NO06G02050, NO06G02050 (gene) Nannochloropsis oceanica

Overview
NameNO06G02050
Unique NameNO06G02050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3472
Alignment locationchr6:601155..604626 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:601155..604626 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO06G02050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000256NSK000256Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02050.1NO06G02050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597222gene_6515Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02050.1NO06G02050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02050 ID=NO06G02050|Name=NO06G02050|organism=Nannochloropsis oceanica|type=gene|length=3472bp
CTTCAAGCCTGGCCTCCTCCCTCCCTCATATCTGTTCCTTTTCTGCGCCT
AGCCACGACCATTGCGTCGCGCTCAAGTCGCTACAAAACATGTGCTAGGT
TGAGAAAGGTATTTTAAAACGCATACTTGATGTAACTGATCCACCCCGTG
CACTTCTACAGAGGCCTCTTGAAGACACTATTCTTCACCGGCCTACGGCG
AAAAACTCCTCTGCGCGACGACGTCGTCGATGTCATAGCCTGGTCGGTTG
GCTTAAGCTCTTGTAAGACGCCTCAAGTGTACGATCTCTCGATTTTTATT
ACTTCAGGAAGAGCCCTGTAGCCTATTATGGCAAGCAAGGCAAGCGGGCA
TACTAATCCCAACCAACTCGCCGAAGAGCTCCGAGCCCTAGAGCTGCCAT
ACCTCGCTTCGGCCAAGCGCGTGGTGGCTGGTCCGACGGAATTAAGTCAA
CTTACGTGGGAGACGCGCCAGGCATGTTTTTTGGCACTGTTGGCAGAAGT
CCCGGAGGCACAGACGGCCGAAGCCCTGAGTGCCCTGGTTCATAAACGTC
GACAAGGCCGCAAGGCAGAGCGGGCGTTGGAGAAAAGTGGGCGGGTGGAA
GACCTGGGCCTTTTGCCCGAGTATTGTCGACAACAAGAAGATGCATTTCG
AGAGAACTTTATGGTGGCAGTGATTGAGGAGATGCAGCGGCAGCAGGCAC
CAAAAGGGTTGTGTAATGTGCGGCTGCTGCTAAAGGACAAGGCGTTGTGT
CTCCAGGCGATTAGCTTTTTGGCTGCCCGTCATAGGTCACGTACTGGTTT
GGAGCACCGCGTCTCCAGCAGCAGTAGAAGCAGTAGCAGTCGGCTCACCG
CGTCTTTGCATCATCGTTCTCCTTTACTGATGATGCCTCGACGGGCTGCG
GCTGGGCACACAGATGCAGCAGATAAAGCACTGGAGTACACCCCCACGCG
TTTGAGCAGCAACGGCAACAGCAGCAAGAGCAACAGCAGCGGCAGCAAGG
GCATCAGTAAAAGGACTTGTCTTCCATCAGCCCACAAGACTCCTCTTTTA
CCTTCCAGCATGCTGCGTCCTAGCCGTGCCGACACCAACAGGAGCATTAG
CAGCAGCGACACTGGGAGCAGTAGCAGAAGCAGCAGTAAGAAAATAAGCC
GCAGCACCAACATCAATGGGAGCGACAAAGCGAGGAAAGGCACGGCCCAT
CCTTCCATGATTGAAAACACTTGCGAGTTCTTGGCAAGGGGCTTGAGGCG
GTTGCATCTGGAAGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAG
AGGAGGAAGAGGAGGAGGAGGACGAGGAGGACGAAGGCAGGCTGGAACGT
CAGTCGGCGTGGGTCATGCCTGGTGGTGGTAGTAGGATGAAGACAGAGGA
TAATAAGGACGAGGGTGGTCAGGGAGAGGAAAAGGAGGAGGAGGAGGAGG
AGGAGGAGGCGGAGAGATGTAATCGTGATACTCCATCCTCATGGTCGAAC
AGCAGCAGCAGTGAAGGAGAAGAGGAACCGGAAGTCCGACGGCCTATTCG
CCGGACTCAGCGACGAGCTGCTGAAGAGGTGGGAAAAGGACAAGAAGACG
AAAGAGACGTAGAAGACGAAGACGAAGGATGGCGCCACCGAAGTGCTCAC
CGTCATCGTCGAAGACCATCCCCTCGGGTCAAGCACCCTCCTTCTATCGA
TTCCTCCGTCCCTGCCTCCCGCAAAACTAAGCCTACTTCTGCGCCAAACG
ATCTACTACCATCGTCTGCAGCAGCAGCAGCAGCAGCAGCAAGAAATCCT
AAGCCCTCTGCGAGCAAACCAAAAAATCATGCAAGGACATTCAAAGTGGC
CGCGACAAAAATAATAGAAGCGCACCGACCGTCTAGGGTCAGCAGTAGCA
ACAGCAGCAACAACAACAAATCCAAGAATCTCAACCCCACCCCTCCCTCC
CTTCCTCGGGCCCGTCCTGTCCTTCATAATAATCCTCCTCCTCCTCCTCC
CCCTCCTCCTCCTCCCCCTCCTCCTTCTCCTCCTGCAGATGGCACCATGG
AAAGCGAGCTCGAGCAAAACCTCCGCGCCGACAACGCCGCCCTCCGCCTC
GCCCTTGCCGAACGAGCCTCCCTCCATGAAGCCCTCCTCCTCGTCCACCC
TCCCTCCCTCCCTCCCTCTTCCTCACCCCCCGACTCGGTCGATGAACGCT
GCCTCAGGTTGCTCGAAAATCAGAATTTGCAATTACAAAGACATGTGCAA
CAACTCAAAGATCTCCTGCAGGGGGAGCAGGAGGCAGCGGATGGATTGAC
CAATCTCTTATCCGCTCTCGAGCGAAGAGTGACGGCTCTATTGGAAGATG
TAGAGAGAGGAGGAGGAAGGGAAGGAGGGAGGGATACTCCAGGAGGACGA
CGACGGTCTTCTCCGGGAGGGATAGGGAGAGAGGGATGGCTGCAGGAATT
CCTGCAGGAGTTACGTCAGCTGCAGCTGCAGTGGCGGTCGGTGAGGAGGG
CTACGCGCATGTCTCAGGGAGCACAGCGATTGTTTCTGCCCGCGGACGCG
TTGGTGTATCTCAAGAAATCGAGTGAAGGGCGTTATGCTGGAGGGGAAGA
GGAAGGGAAGGAGGATACCACAGCAGGATTGAACGGGGAATGGGAGGACC
GCGCGCGAATTTGGGGCGTGCGAGGAGGTAGCGAGGGAGAAAGGGAGGGA
GAGAGGGGAGCCATGCTATGTGAGTTGGATGGTGATAAAGTCCACGCGCT
TCAACGAGCTCTTCGCTCCCTCGTGAGGAGGCTAAGCACACTTATATCGG
AGGATGGCGGGGAAGGGGAAAGGGTACACGTTCAAGAGCAGGCTCGTGCT
CTAGCCCTTGCAGTAGCGCACCTCGGGGTAGCATTACCCGCTACCTTCTC
CTCCTTCCCTTCCTCCTCCTCCTCCTCTTCCTACTCTGCCTTGCCGGTAC
GTCCTCTAACTCGTGAACGGGAGTTACTGGAGGGTTTTGATAGCCTTTTG
GTGCCACGTTTGAAACCTAGTGAGTTGCAACGGCGCGTGCAGAAGCTGCA
GCGGAAGGTGCTGGGAGAGAGAAGGGCATTGATGTGGGGCATTAACAATA
CGACGGCGAATTCAGTGGATGGGCAAGAGGAGGATGACGAGGACGAGGAT
GAGGAGGAGGACGAGGAGGTTGCAAACGAATATACGGCAGCGGCGGGAAT
GAAATCGTCGCAGCCGACGTCCAGGACCACGGGGAGAAGGGGGATGGGTG
AGCACCGGTAGCAGCAGTAGCAGAGTAGCAGCAGTAGTAGCTGCTGCCAC
AGCATCAGCGATAATTTCAAAAGCAGTGGGCTGACATCAGGTGGTGGAAT
GCGATCTTCATCATTCAGGCGGCGCCATAACTTCGAAGCTGATTGTTGGG
TTACTTATTGACGAGTGAATGCACCAAGCATAATGTCAATATGAATACAA
AGGCATAACACAGTGCGTAGGG
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protein sequence of NO06G02050.1

>NO06G02050.1-protein ID=NO06G02050.1-protein|Name=NO06G02050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=978bp
MASKASGHTNPNQLAEELRALELPYLASAKRVVAGPTELSQLTWETRQAC
FLALLAEVPEAQTAEALSALVHKRRQGRKAERALEKSGRVEDLGLLPEYC
RQQEDAFRENFMVAVIEEMQRQQAPKGLCNVRLLLKDKALCLQAISFLAA
RHRSRTGLEHRVSSSSRSSSSRLTASLHHRSPLLMMPRRAAAGHTDAADK
ALEYTPTRLSSNGNSSKSNSSGSKGISKRTCLPSAHKTPLLPSSMLRPSR
ADTNRSISSSDTGSSSRSSSKKISRSTNINGSDKARKGTAHPSMIENTCE
FLARGLRRLHLEGEEEEEEEEEEEEEEEEEEDEEDEGRLERQSAWVMPGG
GSRMKTEDNKDEGGQGEEKEEEEEEEEAERCNRDTPSSWSNSSSSEGEEE
PEVRRPIRRTQRRAAEEVGKGQEDERDVEDEDEGWRHRSAHRHRRRPSPR
VKHPPSIDSSVPASRKTKPTSAPNDLLPSSAAAAAAAARNPKPSASKPKN
HARTFKVAATKIIEAHRPSRVSSSNSSNNNKSKNLNPTPPSLPRARPVLH
NNPPPPPPPPPPPPPPSPPADGTMESELEQNLRADNAALRLALAERASLH
EALLLVHPPSLPPSSSPPDSVDERCLRLLENQNLQLQRHVQQLKDLLQGE
QEAADGLTNLLSALERRVTALLEDVERGGGREGGRDTPGGRRRSSPGGIG
REGWLQEFLQELRQLQLQWRSVRRATRMSQGAQRLFLPADALVYLKKSSE
GRYAGGEEEGKEDTTAGLNGEWEDRARIWGVRGGSEGEREGERGAMLCEL
DGDKVHALQRALRSLVRRLSTLISEDGGEGERVHVQEQARALALAVAHLG
VALPATFSSFPSSSSSSSYSALPVRPLTRERELLEGFDSLLVPRLKPSEL
QRRVQKLQRKVLGERRALMWGINNTTANSVDGQEEDDEDEDEEEDEEVAN
EYTAAAGMKSSQPTSRTTGRRGMGEHR*
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Synonyms
Publications