NO06G01980, NO06G01980 (gene) Nannochloropsis oceanica

Overview
NameNO06G01980
Unique NameNO06G01980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1283
Alignment locationchr6:590020..591302 +

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Properties
Property NameValue
DescriptionProtein CMSS1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:590020..591302 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR032704Cms1
Homology
BLAST of NO06G01980 vs. NCBI_GenBank
Match: EWM26246.1 (uncharacterized protein Naga_100025g24 [Nannochloropsis gaditana])

HSP 1 Score: 296.6 bits (758), Expect = 1.000e-76
Identity = 165/237 (69.62%), Postives = 187/237 (78.90%), Query Frame = 0
Query:  122 ALTTAEAQSTYLWERYVNLLNVSPLDADVNRFPPTCFTLPSSSSSSGFTALKRVKGKQPAKPTGHAQTSDSHPGKGDANVTDFLQQAFPQLQKIASDKSQREMAHPFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLPAMTARKERKDVNEQLRLALF 359
            +L TAEA S+YLW+RYV+LL++SPLDAD N FPP CF LP SSS    +   R +  +P   +  AQ +     +G ANVT+FLQ AFPQLQ IA+DKSQRE   PFVVLLSSSAVRANELAKDLR+KLRNLKTAKLFAKHLKV AQVEVLQSEF+ALAVGTPNRL KLLEM A+SL RCRLVVLD+SFKDSK FDLL LPG+A DTAL LRDHVL AM AR    +  ++LRLALF
Sbjct:    6 SLVTAEALSSYLWKRYVSLLSISPLDADANLFPPDCFALPVSSSMPSASTPGRKRKSRPLPRSQPAQPT----AEGGANVTEFLQSAFPQLQMIATDKSQREKGMPFVVLLSSSAVRANELAKDLRIKLRNLKTAKLFAKHLKVPAQVEVLQSEFHALAVGTPNRLSKLLEMGALSLDRCRLVVLDTSFKDSKGFDLLHLPGLAADTALFLRDHVLKAMAARSS-SEARDRLRLALF 237          
BLAST of NO06G01980 vs. NCBI_GenBank
Match: ORX76731.1 (hypothetical protein BCR32DRAFT_248500 [Anaeromyces robustus])

HSP 1 Score: 92.4 bits (228), Expect = 3.000e-15
Identity = 50/150 (33.33%), Postives = 89/150 (59.33%), Query Frame = 0
Query:  199 ANVTDFLQQAFPQLQKIASDKSQREMAH--PFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLPAMTARKER 347
            +N++ F++Q +P  +K      +    H  P V++++ SA+RA E+ + L    +  K  KLF+KH+KV  QVE L      +AVGTPNRLIKL E  ++++ +  L+V+D +FKDSK+ ++  +P + KD    ++ H +  +  + ++
Sbjct:   59 SNISSFVKQVYPNWKKHLGKPPKETDYHGQPSVLVVTQSAIRAVEVIRALSEFSKYCKVGKLFSKHMKVKDQVEFLNQSVVKIAVGTPNRLIKLAENESLNMNKLDLLVIDYTFKDSKNRNIFEIPEIRKDLLTFIKQHCINRIKEKTQK 208          
BLAST of NO06G01980 vs. NCBI_GenBank
Match: ORY10523.1 (hypothetical protein LY90DRAFT_465239 [Neocallimastix californiae])

HSP 1 Score: 92.4 bits (228), Expect = 3.000e-15
Identity = 50/141 (35.46%), Postives = 83/141 (58.87%), Query Frame = 0
Query:  199 ANVTDFLQQAFPQLQKIAS--DKSQREMAHPFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVL 338
            +N++ F++Q +P  +K      K       P V++++ SA+RA E+ + L    +  K  KLF+KH+KV  QVE L      +AVGTPNRLIKL E  ++ + +  L+V+D +FKDSK+ ++  +P + KD    ++ H +
Sbjct:  197 SNLSSFIKQVYPNWKKNLGKPPKESDYKGQPSVLVVTQSAIRAVEVIRSLNEFSKYCKVGKLFSKHMKVKEQVEYLSKSVVKIAVGTPNRLIKLAENESLDMNKLDLLVIDYTFKDSKNRNIFEIPEIRKDLLAFIKQHCI 337          
BLAST of NO06G01980 vs. NCBI_GenBank
Match: PAN37519.1 (hypothetical protein PAHAL_G01173 [Panicum hallii])

HSP 1 Score: 89.7 bits (221), Expect = 1.900e-14
Identity = 56/139 (40.29%), Postives = 90/139 (64.75%), Query Frame = 0
Query:  227 PFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLPAMTARKER---------KDVNEQLRLA 357
            P ++++SS+A+R+ EL + L+M  +  +  KLFAKHLKV+ QV +L +  N +A GTP+R+ KL+++ A+SL+R +LVVLD   KD+KSF+L TLP V+K+   L + ++ P +     R         +D+ + L LA
Sbjct:  167 PALLVISSAALRSLELLRGLKMFTKECRPVKLFAKHLKVEEQVAMLNARVN-IACGTPSRIKKLIDIEALSLSRLKLVVLDMQ-KDAKSFNLFTLPQVSKEFWDLYKGYLDPKVREGNTRICFYGAVSERDITKALPLA 303          
BLAST of NO06G01980 vs. NCBI_GenBank
Match: ORX59228.1 (hypothetical protein BCR36DRAFT_343073 [Piromyces finnis])

HSP 1 Score: 89.4 bits (220), Expect = 2.500e-14
Identity = 47/149 (31.54%), Postives = 90/149 (60.40%), Query Frame = 0
Query:  200 NVTDFLQQAFPQLQKIASDKSQREMAH--PFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLPAMTARKER 347
            N++ +++Q +P  +K      +    H  P V++++ SA+RA E+ + L    +  K  KLF+KH+KV  QVE L      +AVGTPNRLIKL E +++++ +  L+V+D ++KDSK+ ++  +P + KD  + ++ + +  +  + ++
Sbjct:  186 NLSSYIKQVYPNWKKHLGKPPKESDYHGQPSVLVVTQSAIRAVEVIRALSEFSKYCKVGKLFSKHMKVKEQVEFLSKSVVKIAVGTPNRLIKLAENDSLNMNKLDLLVIDYNYKDSKNRNIFEIPEIRKDLLIFIKQYCIDRIKDQSQK 334          
BLAST of NO06G01980 vs. NCBI_GenBank
Match: OAY83729.1 (Protein CMSS1 [Ananas comosus])

HSP 1 Score: 89.0 bits (219), Expect = 3.300e-14
Identity = 57/139 (41.01%), Postives = 87/139 (62.59%), Query Frame = 0
Query:  227 PFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLPAMTARKER---------KDVNEQLRLA 357
            P ++++S+SA+R+ EL + L+   R+ +  KLFAKH+KV+ QV  L+   N +A GTP+R+ KL+++ AMSL+R ++VVLD   +D+KSF L TLP V+ +   L R H+ P +     R         KDVN+ L  A
Sbjct:  172 PALLVISTSALRSLELLRGLKPFTRDCRAVKLFAKHMKVEEQVTSLKGRVN-IASGTPSRIKKLIDLEAMSLSRLQVVVLDMQ-RDAKSFSLFTLPQVSTEFWDLYRSHLEPKVLCGDTRICFYGAVRKKDVNKALASA 308          
BLAST of NO06G01980 vs. NCBI_GenBank
Match: XP_020112293.1 (protein CMSS1 [Ananas comosus])

HSP 1 Score: 89.0 bits (219), Expect = 3.300e-14
Identity = 57/139 (41.01%), Postives = 87/139 (62.59%), Query Frame = 0
Query:  227 PFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLPAMTARKER---------KDVNEQLRLA 357
            P ++++S+SA+R+ EL + L+   R+ +  KLFAKH+KV+ QV  L+   N +A GTP+R+ KL+++ AMSL+R ++VVLD   +D+KSF L TLP V+ +   L R H+ P +     R         KDVN+ L  A
Sbjct:  174 PALLVISTSALRSLELLRGLKPFTRDCRAVKLFAKHMKVEEQVTSLKGRVN-IASGTPSRIKKLIDLEAMSLSRLQVVVLDMQ-RDAKSFSLFTLPQVSTEFWDLYRSHLEPKVLCGDTRICFYGAVRKKDVNKALASA 310          
BLAST of NO06G01980 vs. NCBI_GenBank
Match: XP_002446236.1 (protein CMSS1 [Sorghum bicolor] >EES10564.1 hypothetical protein SORBI_3006G040000 [Sorghum bicolor])

HSP 1 Score: 88.2 bits (217), Expect = 5.700e-14
Identity = 52/119 (43.70%), Postives = 82/119 (68.91%), Query Frame = 0
Query:  220 SQREMAHPFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLP 339
            S+  M  P ++++SSSA+R+ +L + L+M  +  +  KLFAKHLKV+ QV +L +  N +A GTP+R+ KL+++ A+SL+R +LVVLD   KD+KSF L TLP V+ +   L + ++ P
Sbjct:  153 SEIAMGSPTLLVISSSALRSLDLLRGLKMFTKECRPVKLFAKHLKVEQQVGMLHARVN-IACGTPSRIKKLIDLEALSLSRLKLVVLDMQ-KDAKSFTLFTLPQVSNEFWDLYKGYLDP 269          
BLAST of NO06G01980 vs. NCBI_GenBank
Match: NP_001145654.1 (uncharacterized protein LOC100279147 [Zea mays] >ACG49080.1 hypothetical protein [Zea mays] >ONM18307.1 DEAD-box helicase family protein [Zea mays])

HSP 1 Score: 87.8 bits (216), Expect = 7.400e-14
Identity = 51/112 (45.54%), Postives = 79/112 (70.54%), Query Frame = 0
Query:  227 PFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLP 339
            P ++++SSSA+R+ +L + L+M  +  +  KLFAKHLKV+ QV +L +  N +A GTP+R+ KL++M A+SL+R +LVVLD   KD+KSF L TLP V+ +   L + ++ P
Sbjct:  160 PTLLVISSSALRSLDLLRGLKMFTKECRPVKLFAKHLKVEEQVAMLNARVN-IACGTPSRIKKLIDMEALSLSRLKLVVLDMQ-KDAKSFTLFTLPQVSNEFWDLYKGYLDP 269          
BLAST of NO06G01980 vs. NCBI_GenBank
Match: PUZ46677.1 (hypothetical protein GQ55_7G101000 [Panicum hallii var. hallii])

HSP 1 Score: 87.4 bits (215), Expect = 9.600e-14
Identity = 50/112 (44.64%), Postives = 80/112 (71.43%), Query Frame = 0
Query:  227 PFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLP 339
            P ++++SS+A+R+ EL + L+M  +  +  KLFAKHLKV+ QV +L +  N +  GTP+R+ KL+++ A+SL+R +LVVLD   KD+KSF+L TLP V+K+   L + ++ P
Sbjct:  168 PALLVISSAALRSLELLRGLKMFTKECRPVKLFAKHLKVEEQVAMLNARVN-ITCGTPSRIKKLIDIEALSLSRLKLVVLDMQ-KDAKSFNLFTLPQVSKEFWDLYKGYLDP 277          
The following BLAST results are available for this feature:
BLAST of NO06G01980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26246.11.000e-7669.62uncharacterized protein Naga_100025g24 [Nannochlor... [more]
ORX76731.13.000e-1533.33hypothetical protein BCR32DRAFT_248500 [Anaeromyce... [more]
ORY10523.13.000e-1535.46hypothetical protein LY90DRAFT_465239 [Neocallimas... [more]
PAN37519.11.900e-1440.29hypothetical protein PAHAL_G01173 [Panicum hallii][more]
ORX59228.12.500e-1431.54hypothetical protein BCR36DRAFT_343073 [Piromyces ... [more]
OAY83729.13.300e-1441.01Protein CMSS1 [Ananas comosus][more]
XP_020112293.13.300e-1441.01protein CMSS1 [Ananas comosus][more]
XP_002446236.15.700e-1443.70protein CMSS1 [Sorghum bicolor] >EES10564.1 hypoth... [more]
NP_001145654.17.400e-1445.54uncharacterized protein LOC100279147 [Zea mays] >A... [more]
PUZ46677.19.600e-1444.64hypothetical protein GQ55_7G101000 [Panicum hallii... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000261NSK000261Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G01980.1NO06G01980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597205gene_6507Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100025g24gene4307Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G01980.1NO06G01980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G01980 ID=NO06G01980|Name=NO06G01980|organism=Nannochloropsis oceanica|type=gene|length=1283bp
ATGGGGGACACCTTGGACGACGGTTTCGAGGCCTACGACCTGGAAGCGGA
CGCGGAGGAATTTGCGGACGACGACGAGgtgagtcaagggcgcacttgct
gatgagagacgatgcgtggggtcgtgtgggccatccgagtatccatgtca
tttaccacgcctccccctcccgcacaaagCCACTGATCGAAGCGGGACTC
TCCAAGCGCAAGGCTGAGGATTGGGAGGAGGGCAAGGACAAGAAGTCCAA
GCAGCAATCCAAGAAGCAGAAGCAAAAGGTACAAGCCACGGGTGGGGAAG
AGGAGGAGGAGGGTGGGGAGGTAGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGGCGACATCCAAGACGAGGACAACAAGGGCACAACCGCCACCGACGG
GGAGAGGGTGGAAAAAAAAAAGAAGAAGCGGAAGAGGAAGTCCAAGATTC
CTAAGCCCACCGCGGCCTTGACGACAGCCGAAGCGCAATCAACCTACCTG
TGGGAGCGCTACGTGAACTTGCTCAACGTCTCGCCGCTTGACGCTGACGT
AAATCGTTTCCCCCCCACCTGCTTCACACTTCCCTCCTCCTCGTCGTCCT
CTGGCTTCACTGCCCTAAAAAGAGTGAAAGGGAAGCAACCCGCGAAGCCA
ACGGGCCACGCCCAAACCTCCGACAGTCACCCTGGCAAGGGAGACGCAAA
CGTCACCGATTTTCTCCAGCAAGCCTTCCCACAGCTTCAAAAAATCGCTT
CTGACAAATCCCAACGTGAAATGGCACACCCTTTCGTTGTCCTACTATCT
TCCTCCGCTGTACGAGCGAATGAGCTCGCGAAGGATCTACGGATGAAGCT
CCGGAATCTCAAGACGGCAAAATTGTTTGCGAAACATCTCAAAGTGGACG
CACAGGTCGAAGTGCTTCAGAGTGAGTTTAATGCCTTGGCGGTGGGCACG
CCGAATCGCTTGATCAAATTGTTGGAGATGAATGCGATGAGTTTGGCGCG
ATGCCGGTTGGTGGTGTTGGACAGTAGTTTCAAAGATTCCAAGTCGTTTG
ATTTGTTGACCTTGCCCGGGGTGGCGAAAGACACGGCGTTACTTTTGAGA
GACCATGTCCTGCCAGCTATGACGGCACGCAAGGAGAGAAAAGACGTGAA
CGAGCAGCTAAGGTTGGCTCTGTTTTAGAAATTGGAAGAGGAGGAGGAGG
GAGGGAGGCAGGGAGCGGGAGATGAAGAGGAGGAAGGAATGGGAAGATAA
TCAAAAGCATATTCAATTTAAGGCCACTGGACG
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protein sequence of NO06G01980.1

>NO06G01980.1-protein ID=NO06G01980.1-protein|Name=NO06G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MGDTLDDGFEAYDLEADAEEFADDDEPLIEAGLSKRKAEDWEEGKDKKSK
QQSKKQKQKVQATGGEEEEEGGEVEEEEEEEEEEGDIQDEDNKGTTATDG
ERVEKKKKKRKRKSKIPKPTAALTTAEAQSTYLWERYVNLLNVSPLDADV
NRFPPTCFTLPSSSSSSGFTALKRVKGKQPAKPTGHAQTSDSHPGKGDAN
VTDFLQQAFPQLQKIASDKSQREMAHPFVVLLSSSAVRANELAKDLRMKL
RNLKTAKLFAKHLKVDAQVEVLQSEFNALAVGTPNRLIKLLEMNAMSLAR
CRLVVLDSSFKDSKSFDLLTLPGVAKDTALLLRDHVLPAMTARKERKDVN
EQLRLALF*
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Synonyms
Publications