCATCAAGAGCCCGTGATGAAGGCAAGTGTCCCACCGCCGCGAG
CAGTTCAAGAGGAGCAGCAGCAGGAGCGGCAGCAGAGACGGCAAATGCAA
AAATCCAATAGTATTAAACCCCTGATAACATACAGGACCGTCTCCGTCCC
CGAGCCCCAACCACTAAATTCTTATTGGGAAACACGTCTACGGAAGCTCT
TTTCCCTTGCCCAGACCGACCCCGTATCCCTCCTCTCCAAGCTTGACGAC
CCCCAAAATGACCCCTTAGACGTCAAATTTGCAAGCCCTGAAAATTTTAC
CTGTCCTCCTCCCGAACAACGCCTCACGCAACCCGATCTAAGACGGATGG
AGATGGCAGCTCAATTTCGTGATGGGCAGGGGTTTATTTTTTTCCAGCAT
TTGCGAAAGGCGGGCGGGACGGGTTTCTGCGATTTGGCCACCAGGAACAT
GCCTAAGCAGATTCCCCCGTATTATTGTATGCCCGACGGGCGTGGTACGC
TTGCGACGCCTCCTTGGAGTACGTCATGGTTGTTGGAGACAATGGATGAG
AAGGGGTGGCGAATAGCGGCGAATGAGTGGGACCCTTTTGTGAGGTCGAA
ATTTGCGATTGGCGATGCGGTTTTCGCGACGACTCTGCGTGACCCTACGG
ATCGGTGGTTCTCCCAATACAGGTTTGAGCACTTGGAGCATCGTGATGGA
AGCTCGGAGGATGAGACACCCGTGCCGTTTCGCGAGTGGTACGATAAGAT
GGTGACATGGAATATGGGTGATAATTACTATGTGAAGACGTTTTTGGGAG
AGGAAGATCCGATGGATAAAGATGCGTTGGAGAAAAAAGGCCGGAATGGT
GTCCCGCTTGTGCACAATGATTTCTATTGGGGTTATCACAAATACCAGGA
GCGGGTGTTTGAATGGACTGATTTTAATGTGGCTATTGATACTGTGAGAA
GGTTTCATGTGGTGTTGGTGCTTGAGTGGTTGAAAGATTCTGATAAGATG
ATTGAGGAAATATTTGGGTGGTCTCAGGCTCCGAGGCAGGTTTTGCCTCA
TGAGGTGCAGGCGGTACGGAGTGATAAGAAGAGTAAAAGTGCCAGAGACT
CGCTCGGAGAGGAGTTGTTTGAGGAGATAAGGAAAAGGAATGTGATAGAT
CATTTGTTTTACGCGGTGACGCGGAGAATTTTCTTGGAACGATATGCGTG
TGGGGAGGTTTAG
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Synonyms
Publications