NO06G01610, NO06G01610 (gene) Nannochloropsis oceanica

Overview
NameNO06G01610
Unique NameNO06G01610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1120
Alignment locationchr6:504610..505729 -

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Properties
Property NameValue
DescriptionThioredoxin domain-containing protein 9
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:504610..505729 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
GO:0045454cell redox homeostasis
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR013766Thioredoxin_domain
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Homology
BLAST of NO06G01610 vs. NCBI_GenBank
Match: POM65973.1 (Thioredoxin-like protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 169.5 bits (428), Expect = 1.700e-38
Identity = 95/182 (52.20%), Postives = 122/182 (67.03%), Query Frame = 0
Query:  116 DEEDDVEDENGL-----DAELKMIREKRMAQLKAQHQEKAENLSKGHGQYREISQDEFLPEVTGSRHVLVHFYHKDFMRCKIMDKHLAILAPAHVEAKFLKINAEKAPFFVGKLQVKILPTIIYFKESIA-EERVQGFEGLTEGMAKG--------------AEDEFPTSVLATKLANLGAI 278
            +EE D +DE  L     D EL+ IR  R+ QLK + +EK   ++KGHG+YREI+QDEFL EVTGS  V VHFYH+DF RCKIMD HL  LA +H+E KFLK+NAEKAPFFV KL +++LPT++ FK+ IA  ERV GF+GLT+   +               + D FPT+ LA KL  +GA+
Sbjct:   84 EEEVDSDDEAMLDELDEDPELERIRAARLKQLKQEFEEKQTLMAKGHGEYREITQDEFLKEVTGSPFVAVHFYHRDFERCKIMDMHLEKLARSHIECKFLKLNAEKAPFFVEKLVIRVLPTVVCFKDGIAFPERVIGFDGLTDDEEEAELANFGSRANHHATSSDNFPTAALAHKLVKIGAL 265          
BLAST of NO06G01610 vs. NCBI_GenBank
Match: XP_009834793.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV75662.1 hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 167.5 bits (423), Expect = 6.600e-38
Identity = 86/138 (62.32%), Postives = 103/138 (74.64%), Query Frame = 0
Query:  128 DAELKMIREKRMAQLKAQHQEKAENLSKGHGQYREISQDEFLPEVTGSRHVLVHFYHKDFMRCKIMDKHLAILAPAHVEAKFLKINAEKAPFFVGKLQVKILPTIIYFKESIAEE-RVQGFEGLTEGMAKGAEDEFPT 265
            D +   +RE R+ QL+ Q++ KAENL+KGHG YREI QDEFL EVT S  VLVHFYH+DF RCK+MD HL  +A  HVE K LKI+AEKAPFFV KL V++LPTII F+  IA + RV GFEGL + +  G EDEFPT
Sbjct:  107 DPDFMRLREVRLKQLQEQYKLKAENLAKGHGDYREILQDEFLKEVTSSARVLVHFYHRDFERCKVMDMHLGRIAKRHVEVKVLKIDAEKAPFFVAKLVVRVLPTIILFENGIANDTRVVGFEGLADDLPLGREDEFPT 244          
BLAST of NO06G01610 vs. NCBI_GenBank
Match: XP_024585090.1 (thioredoxin-like protein [Plasmopara halstedii] >CEG48721.1 thioredoxin-like protein [Plasmopara halstedii])

HSP 1 Score: 163.3 bits (412), Expect = 1.200e-36
Identity = 91/176 (51.70%), Postives = 118/176 (67.05%), Query Frame = 0
Query:  117 EEDDVEDENGL--DAELKMIREKRMAQLKAQHQEKAENLSKGHGQYREISQDEFLPEVTGSRHVLVHFYHKDFMRCKIMDKHLAILAPAHVEAKFLKINAEKAPFFVGKLQVKILPTIIYFKESIA-EERVQGFEGLTEGMAKG------------AEDEFPTSVLATKLANLGAI 278
            + DD E  N L  D EL+ IR  R+ QLK +++E+   L+KGHG++REISQDEFL EVT S  V VHFYH+DF RCKIMD HLA LA +H+E KFLK++AEKAPFF  KL +++LP+I+ F++ +A  ER+ GFEGLT    K             A D FPT+ LA K+  +G I
Sbjct:   90 DSDDEEMLNQLDDDPELERIRTARLKQLKNEYEEQQILLAKGHGEFREISQDEFLKEVTSSPLVAVHFYHRDFERCKIMDMHLAKLARSHIECKFLKLDAEKAPFFAKKLMIRVLPSIVCFRDGVAFSERIIGFEGLTSDDEKAEASNFGSRKTAHANDNFPTAALARKMVEIGVI 265          
BLAST of NO06G01610 vs. NCBI_GenBank
Match: CDW72684.1 (phosducin-like protein 3 isoform 1 [Stylonychia lemnae])

HSP 1 Score: 161.0 bits (406), Expect = 6.200e-36
Identity = 97/212 (45.75%), Postives = 130/212 (61.32%), Query Frame = 0
Query:  109 HKANLLSDEEDDVEDENGLDAELKMIREKRMAQLKAQHQEKAENLSKGHGQYREISQDEFLPEVTGSRHVLVHFYHKDFMRCKIMDKHLAILAPAHVEAKFLKINAEKAPFFVGKLQVKILPTIIYFKESIAEERVQGFEGLTEGMAKGAEDEFPTSVLATKLANLGAIEYTAPPTLEELRKFQLKKTMGAIRAGGGGTCLYDDDEDFNGDI 321
            H+ N    + DD   +   +  ++ IRE+R++Q+K Q+QEK ENL KGHGQY EI +DEFL  VT S+ V+ HFYHKDF RCKI+D HL  +A  HVEA+FL +NAE+APFF+ KLQV++LPT+I F + IA +R+ GFE L      GA D+FP   L  +L   G ++      L +  K Q+      IR GG      D +ED   DI
Sbjct:   60 HQPN--KQDSDDEFFDXXXEKIMRDIREQRLSQMKNQYQEKQENLIKGHGQYTEIKEDEFLANVTKSKFVVCHFYHKDFERCKIVDMHLRNIARNHVEARFLYLNAEQAPFFIKKLQVQVLPTMICFIDGIAVDRIVGFEDL------GARDDFPQISLTRRLIRSGVLK-----PLTKAEKGQIN-----IRRGGN-----DSEEDSGDDI 248          
BLAST of NO06G01610 vs. NCBI_GenBank
Match: GAX94863.1 (thioredoxinlike protein putative [Pythium insidiosum])

HSP 1 Score: 159.5 bits (402), Expect = 1.800e-35
Identity = 83/156 (53.21%), Postives = 109/156 (69.87%), Query Frame = 0
Query:  138 RMAQLKAQHQEKAENLSKGHGQYREISQDEFLPEVTGSRHVLVHFYHKDFMRCKIMDKHLAILAPAHVEAKFLKINAEKAPFFVGKLQVKILPTIIYFKESIA-EERVQGFEGL-------------TEGMAKGAEDEFPTSVLATKLANLGAIEY 280
            R+AQL+AQH+++ E L+KGHG+YREI+QDEFL EVT S  VLVHFYH DF RCKIMD HL  LA  H+E KFLK+NAEKAPFFV KL+V++LPT++ F++ +A  +R+ GF+GL             T    K   D FPT  LA +L  +G +++
Sbjct:  111 RLAQLQAQHKKQQELLAKGHGEYREITQDEFLKEVTSSPLVLVHFYHNDFERCKIMDMHLNRLAKHHIECKFLKLNAEKAPFFVEKLRVRVLPTVVGFRDGVAFPQRIIGFDGLSADDEDEELSAFGTRASHKKPSDTFPTIALARRLEAIGVLQH 266          
BLAST of NO06G01610 vs. NCBI_GenBank
Match: KUF72698.1 (Phosducin protein 3 [Phytophthora nicotianae] >KUF84053.1 Phosducin protein 3 [Phytophthora nicotianae])

HSP 1 Score: 156.0 bits (393), Expect = 2.000e-34
Identity = 91/187 (48.66%), Postives = 123/187 (65.78%), Query Frame = 0
Query:  115 SDEEDDVEDENGL-----DAELK---MIREKRMAQLKAQHQEKAENLSKGHGQYREISQDEFLPEVTGSRHVLVHFYHKDFMRCKIMDKHLAILAPAHVEAKFLKINAEKAPFFVGKLQVKILPTIIYFKESIA-EERVQGFEGLTEGMAKG--------------AEDEFPTSVLATKLANLGAIE 279
            ++EE D +DE  L     D EL+   +IR  R+ QLK + +EK   ++KGHG+YREI+QDEFL EVTGS  V VHFYH+DF RCKIMD H++ LA +H+E KFLK+NAEKAPFFV KL +++LPT++ FK+ +A  ERV GF+GLTE   +               + D FPT+     LA+  +I+
Sbjct:   85 TEEELDSDDEAMLAELDEDPELERSLLIRAARLKQLKHEFEEKQSLMAKGHGEYREITQDEFLKEVTGSPLVAVHFYHRDFERCKIMDMHMSKLARSHIECKFLKLNAEKAPFFVEKLVIRVLPTVVCFKDGVAFPERVIGFDGLTEDDEEAELANFGSRANHHATSSDNFPTAADENILADWASID 271          
BLAST of NO06G01610 vs. NCBI_GenBank
Match: EJY73770.1 (hypothetical protein OXYTRI_04981 (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 155.6 bits (392), Expect = 2.600e-34
Identity = 93/206 (45.15%), Postives = 125/206 (60.68%), Query Frame = 0
Query:  115 SDEEDDVEDENGLDAELKMIREKRMAQLKAQHQEKAENLSKGHGQYREISQDEFLPEVTGSRHVLVHFYHKDFMRCKIMDKHLAILAPAHVEAKFLKINAEKAPFFVGKLQVKILPTIIYFKESIAEERVQGFEGLTEGMAKGAEDEFPTSVLATKLANLGAIEYTAPPTLEELRKFQLKKTMGAIRAGGGGTCLYDDDEDFNGDI 321
            SD+ED+ +DE   +  ++ IR+KR+ Q++ + Q K EN  KGHG Y EI ++EFLP VT S+  L HFYHKDF RCKI+D HL  +A  H EAKF+ INAE APFF+ KLQV++LPTII F + +A +RV GFE L      GA+D+FP   L  +L   G ++      L +  K Q+      ++ G  G    D D D   DI
Sbjct:   69 SDDEDNWDDEE--EKIMREIRDKRLVQMQKEFQTKQENRIKGHGTYTEIKEEEFLPTVTKSKFTLCHFYHKDFERCKIVDMHLRNIASVHTEAKFVYINAEMAPFFIQKLQVQVLPTIICFIDGVAVDRVVGFEDL------GAKDDFPMIALTRRLIRSGVLK-----ALSKAEKGQI-----FVKRGKKG----DSDSDSGDDI 252          
BLAST of NO06G01610 vs. NCBI_GenBank
Match: CCA23852.1 (thioredoxinlike protein putative [Albugo laibachii Nc14] >CCA24036.1 thioredoxinlike protein putative [Albugo laibachii Nc14])

HSP 1 Score: 153.7 bits (387), Expect = 9.900e-34
Identity = 79/142 (55.63%), Postives = 104/142 (73.24%), Query Frame = 0
Query:  144 AQHQEKAENLSKGHGQYREISQDEFLPEVTGSRHVLVHFYHKDFMRCKIMDKHLAILAPAHVEAKFLKINAEKAPFFVGKLQVKILPTIIYFKESIA-EERVQGFEGLTEGMA------KGAE-DEFPTSVLATKLANLGAI 278
            A+H  K + LSKGHG+Y+EISQDEFLP VT S  V+VHFYHK+F RC+IMDKHL  L+P +VE KFLKI+AEKAPFFV +L V++LPT++ F+  +A  ER+ GFEGL +  +      +  E D+FPT  LA +LA +G +
Sbjct:  122 AEHTRKQQLLSKGHGEYQEISQDEFLPNVTSSELVVVHFYHKEFERCEIMDKHLLQLSPQYVECKFLKIDAEKAPFFVERLNVRVLPTLVGFRNGVALPERIVGFEGLVDDSSLPNDSYRAVEADKFPTFALAKRLAGIGVL 263          
BLAST of NO06G01610 vs. NCBI_GenBank
Match: XP_005854521.1 (thioredoxin-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU21838.1 thioredoxin-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 153.3 bits (386), Expect = 1.300e-33
Identity = 72/90 (80.00%), Postives = 80/90 (88.89%), Query Frame = 0
Query:  181 HFYHKDFMRCKIMDKHLAILAPAHVEAKFLKINAEKAPFFVGKLQVKILPTIIYFKESIAEERVQGFEGLTEGMAKGAEDEFPTSVLATK 271
            HFYHKDFMRCKIMDKHLA LAP HVE KFLKINAEKAPFFVGKL VKILPT+I+FK+SIAEER+QGFEGL +G  KG EDEFPT+ +A +
Sbjct:    1 HFYHKDFMRCKIMDKHLASLAPTHVETKFLKINAEKAPFFVGKLHVKILPTVIFFKDSIAEERLQGFEGLADGQPKGEEDEFPTARVAAR 90          
BLAST of NO06G01610 vs. NCBI_GenBank
Match: CCI48144.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 152.5 bits (384), Expect = 2.200e-33
Identity = 77/144 (53.47%), Postives = 103/144 (71.53%), Query Frame = 0
Query:  142 LKAQHQEKAENLSKGHGQYREISQDEFLPEVTGSRHVLVHFYHKDFMRCKIMDKHLAILAPAHVEAKFLKINAEKAPFFVGKLQVKILPTIIYFKESIA-EERVQGFEGLTEGMAKGAE-------DEFPTSVLATKLANLGAI 278
            LKA+H  K + LSKGHG+Y+EI+QDEFLP VT S  V+VHFYH +F RCKIMD+HL  L+  H+E KFLKINAEKAPFFV +L +++LPTI+ F+  +A  ER+ GFEGL +  +   +       D+F T  LA +LA++G +
Sbjct:   90 LKAEHIRKQQLLSKGHGEYQEITQDEFLPNVTSSELVVVHFYHNEFERCKIMDQHLGQLSSKHIECKFLKINAEKAPFFVERLNIRVLPTILGFRNGVAFPERIVGFEGLVDDPSASKDSLRALEADKFSTFALAKRLASIGVL 233          
The following BLAST results are available for this feature:
BLAST of NO06G01610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
POM65973.11.700e-3852.20Thioredoxin-like protein [Phytophthora palmivora v... [more]
XP_009834793.16.600e-3862.32hypothetical protein, variant [Aphanomyces astaci]... [more]
XP_024585090.11.200e-3651.70thioredoxin-like protein [Plasmopara halstedii] >C... [more]
CDW72684.16.200e-3645.75phosducin-like protein 3 isoform 1 [Stylonychia le... [more]
GAX94863.11.800e-3553.21thioredoxinlike protein putative [Pythium insidios... [more]
KUF72698.12.000e-3448.66Phosducin protein 3 [Phytophthora nicotianae] >KUF... [more]
EJY73770.12.600e-3445.15hypothetical protein OXYTRI_04981 (macronuclear) [... [more]
CCA23852.19.900e-3455.63thioredoxinlike protein putative [Albugo laibachii... [more]
XP_005854521.11.300e-3380.00thioredoxin-like protein, partial [Nannochloropsis... [more]
CCI48144.12.200e-3353.47unnamed protein product [Albugo candida][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000293NSK000293Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G01610.1NO06G01610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100072g22gene4333Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G01610.1NO06G01610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G01610 ID=NO06G01610|Name=NO06G01610|organism=Nannochloropsis oceanica|type=gene|length=1120bp
ATGACAAGgtgtgtgatccaaagcgtaggaggccagggctggcttggagc
tcgtgcgcacacacaccgtgctccctgcacacgatttcatgtgctctttt
gtcgccgtcgcatcctcctctcctcccacctcattttcccgcacgcaccc
acgctacagTACGAGCAGCATGGCGAGCAAATTTACGATGGTGGACCCCA
ACAAGGGGGATGACCTTCACCAAATCATGGCGCAAACGGTGAACGACCGG
GTGGGCAAGGCCGTCGAGGAGCTGCAAGAGAAGCACGACAAGCGGGCCGC
AAGTGGAAAGCCTGCGCAGCAAGACGACACCTCAGTGGACGGACCCACGG
GCAGTACGTACCGGCAAGTTGAAGCCCGCGAGCGAGTGCAGCAGCAGAAG
ACCGTGGCGCGATCACGCAAGGCAGAAGAGCAGGCCGTGGCGGCGGCGCG
GGAGGAGGAAATCGTGCAGCAACTGCACAAAGCCAACCTGCTTTCGGACG
AGGAAGACGACGTTGAGGACGAAAATGGGCTAGACGCTGAGTTAAAAATG
ATTCGAGAGAAACGTATGGCGCAGCTCAAGGCACAACATCAGGAGAAGGC
AGAAAATTTGAGCAAGGGCCACGGGCAGTATCGAGAGATCAGTCAGGACG
AGTTCTTACCGGAAGTGACAGGCTCGCGACACGTGCTTGTCCATTTTTAT
CACAAGGACTTTATGCGTTGCAAAATCATGGATAAGCACCTGGCGATTTT
GGCGCCAGCGCATGTGGAAGCGAAGTTCTTGAAGATCAATGCGGAGAAAG
CTCCGTTCTTTGTAGGGAAACTGCAAGTGAAAATTCTGCCAACCATAATT
TATTTCAAGGAGAGCATTGCGGAGGAGCGGGTGCAGGGGTTCGAGGGACT
GACGGAGGGTATGGCGAAAGGGGCAGAGGACGAGTTCCCGACAAGTGTGT
TGGCGACGAAGCTCGCGAACCTTGGCGCGATTGAGTACACGGCGCCGCCG
ACGTTGGAGGAACTGAGGAAATTCCAACTGAAGAAGACAATGGGGGCGAT
TCGCGCGGGTGGTGGAGGGACGTGTTTGTATGATGACGACGAGGATTTTA
ATGGGGATATTTCGGAGTAG
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protein sequence of NO06G01610.1

>NO06G01610.1-protein ID=NO06G01610.1-protein|Name=NO06G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MTSTSSMASKFTMVDPNKGDDLHQIMAQTVNDRVGKAVEELQEKHDKRAA
SGKPAQQDDTSVDGPTGSTYRQVEARERVQQQKTVARSRKAEEQAVAAAR
EEEIVQQLHKANLLSDEEDDVEDENGLDAELKMIREKRMAQLKAQHQEKA
ENLSKGHGQYREISQDEFLPEVTGSRHVLVHFYHKDFMRCKIMDKHLAIL
APAHVEAKFLKINAEKAPFFVGKLQVKILPTIIYFKESIAEERVQGFEGL
TEGMAKGAEDEFPTSVLATKLANLGAIEYTAPPTLEELRKFQLKKTMGAI
RAGGGGTCLYDDDEDFNGDISE*
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Synonyms
Publications