NO06G01610.1, NO06G01610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01610.1
Unique NameNO06G01610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length969
Alignment locationchr6:504610..505729 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:504610..505729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G01610.1 vs.
Match: EWM26185.1 (thioredoxin domain-containing protein 9 [Nannochloropsis gaditana])

HSP 1 Score: 421.4 bits (1082), Expect = 2.500e-114
Identity = 226/319 (70.85%), Postives = 267/319 (83.70%), Query Frame = 0
Query:    7 MASKFTMVDPNKGDDLHQIMAQTVNDRVGKAVEELQEKHDKRAA---SGKPAQQDDTSVDGPTGSTYRQVEARERVQQQKTVARSRKAEEQAVAAAREEEIVQQLHKANLLSDEEDDVEDENGLDAELKMIREKRMAQLKAQHQEKAENLSKGHGQYREISQDEFLPEVTGSRHVLVHFYHKDFMRCKIMDKHLAILAPAHVEAKFLKINAEKAPFFVGKLQVKILPTIIYFKESIAEERVQGFEGLTEGMAKGAEDEFPTSVLATKLANLGAIEYTAPPTLEELRKFQLKKTMGAIRAGGGGTCLYDDDEDFNGDISE 323
            MASKFTMVDP +GDD++Q MAQTVNDR+GKAVEEL++K+D+R A   SG     +DTSVDGPTGS YRQVEAR+R QQ +  AR RK++EQAV AAR+EEIVQ+L +++LLSDEEDD E E+ LD E K+IRE+R+A+LKAQHQEK +N+SKGHGQYREI+QDEFLPEVTGSR VLVHFYHKDFMRCKIMDKHLA LAP HVE KFLKINAEKAPFFVGKL VKILPT+I+FK+SIAEER+QGFEGL +G  KG EDEFPT+ +A +L  L AI+YTAPPTL+ELR+F L +   AIR G   TC  DDDED +G +S+
Sbjct:    1 MASKFTMVDPAQGDDVYQHMAQTVNDRMGKAVEELRQKNDERTAASQSGASMPDEDTSVDGPTGSAYRQVEARKRAQQHRAQARIRKSKEQAVDAARQEEIVQKLQESHLLSDEEDD-EAEDSLDPEFKLIRERRLAELKAQHQEKVDNMSKGHGQYREITQDEFLPEVTGSRRVLVHFYHKDFMRCKIMDKHLASLAPTHVETKFLKINAEKAPFFVGKLHVKILPTVIFFKDSIAEERLQGFEGLADGQPKGEEDEFPTARVAARLGKLEAIDYTAPPTLDELRRFHLSQ-HAAIRGGTATTC--DDDEDLDGCLSD 315          
The following BLAST results are available for this feature:
BLAST of NO06G01610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26185.12.500e-11470.85thioredoxin domain-containing protein 9 [Nannochlo... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01610NO06G01610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01610.1NO06G01610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01610.1.cds1NO06G01610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01610.1.cds2NO06G01610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01610.1 ID=NO06G01610.1|Name=NO06G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=969bp
ATGACAAGTACGAGCAGCATGGCGAGCAAATTTACGATGGTGGACCCCAA
CAAGGGGGATGACCTTCACCAAATCATGGCGCAAACGGTGAACGACCGGG
TGGGCAAGGCCGTCGAGGAGCTGCAAGAGAAGCACGACAAGCGGGCCGCA
AGTGGAAAGCCTGCGCAGCAAGACGACACCTCAGTGGACGGACCCACGGG
CAGTACGTACCGGCAAGTTGAAGCCCGCGAGCGAGTGCAGCAGCAGAAGA
CCGTGGCGCGATCACGCAAGGCAGAAGAGCAGGCCGTGGCGGCGGCGCGG
GAGGAGGAAATCGTGCAGCAACTGCACAAAGCCAACCTGCTTTCGGACGA
GGAAGACGACGTTGAGGACGAAAATGGGCTAGACGCTGAGTTAAAAATGA
TTCGAGAGAAACGTATGGCGCAGCTCAAGGCACAACATCAGGAGAAGGCA
GAAAATTTGAGCAAGGGCCACGGGCAGTATCGAGAGATCAGTCAGGACGA
GTTCTTACCGGAAGTGACAGGCTCGCGACACGTGCTTGTCCATTTTTATC
ACAAGGACTTTATGCGTTGCAAAATCATGGATAAGCACCTGGCGATTTTG
GCGCCAGCGCATGTGGAAGCGAAGTTCTTGAAGATCAATGCGGAGAAAGC
TCCGTTCTTTGTAGGGAAACTGCAAGTGAAAATTCTGCCAACCATAATTT
ATTTCAAGGAGAGCATTGCGGAGGAGCGGGTGCAGGGGTTCGAGGGACTG
ACGGAGGGTATGGCGAAAGGGGCAGAGGACGAGTTCCCGACAAGTGTGTT
GGCGACGAAGCTCGCGAACCTTGGCGCGATTGAGTACACGGCGCCGCCGA
CGTTGGAGGAACTGAGGAAATTCCAACTGAAGAAGACAATGGGGGCGATT
CGCGCGGGTGGTGGAGGGACGTGTTTGTATGATGACGACGAGGATTTTAA
TGGGGATATTTCGGAGTAG
back to top

protein sequence of NO06G01610.1

>NO06G01610.1-protein ID=NO06G01610.1-protein|Name=NO06G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MTSTSSMASKFTMVDPNKGDDLHQIMAQTVNDRVGKAVEELQEKHDKRAA
SGKPAQQDDTSVDGPTGSTYRQVEARERVQQQKTVARSRKAEEQAVAAAR
EEEIVQQLHKANLLSDEEDDVEDENGLDAELKMIREKRMAQLKAQHQEKA
ENLSKGHGQYREISQDEFLPEVTGSRHVLVHFYHKDFMRCKIMDKHLAIL
APAHVEAKFLKINAEKAPFFVGKLQVKILPTIIYFKESIAEERVQGFEGL
TEGMAKGAEDEFPTSVLATKLANLGAIEYTAPPTLEELRKFQLKKTMGAI
RAGGGGTCLYDDDEDFNGDISE*
back to top

mRNA from alignment at chr6:504610..505729-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01610.1 ID=NO06G01610.1|Name=NO06G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1120bp|location=Sequence derived from alignment at chr6:504610..505729- (Nannochloropsis oceanica)
ATGACAAGGTGTGTGATCCAAAGCGTAGGAGGCCAGGGCTGGCTTGGAGC TCGTGCGCACACACACCGTGCTCCCTGCACACGATTTCATGTGCTCTTTT GTCGCCGTCGCATCCTCCTCTCCTCCCACCTCATTTTCCCGCACGCACCC ACGCTACAGTACGAGCAGCATGGCGAGCAAATTTACGATGGTGGACCCCA ACAAGGGGGATGACCTTCACCAAATCATGGCGCAAACGGTGAACGACCGG GTGGGCAAGGCCGTCGAGGAGCTGCAAGAGAAGCACGACAAGCGGGCCGC AAGTGGAAAGCCTGCGCAGCAAGACGACACCTCAGTGGACGGACCCACGG GCAGTACGTACCGGCAAGTTGAAGCCCGCGAGCGAGTGCAGCAGCAGAAG ACCGTGGCGCGATCACGCAAGGCAGAAGAGCAGGCCGTGGCGGCGGCGCG GGAGGAGGAAATCGTGCAGCAACTGCACAAAGCCAACCTGCTTTCGGACG AGGAAGACGACGTTGAGGACGAAAATGGGCTAGACGCTGAGTTAAAAATG ATTCGAGAGAAACGTATGGCGCAGCTCAAGGCACAACATCAGGAGAAGGC AGAAAATTTGAGCAAGGGCCACGGGCAGTATCGAGAGATCAGTCAGGACG AGTTCTTACCGGAAGTGACAGGCTCGCGACACGTGCTTGTCCATTTTTAT CACAAGGACTTTATGCGTTGCAAAATCATGGATAAGCACCTGGCGATTTT GGCGCCAGCGCATGTGGAAGCGAAGTTCTTGAAGATCAATGCGGAGAAAG CTCCGTTCTTTGTAGGGAAACTGCAAGTGAAAATTCTGCCAACCATAATT TATTTCAAGGAGAGCATTGCGGAGGAGCGGGTGCAGGGGTTCGAGGGACT GACGGAGGGTATGGCGAAAGGGGCAGAGGACGAGTTCCCGACAAGTGTGT TGGCGACGAAGCTCGCGAACCTTGGCGCGATTGAGTACACGGCGCCGCCG ACGTTGGAGGAACTGAGGAAATTCCAACTGAAGAAGACAATGGGGGCGAT TCGCGCGGGTGGTGGAGGGACGTGTTTGTATGATGACGACGAGGATTTTA ATGGGGATATTTCGGAGTAG
back to top

Coding sequence (CDS) from alignment at chr6:504610..505729-

>NO06G01610.1 ID=NO06G01610.1|Name=NO06G01610.1|organism=Nannochloropsis oceanica|type=CDS|length=969bp|location=Sequence derived from alignment at chr6:504610..505729- (Nannochloropsis oceanica)
ATGACAAGTACGAGCAGCATGGCGAGCAAATTTACGATGGTGGACCCCAA
CAAGGGGGATGACCTTCACCAAATCATGGCGCAAACGGTGAACGACCGGG
TGGGCAAGGCCGTCGAGGAGCTGCAAGAGAAGCACGACAAGCGGGCCGCA
AGTGGAAAGCCTGCGCAGCAAGACGACACCTCAGTGGACGGACCCACGGG
CAGTACGTACCGGCAAGTTGAAGCCCGCGAGCGAGTGCAGCAGCAGAAGA
CCGTGGCGCGATCACGCAAGGCAGAAGAGCAGGCCGTGGCGGCGGCGCGG
GAGGAGGAAATCGTGCAGCAACTGCACAAAGCCAACCTGCTTTCGGACGA
GGAAGACGACGTTGAGGACGAAAATGGGCTAGACGCTGAGTTAAAAATGA
TTCGAGAGAAACGTATGGCGCAGCTCAAGGCACAACATCAGGAGAAGGCA
GAAAATTTGAGCAAGGGCCACGGGCAGTATCGAGAGATCAGTCAGGACGA
GTTCTTACCGGAAGTGACAGGCTCGCGACACGTGCTTGTCCATTTTTATC
ACAAGGACTTTATGCGTTGCAAAATCATGGATAAGCACCTGGCGATTTTG
GCGCCAGCGCATGTGGAAGCGAAGTTCTTGAAGATCAATGCGGAGAAAGC
TCCGTTCTTTGTAGGGAAACTGCAAGTGAAAATTCTGCCAACCATAATTT
ATTTCAAGGAGAGCATTGCGGAGGAGCGGGTGCAGGGGTTCGAGGGACTG
ACGGAGGGTATGGCGAAAGGGGCAGAGGACGAGTTCCCGACAAGTGTGTT
GGCGACGAAGCTCGCGAACCTTGGCGCGATTGAGTACACGGCGCCGCCGA
CGTTGGAGGAACTGAGGAAATTCCAACTGAAGAAGACAATGGGGGCGATT
CGCGCGGGTGGTGGAGGGACGTGTTTGTATGATGACGACGAGGATTTTAA
TGGGGATATTTCGGAGTAG
back to top
Synonyms
Publications