NO06G02030, NO06G02030 (gene) Nannochloropsis oceanica

Overview
NameNO06G02030
Unique NameNO06G02030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1076
Alignment locationchr6:598302..599377 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:598302..599377 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO06G02030 vs. NCBI_GenBank
Match: PRW45733.1 (hypothetical protein C2E21_5879 [Chlorella sorokiniana])

HSP 1 Score: 64.3 bits (155), Expect = 5.600e-7
Identity = 52/135 (38.52%), Postives = 66/135 (48.89%), Query Frame = 0 
Query:   91 EVNKRRATASQNFKEKFNLSKNGQQDPAVKWM---ELRKKGVIGEREKYEQYGETNRGIIIPQVPFGNTKYDEGERFDLRLPYVDEGYVDESAS---LG-NTLKRLFGFGKESKPTTLPQGPGSDGPGAARGKGK 219
            EV +RRA  S+             QDPA K     E R +    + ++     E   GII+P  PFG   YD GERFDLRLP+VD+G  DE  +   LG   L + FGFGK+          G +G  AA+GK K
Sbjct:   70 EVKERRAEVSRY-----------MQDPAYKKQVDEEKRARFKARKEQEARDNPEPKFGIIVPLAPFGIADYDGGERFDLRLPFVDQGDPDEELANDPLGLKQLGKAFGFGKK----------GGEGDDAAQGKRK 183
[Close]
BLAST of NO06G02030 vs. NCBI_GenBank
Match: XP_005793627.1 (hypothetical protein EMIHUDRAFT_351216, partial [Emiliania huxleyi CCMP1516] >EOD41198.1 hypothetical protein EMIHUDRAFT_351216, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 63.9 bits (154), Expect = 7.300e-7
Identity = 61/164 (37.20%), Postives = 76/164 (46.34%), Query Frame = 0 
Query:   47 RGVMTAGLFDGLFLSDTE----KEDAYQKQQEILRARQNPEKQKAYFQEVNKRRATASQNFKEKFNLSKNGQQDPAVKWMELRKKGVI-GEREKYEQYGETNRGIIIPQVPFGNTKYDEG---ERFDLRLPYVDEGYVDESA-------SLGNTLKRLFGFGKE 196
            R  +  G FD +F    E    KE  ++ QQ +L  R+NPE  +AY  EV +RRA  S    E   L K G  +    W  LR +G + G  E   + GE + G              EG   ER D RLP+VD GYVDESA        L   LK LFG G+E
Sbjct:   35 RAAVRLGFFD-MFQESAESKARKEAEWEAQQAMLARRRNPEAMEAYQSEVEERRAEISSKDAELKELQKTGDIE---AWEALRAEGKLQGSDELEREAGERSWG-------------GEGLVAERIDTRLPFVDSGYVDESAPSLPDMXXLLGGLKGLFGGGEE 181
[Close]
BLAST of NO06G02030 vs. NCBI_GenBank
Match: XP_005789759.1 (hypothetical protein EMIHUDRAFT_373170 [Emiliania huxleyi CCMP1516] >EOD37330.1 hypothetical protein EMIHUDRAFT_373170 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 63.5 bits (153), Expect = 9.500e-7
Identity = 61/164 (37.20%), Postives = 76/164 (46.34%), Query Frame = 0 
Query:   47 RGVMTAGLFDGLFLSDTE----KEDAYQKQQEILRARQNPEKQKAYFQEVNKRRATASQNFKEKFNLSKNGQQDPAVKWMELRKKGVI-GEREKYEQYGETNRGIIIPQVPFGNTKYDEG---ERFDLRLPYVDEGYVDESA-------SLGNTLKRLFGFGKE 196
            R  +  G FD +F    E    KE  ++ QQ +L  R+NPE  +AY  EV +RRA  S    E   L K G  +    W  LR +G + G  E   + GE + G              EG   ER D RLP+VD GYVDESA        L   LK LFG G+E
Sbjct:   35 RAAVRLGFFD-VFQESAESKARKEAEWEAQQAMLARRRNPEAMEAYQSEVEERRAEISSKDAELKELQKTGDIE---AWEALRAEGKLQGSDELEREAGERSWG-------------GEGLVAERIDTRLPFVDSGYVDESAPSLPDXXXLLGGLKGLFGGGEE 181
The following BLAST results are available for this feature:
BLAST of NO06G02030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 13
Match NameE-valueIdentityDescription
PRW45733.15.600e-738.52hypothetical protein C2E21_5879 [Chlorella sorokin... [more]
XP_005793627.17.300e-737.20hypothetical protein EMIHUDRAFT_351216, partial [E... [more]
XP_005789759.19.500e-737.20hypothetical protein EMIHUDRAFT_373170 [Emiliania ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000258NSK000258Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02030.1NO06G02030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597214gene_6513Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100025g27gene4304Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02030.1NO06G02030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02030 ID=NO06G02030|Name=NO06G02030|organism=Nannochloropsis oceanica|type=gene|length=1076bp
AAAACACACAGAACAGACTCCCCTTTCCTTGCCCCAGCTCCCGCCATGAA
GGCCTCCCTCTATCTCGTCCTCGCGACGCTCTTCCTAGCATGCTGCTTCA
CGACGTTTGCCTTTGTGGGTCACTCCGCCTTGCCATCAACCAGGATCTCC
ACGGTATTAACAGCAATTCGCGCGACGCGCACCCGTGGCGTCATGACCGC
TGGGCTCTTCGATGGCCTCTTTTTGTCGGACACCGAGAAGGAGGATGCGT
ACCAAAAGCAGCAAGAAATTCTGCGCGCCCGTCAAAACCCAGAAAAACAA
AAGGCGTACTTTCAAGAGGTGAACAAGCGCCGAGCGACCGCCAGTCAAAA
TTTCAAGGAGAAATTTAACCTGTCCAAGAACGGGCAACAGGACCCAGCCG
TCAAATGGATGGAGTTGAGGAAGAAAGGCGTGATAGGGGAACGGGAGAAG
TACGAGCAGTACGGGGAGACGAATAGGGGCATCATTATTCCTCAGgtaca
ttgttgtacgaaatttggaccaccttcacagtcccatgtgcgcattatct
cccttccttctttctccctcctctcttcctccccttgcagGTCCCCTTCG
GCAATACTAAGTACGACGAGGGCGAGCGGTTCGACTTGCGTCTGCCTTAT
GTGGATGAGGGATACGTAGATGAATCTGCCAGCTTGGGGAATACCTTGAA
ACGATTGTTTGGCTTTGGAAAGGAGTCGAAACCCACGACGCTACCGCAGG
GCCCCGGATCGGATGGGCCAGGCGCCGCGAGAGGAAAGGGGAAAAGTGGG
TATGGTGGAGGGAAGAAGAAGTAGATAGCAGCAGGAGGGGCTGCAAGTAC
ATCTTAGAAATATAGCGAGTCAAAGGAACAGAAGAGAGGTGCCTTGTGAA
GAGAGGTGCCTTGTGAAGGTGTGGGCGGTGTGTTGGCATGCGGGAGGAGC
AGTAGTAGCCAAGGGTTGTTATTTATTGTGTGTTGCGTTTAGTTTTCATT
CTTTTTATTTCATTTTGTTACATATTGCCAGTGGCGGGAAAAGGAAGGGA
AAAGAACAATCGTACCAACCCCGAAT
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protein sequence of NO06G02030.1

>NO06G02030.1-protein ID=NO06G02030.1-protein|Name=NO06G02030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MKASLYLVLATLFLACCFTTFAFVGHSALPSTRISTVLTAIRATRTRGVM
TAGLFDGLFLSDTEKEDAYQKQQEILRARQNPEKQKAYFQEVNKRRATAS
QNFKEKFNLSKNGQQDPAVKWMELRKKGVIGEREKYEQYGETNRGIIIPQ
VPFGNTKYDEGERFDLRLPYVDEGYVDESASLGNTLKRLFGFGKESKPTT
LPQGPGSDGPGAARGKGKSGYGGGKKK*
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Synonyms
Publications