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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:641876..644487 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G02210.1 vs.
Match: EWM26233.1 (hypothetical protein Naga_100025g38 [Nannochloropsis gaditana]) HSP 1 Score: 668.7 bits (1724), Expect = 1.800e-188 Identity = 338/588 (57.48%), Postives = 430/588 (73.13%), Query Frame = 0
Query: 39 PRSSSSFYGRAAARLPHLRMDATLFLLIVCFTMGVYLPGLVGMSPRIDSVGGGSGALFSRSSNNKGVDLHALQAHVQNLMMRITEAEAETALMSEENQKLRLDNKVEQSYLKTMTKAKNDEIRVLKARIKEVEGKMSACEQQQDEGTDKEELRKAELRTESLEKELKGLHTQLELAMK----ENSHQ-EPVMKASVPPPRAVQEEQQQERQQRRQMQKSNSI----KPLITYRTVSVPEPQPLNSYWETRLRKLFSLAQTDPVSLLSKLDDPQNDPLDVKFASPENFTCPPPEQRLTQPDLRRMEMAAQFRDGQGFIFFQHLRKAGGTGFCDLATRNMPKQIPPYYCMPDGRGTLATPPWSTSWLLETMDEKGWRIAANEWDPFVRSKFAIGDAVFATTLRDPTDRWFSQYRFEHLEHRDGSSEDETPVPFREWYDKMVTWNMGDNYYVKTFLGEEDPMDKDALEKKGRNGVPLVHNDFYWGYHKYQERVFEWTDFNVAIDTVRRFHVVLVLEWLKDSDKMIEEIFGWSQAPRQVLPHEVQAVRSDKKSKSARDSLGEELFEEIRKRNVIDHLFYAVTRRIFLERYAC 618
PR + S YGR +ARLPHLR+D TL LL+VCF MG+YLPG +GM+P +S+G G+ SR N V L VQ L R+T+AE + A + EENQKLRLDN++EQ+ LKT+TKAKN+EIR L+ARI E K+ A ++Q +G +KEEL K + +E ++K L QLELA + +++HQ E S+P +++ +KS + KPL+T +TVSVPEPQPLN WE RL LF LAQ+DP SLLSKLDD DPL V P NFTCPPP +RLTQPDLRR+E+A QFR G GF+FFQHLRKAGGTGFCD+A+RNMP +P YYCMPD RGTLATPPW+TSWLL+T++EK +RIAANEWDPF+R+ FAIGDAVFATT+RDPTDRW+SQYRFEH+EHRDG++++ P PF WY + + NMG NYYVKTFLGE + + L++KG NGVPLVH +FYW Y+KYQ RV W DF +A+DT+ RFHVVLV+EWL +++ ++ GW++APRQ+LPHEVQA R +KKSKSAR L +++F+ R+ NV+DHLF+ RRIFLER+AC
Sbjct: 17 PRRNYSTYGRPSARLPHLRLDTTLVLLVVCFFMGMYLPGWMGMAPT-ESLGRGNDGSMSRE--NFAVSTPDLLERVQILKARMTDAEKKAAAVLEENQKLRLDNEIEQANLKTLTKAKNEEIRGLQARIDSTEEKLDATKKQNVDGNEKEELHKTRSEIKDMEDQIKSLKKQLELASQKSPSDSTHQHEKAAAGSIP-------------SSKKEPKKSEVVDVVKKPLLTRKTVSVPEPQPLNPLWEARLHALFDLAQSDPASLLSKLDDSNADPLGVNVGGPTNFTCPPPSERLTQPDLRRIEVATQFRGGHGFVFFQHLRKAGGTGFCDMASRNMPGHVPSYYCMPDHRGTLATPPWTTSWLLDTIEEKSFRIAANEWDPFLRAWFAIGDAVFATTIRDPTDRWYSQYRFEHVEHRDGTTQNSVPKPFDVWYGQEHSRNMGHNYYVKTFLGE--ATETEPLQRKGPNGVPLVHGNFYWAYNKYQARVLTWEDFRMAMDTLLRFHVVLVMEWLDEANATMKSTLGWTEAPRQILPHEVQAARQEKKSKSARALLDKKVFDSTREANVLDHLFFEAARRIFLERHAC 586
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G02210.1 ID=NO06G02210.1|Name=NO06G02210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2612bp TCCCTGCCGGGTCTACGAGTCTATTTCTTTTTGGTACACCGTGTTTCTAT TCTCCTCTGACGCTTCTATCATACCACTCACCACGCCACGAATACAAGCA TTTCATTTTTTTGGGGCCTTGTGTTTCATGTCCGGCACCGTACACGGTGC ACAACCGGCCCTAGAAGAAGGGGGAGGTTGTTGGGTTGTTGGCATTCCAA ATCAGGTCACCATGCACTCTGCGGCACATTTTCCCTTTTCTCCTCGATTT ATCAGTGCCTTGCTGCTTAATGGCCCAGCCACTTGAGGGTCAGTTTCGGA CGCACGTGGGTACTGGAATATAGCGCAGATCACTTCGTTTGCCTCGCCAA GAACGTCGCCGTCTGTCATAACGGCTTATGTGCGCTCTGAAGAATGACCA GGCAACAAGAGGGTGGTCTTTGTCTCGCTCTCTGGCTCTACTATTGAGCC AATCCGGAAGGCCTCTGGTCCCCCGCTCTTTTCTCTCACTCTCAGCACGC TGCTCCTTGTGATCCTGCTCGTGAGAACAAAAGGTTTTCACACGTCGTGC GCGATTCAAATAAAGATGGGCCCTTCTTCATGATGGAGAGCTAAGTATAT GCCGGCAACTACGTGAACCCACTCATATGCGCGCTATGCACACAAAAAAC ATACAGGAAGGCGTCATGGTTGAGCCCTACCTGCACCGTCACTACGCTCC GCCCTCGTCCGCCTCCTCGGCGGTCGCCCACACCCGCCGGCCCCGTTCTT CTTCCTCCTTCTATGGCCGGGCCGCCGCCCGACTGCCTCACCTGCGCATG GATGCGACTCTGTTCCTGCTCATTGTATGCTTCACAATGGGCGTCTACCT TCCCGGCTTGGTCGGAATGTCCCCGCGGATTGATTCGGTCGGCGGTGGGA GCGGTGCTCTTTTCAGCCGCAGCAGCAACAACAAAGGGGTGGACTTGCAC GCTCTGCAAGCGCACGTTCAAAACCTGATGATGCGCATCACCGAGGCCGA AGCCGAGACCGCTCTCATGTCTGAAGAGAATCAAAAGCTGCGCTTGGATA ACAAGGTAGAACAGTCCTACCTTAAAACCATGACGAAGGCCAAGAACGAT GAAATCCGCGTGCTCAAGGCCCGGATAAAAGAGGTAGAGGGCAAGATGTC TGCTTGTGAGCAGCAACAAGATGAAGGTACCGACAAGGAAGAGCTACGCA AGGCAGAACTGCGGACAGAATCGCTTGAAAAGGAACTGAAGGGTCTCCAC ACGCAGCTGGAGCTTGCAATGAAGGAAAATTCGCATCAAGAGCCCGTGAT GAAGGCAAGTGTCCCACCGCCGCGAGCAGTTCAAGAGGAGCAGCAGCAGG AGCGGCAGCAGAGACGGCAAATGCAAAAATCCAATAGTATTAAACCCCTG ATAACATACAGGACCGTCTCCGTCCCCGAGCCCCAACCACTAAATTCTTA TTGGGAAACACGTCTACGGAAGCTCTTTTCCCTTGCCCAGACCGACCCCG TATCCCTCCTCTCCAAGCTTGACGACCCCCAAAATGACCCCTTAGACGTC AAATTTGCAAGCCCTGAAAATTTTACCTGTCCTCCTCCCGAACAACGCCT CACGCAACCCGATCTAAGACGGATGGAGATGGCAGCTCAATTTCGTGATG GGCAGGGGTTTATTTTTTTCCAGCATTTGCGAAAGGCGGGCGGGACGGGT TTCTGCGATTTGGCCACCAGGAACATGCCTAAGCAGATTCCCCCGTATTA TTGTATGCCCGACGGGCGTGGTACGCTTGCGACGCCTCCTTGGAGTACGT CATGGTTGTTGGAGACAATGGATGAGAAGGGGTGGCGAATAGCGGCGAAT GAGTGGGACCCTTTTGTGAGGTCGAAATTTGCGATTGGCGATGCGGTTTT CGCGACGACTCTGCGTGACCCTACGGATCGGTGGTTCTCCCAATACAGGT TTGAGCACTTGGAGCATCGTGATGGAAGCTCGGAGGATGAGACACCCGTG CCGTTTCGCGAGTGGTACGATAAGATGGTGACATGGAATATGGGTGATAA TTACTATGTGAAGACGTTTTTGGGAGAGGAAGATCCGATGGATAAAGATG CGTTGGAGAAAAAAGGCCGGAATGGTGTCCCGCTTGTGCACAATGATTTC TATTGGGGTTATCACAAATACCAGGAGCGGGTGTTTGAATGGACTGATTT TAATGTGGCTATTGATACTGTGAGAAGGTTTCATGTGGTGTTGGTGCTTG AGTGGTTGAAAGATTCTGATAAGATGATTGAGGAAATATTTGGGTGGTCT CAGGCTCCGAGGCAGGTTTTGCCTCATGAGGTGCAGGCGGTACGGAGTGA TAAGAAGAGTAAAAGTGCCAGAGACTCGCTCGGAGAGGAGTTGTTTGAGG AGATAAGGAAAAGGAATGTGATAGATCATTTGTTTTACGCGGTGACGCGG AGAATTTTCTTGGAACGATATGCGTGTGGGGAGGTTTAGCTAGAGGCAGA GATACGGAAGGGGAGATTATTCATGAGGAGACGGATAATTGCGGAATTGG AGGAGTGATCTCTGCTTGAGATTTACTACATGCATGTATAGGGAAAGGCC CAAAAGAGCAAT back to topprotein sequence of NO06G02210.1 >NO06G02210.1-protein ID=NO06G02210.1-protein|Name=NO06G02210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=621bp MRAMHTKNIQEGVMVEPYLHRHYAPPSSASSAVAHTRRPRSSSSFYGRAA ARLPHLRMDATLFLLIVCFTMGVYLPGLVGMSPRIDSVGGGSGALFSRSS NNKGVDLHALQAHVQNLMMRITEAEAETALMSEENQKLRLDNKVEQSYLK TMTKAKNDEIRVLKARIKEVEGKMSACEQQQDEGTDKEELRKAELRTESL EKELKGLHTQLELAMKENSHQEPVMKASVPPPRAVQEEQQQERQQRRQMQ KSNSIKPLITYRTVSVPEPQPLNSYWETRLRKLFSLAQTDPVSLLSKLDD PQNDPLDVKFASPENFTCPPPEQRLTQPDLRRMEMAAQFRDGQGFIFFQH LRKAGGTGFCDLATRNMPKQIPPYYCMPDGRGTLATPPWSTSWLLETMDE KGWRIAANEWDPFVRSKFAIGDAVFATTLRDPTDRWFSQYRFEHLEHRDG SSEDETPVPFREWYDKMVTWNMGDNYYVKTFLGEEDPMDKDALEKKGRNG VPLVHNDFYWGYHKYQERVFEWTDFNVAIDTVRRFHVVLVLEWLKDSDKM IEEIFGWSQAPRQVLPHEVQAVRSDKKSKSARDSLGEELFEEIRKRNVID HLFYAVTRRIFLERYACGEV* back to topmRNA from alignment at chr6:641876..644487+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G02210.1 ID=NO06G02210.1|Name=NO06G02210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2612bp|location=Sequence derived from alignment at chr6:641876..644487+ (Nannochloropsis oceanica) TCCCTGCCGGGTCTACGAGTCTATTTCTTTTTGGTACACCGTGTTTCTAT
TCTCCTCTGACGCTTCTATCATACCACTCACCACGCCACGAATACAAGCA
TTTCATTTTTTTGGGGCCTTGTGTTTCATGTCCGGCACCGTACACGGTGC
ACAACCGGCCCTAGAAGAAGGGGGAGGTTGTTGGGTTGTTGGCATTCCAA
ATCAGGTCACCATGCACTCTGCGGCACATTTTCCCTTTTCTCCTCGATTT
ATCAGTGCCTTGCTGCTTAATGGCCCAGCCACTTGAGGGTCAGTTTCGGA
CGCACGTGGGTACTGGAATATAGCGCAGATCACTTCGTTTGCCTCGCCAA
GAACGTCGCCGTCTGTCATAACGGCTTATGTGCGCTCTGAAGAATGACCA
GGCAACAAGAGGGTGGTCTTTGTCTCGCTCTCTGGCTCTACTATTGAGCC
AATCCGGAAGGCCTCTGGTCCCCCGCTCTTTTCTCTCACTCTCAGCACGC
TGCTCCTTGTGATCCTGCTCGTGAGAACAAAAGGTTTTCACACGTCGTGC
GCGATTCAAATAAAGATGGGCCCTTCTTCATGATGGAGAGCTAAGTATAT
GCCGGCAACTACGTGAACCCACTCATATGCGCGCTATGCACACAAAAAAC
ATACAGGAAGGCGTCATGGTTGAGCCCTACCTGCACCGTCACTACGCTCC
GCCCTCGTCCGCCTCCTCGGCGGTCGCCCACACCCGCCGGCCCCGTTCTT
CTTCCTCCTTCTATGGCCGGGCCGCCGCCCGACTGCCTCACCTGCGCATG
GATGCGACTCTGTTCCTGCTCATTGTATGCTTCACAATGGGCGTCTACCT
TCCCGGCTTGGTCGGAATGTCCCCGCGGATTGATTCGGTCGGCGGTGGGA
GCGGTGCTCTTTTCAGCCGCAGCAGCAACAACAAAGGGGTGGACTTGCAC
GCTCTGCAAGCGCACGTTCAAAACCTGATGATGCGCATCACCGAGGCCGA
AGCCGAGACCGCTCTCATGTCTGAAGAGAATCAAAAGCTGCGCTTGGATA
ACAAGGTAGAACAGTCCTACCTTAAAACCATGACGAAGGCCAAGAACGAT
GAAATCCGCGTGCTCAAGGCCCGGATAAAAGAGGTAGAGGGCAAGATGTC
TGCTTGTGAGCAGCAACAAGATGAAGGTACCGACAAGGAAGAGCTACGCA
AGGCAGAACTGCGGACAGAATCGCTTGAAAAGGAACTGAAGGGTCTCCAC
ACGCAGCTGGAGCTTGCAATGAAGGAAAATTCGCATCAAGAGCCCGTGAT
GAAGGCAAGTGTCCCACCGCCGCGAGCAGTTCAAGAGGAGCAGCAGCAGG
AGCGGCAGCAGAGACGGCAAATGCAAAAATCCAATAGTATTAAACCCCTG
ATAACATACAGGACCGTCTCCGTCCCCGAGCCCCAACCACTAAATTCTTA
TTGGGAAACACGTCTACGGAAGCTCTTTTCCCTTGCCCAGACCGACCCCG
TATCCCTCCTCTCCAAGCTTGACGACCCCCAAAATGACCCCTTAGACGTC
AAATTTGCAAGCCCTGAAAATTTTACCTGTCCTCCTCCCGAACAACGCCT
CACGCAACCCGATCTAAGACGGATGGAGATGGCAGCTCAATTTCGTGATG
GGCAGGGGTTTATTTTTTTCCAGCATTTGCGAAAGGCGGGCGGGACGGGT
TTCTGCGATTTGGCCACCAGGAACATGCCTAAGCAGATTCCCCCGTATTA
TTGTATGCCCGACGGGCGTGGTACGCTTGCGACGCCTCCTTGGAGTACGT
CATGGTTGTTGGAGACAATGGATGAGAAGGGGTGGCGAATAGCGGCGAAT
GAGTGGGACCCTTTTGTGAGGTCGAAATTTGCGATTGGCGATGCGGTTTT
CGCGACGACTCTGCGTGACCCTACGGATCGGTGGTTCTCCCAATACAGGT
TTGAGCACTTGGAGCATCGTGATGGAAGCTCGGAGGATGAGACACCCGTG
CCGTTTCGCGAGTGGTACGATAAGATGGTGACATGGAATATGGGTGATAA
TTACTATGTGAAGACGTTTTTGGGAGAGGAAGATCCGATGGATAAAGATG
CGTTGGAGAAAAAAGGCCGGAATGGTGTCCCGCTTGTGCACAATGATTTC
TATTGGGGTTATCACAAATACCAGGAGCGGGTGTTTGAATGGACTGATTT
TAATGTGGCTATTGATACTGTGAGAAGGTTTCATGTGGTGTTGGTGCTTG
AGTGGTTGAAAGATTCTGATAAGATGATTGAGGAAATATTTGGGTGGTCT
CAGGCTCCGAGGCAGGTTTTGCCTCATGAGGTGCAGGCGGTACGGAGTGA
TAAGAAGAGTAAAAGTGCCAGAGACTCGCTCGGAGAGGAGTTGTTTGAGG
AGATAAGGAAAAGGAATGTGATAGATCATTTGTTTTACGCGGTGACGCGG
AGAATTTTCTTGGAACGATATGCGTGTGGGGAGGTTTAGCTAGAGGCAGA
GATACGGAAGGGGAGATTATTCATGAGGAGACGGATAATTGCGGAATTGG
AGGAGTGATCTCTGCTTGAGATTTACTACATGCATGTATAGGGAAAGGCC
CAAAAGAGCAAT back to topCoding sequence (CDS) from alignment at chr6:641876..644487+ >NO06G02210.1 ID=NO06G02210.1|Name=NO06G02210.1|organism=Nannochloropsis oceanica|type=CDS|length=1863bp|location=Sequence derived from alignment at chr6:641876..644487+ (Nannochloropsis oceanica) ATGCGCGCTATGCACACAAAAAACATACAGGAAGGCGTCATGGTTGAGCC CTACCTGCACCGTCACTACGCTCCGCCCTCGTCCGCCTCCTCGGCGGTCG CCCACACCCGCCGGCCCCGTTCTTCTTCCTCCTTCTATGGCCGGGCCGCC GCCCGACTGCCTCACCTGCGCATGGATGCGACTCTGTTCCTGCTCATTGT ATGCTTCACAATGGGCGTCTACCTTCCCGGCTTGGTCGGAATGTCCCCGC GGATTGATTCGGTCGGCGGTGGGAGCGGTGCTCTTTTCAGCCGCAGCAGC AACAACAAAGGGGTGGACTTGCACGCTCTGCAAGCGCACGTTCAAAACCT GATGATGCGCATCACCGAGGCCGAAGCCGAGACCGCTCTCATGTCTGAAG AGAATCAAAAGCTGCGCTTGGATAACAAGGTAGAACAGTCCTACCTTAAA ACCATGACGAAGGCCAAGAACGATGAAATCCGCGTGCTCAAGGCCCGGAT AAAAGAGGTAGAGGGCAAGATGTCTGCTTGTGAGCAGCAACAAGATGAAG GTACCGACAAGGAAGAGCTACGCAAGGCAGAACTGCGGACAGAATCGCTT GAAAAGGAACTGAAGGGTCTCCACACGCAGCTGGAGCTTGCAATGAAGGA AAATTCGCATCAAGAGCCCGTGATGAAGGCAAGTGTCCCACCGCCGCGAG CAGTTCAAGAGGAGCAGCAGCAGGAGCGGCAGCAGAGACGGCAAATGCAA AAATCCAATAGTATTAAACCCCTGATAACATACAGGACCGTCTCCGTCCC CGAGCCCCAACCACTAAATTCTTATTGGGAAACACGTCTACGGAAGCTCT TTTCCCTTGCCCAGACCGACCCCGTATCCCTCCTCTCCAAGCTTGACGAC CCCCAAAATGACCCCTTAGACGTCAAATTTGCAAGCCCTGAAAATTTTAC CTGTCCTCCTCCCGAACAACGCCTCACGCAACCCGATCTAAGACGGATGG AGATGGCAGCTCAATTTCGTGATGGGCAGGGGTTTATTTTTTTCCAGCAT TTGCGAAAGGCGGGCGGGACGGGTTTCTGCGATTTGGCCACCAGGAACAT GCCTAAGCAGATTCCCCCGTATTATTGTATGCCCGACGGGCGTGGTACGC TTGCGACGCCTCCTTGGAGTACGTCATGGTTGTTGGAGACAATGGATGAG AAGGGGTGGCGAATAGCGGCGAATGAGTGGGACCCTTTTGTGAGGTCGAA ATTTGCGATTGGCGATGCGGTTTTCGCGACGACTCTGCGTGACCCTACGG ATCGGTGGTTCTCCCAATACAGGTTTGAGCACTTGGAGCATCGTGATGGA AGCTCGGAGGATGAGACACCCGTGCCGTTTCGCGAGTGGTACGATAAGAT GGTGACATGGAATATGGGTGATAATTACTATGTGAAGACGTTTTTGGGAG AGGAAGATCCGATGGATAAAGATGCGTTGGAGAAAAAAGGCCGGAATGGT GTCCCGCTTGTGCACAATGATTTCTATTGGGGTTATCACAAATACCAGGA GCGGGTGTTTGAATGGACTGATTTTAATGTGGCTATTGATACTGTGAGAA GGTTTCATGTGGTGTTGGTGCTTGAGTGGTTGAAAGATTCTGATAAGATG ATTGAGGAAATATTTGGGTGGTCTCAGGCTCCGAGGCAGGTTTTGCCTCA TGAGGTGCAGGCGGTACGGAGTGATAAGAAGAGTAAAAGTGCCAGAGACT CGCTCGGAGAGGAGTTGTTTGAGGAGATAAGGAAAAGGAATGTGATAGAT CATTTGTTTTACGCGGTGACGCGGAGAATTTTCTTGGAACGATATGCGTG TGGGGAGGTTTAG back to top
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