NO06G01340, NO06G01340 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G01340
Unique Name	NO06G01340
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1666
Alignment location	chr6:430781..432446 -

Link to JBrowse

Properties


Property Name	Value
Description	Peptidylprolyl isomerase

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:430781..432446 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008978	HSP20-like_chaperone
IPR023566	PPIase_FKBP
IPR001179	PPIase_FKBP_dom
IPR007052	CS_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006464	cellular protein modification process

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

Homology

[Close]

BLAST of NO06G01340 vs. NCBI_GenBank
Match: XP_012830009.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Erythranthe guttata] >XP_012830010.1 PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Erythranthe guttata] >XP_012830011.1 PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Erythranthe guttata] >EYU43449.1 hypothetical protein MIMGU_mgv1a014421mg [Erythranthe guttata] >EYU43450.1 hypothetical protein MIMGU_mgv1a014421mg [Erythranthe guttata] >EYU43451.1 hypothetical protein MIMGU_mgv1a014421mg [Erythranthe guttata])

HSP 1 Score: 88.2 bits (217), Expect = 7.200e-14
Identity = 56/150 (37.33%), Postives = 80/150 (53.33%), Query Frame = 0

Query:   91 DDEPVDLSGDGGVMKRVIRHGFGYKQESPPPHAYCKIAFV----MKTSTGQVIADRMKDPMEFMLGLEQPEVIPGWELAVASMKPNEVAEITCSPDYAFGAAEGYEDKIPPGATIITRLRLVDWRSLKGAGSTNVEDTR---DLTKKWRE 234
            D   +DLSGDGGV+K +IR     K ++  P     +  V    +   TG+V     +D   F   L    VI  W++A+ +MK  EVA+ITC+PDY +G+A G    IPP +T+I  + LVD R  +G+  ++  D R   D  KK RE
Sbjct:    3 DAAAMDLSGDGGVLKTIIRRA---KPDAVVPSDSLPLLDVHYEGILAETGEVFDTTHEDNTIFTFELGTGSVIKAWDIALKTMKVGEVAKITCTPDYGYGSA-GSPPDIPPNSTLIFEVELVDCRPQRGSTLSSASDERSRLDELKKQRE 148

[Close]

BLAST of NO06G01340 vs. NCBI_GenBank
Match: CDP00118.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 88.2 bits (217), Expect = 7.200e-14
Identity = 48/137 (35.04%), Postives = 77/137 (56.20%), Query Frame = 0

Query:   93 EPVDLSGDGGVMKRVIRHGFGYKQESPPPHAYCKIAFV----MKTSTGQVIADRMKDPMEFMLGLEQPEVIPGWELAVASMKPNEVAEITCSPDYAFGAAEGYEDKIPPGATIITRLRLVDWRSLKGAGSTNVEDTR 226
            + +DL+GDGGV+K ++RH    K ++  P     +  V    +   TG+V     +D   F   + +  VI  W++A+ +MK  EVA+ITC P+YA+G+A G   ++PP A +I  + LV  R  +GA  ++V D R
Sbjct:    3 DTIDLTGDGGVLKTIVRHA---KPDAIAPSESLPLVDVHYEGILADTGEVFDTTREDNTVFTFEVGKGSVIKAWDVALRTMKVGEVAKITCMPEYAYGSA-GSPPEVPPDAILIFEVELVTCRPRRGASLSSVSDER 135

[Close]

BLAST of NO06G01340 vs. NCBI_GenBank
Match: XP_011002647.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Populus euphratica])

HSP 1 Score: 88.2 bits (217), Expect = 7.200e-14
Identity = 52/137 (37.96%), Postives = 75/137 (54.74%), Query Frame = 0

Query:   93 EPVDLSGDGGVMKRVIRHGFGYKQESPPPHAYCKIAFVM----KTSTGQVIADRMKDPMEFMLGLEQPEVIPGWELAVASMKPNEVAEITCSPDYAFGAAEGYEDKIPPGATIITRLRLVDWRSLKGAGSTNVEDTR 226
            + +DLSGDGGV+K ++R     K ++  P     +  V        TG+V      D   F   L +  VI  WE+AV +MK  EVA+ITC P++A+G+A G    IPPGAT+I  + LV  +  KG+  T+V + R
Sbjct:    3 DSIDLSGDGGVVKTILRKA---KADALCPSDDLPLVDVQYEGTLAETGEVFDTTRMDNTVFSFELGKGSVIQAWEIAVKTMKVGEVAKITCKPEFAYGSA-GSPPDIPPGATLIFEVELVACKPRKGSSVTSVSEER 135

[Close]

BLAST of NO06G01340 vs. NCBI_GenBank
Match: KVI09839.1 (Peptidyl-prolyl cis-trans isomerase, FKBP-type [Cynara cardunculus var. scolymus])

HSP 1 Score: 88.2 bits (217), Expect = 7.200e-14
Identity = 50/133 (37.59%), Postives = 72/133 (54.14%), Query Frame = 0

Query:   93 EPVDLSGDGGVMKRVIRHGFGYKQESPPPHAYCKIAFVMKTSTGQVIADRMKDPMEFMLGLEQPEVIPGWELAVASMKPNEVAEITCSPDYAFGAAEGYEDKIPPGATIITRLRLVDWRSLKGAGSTNVEDTR 226
            + +DL+GDGGVMK ++R     K E+  P     +       TG+V     +D   F   L +  VI  W++A+ +MK  EVA+ITC  DYA+G+A G   +IPP AT+I  + LV  R  KG+   +  D R
Sbjct:    3 DAIDLTGDGGVMKTIVRRA---KPEAIVPSDNLPLLDGTLAETGEVFDTTHEDNTVFTFELGKGTVIKAWDVALRTMKVGEVAKITCKSDYAYGSA-GSPPEIPPDATLIFEVELVACRPRKGSSLASASDER 131

[Close]

BLAST of NO06G01340 vs. NCBI_GenBank
Match: XP_017237906.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Daucus carota subsp. sativus] >KZN01714.1 hypothetical protein DCAR_010468 [Daucus carota subsp. sativus])

HSP 1 Score: 88.2 bits (217), Expect = 7.200e-14
Identity = 54/146 (36.99%), Postives = 78/146 (53.42%), Query Frame = 0

Query:   95 VDLSGDGGVMKRVIRHGFGYKQESPPPHAYCKIAFV----MKTSTGQVIADRMKDPMEFMLGLEQPEVIPGWELAVASMKPNEVAEITCSPDYAFGAAEGYEDKIPPGATIITRLRLVDWRSLKGAGSTNVEDTR---DLTKKWRE 234
            +DL+GDGGV+K ++R     K ++  P     +  V        TG+V     +D   F   + Q  VI  W++A+ +MK  E+A+ITC PDYA+G+A G    IPP AT+I  + LV  R  KG+  ++  D R   D  KK RE
Sbjct:    5 IDLTGDGGVVKTIVRRA---KADAITPSESLPLVDVHYEGTLAETGEVFDSTHEDNTIFTFEVGQGTVIKAWDVALKTMKVGEIAKITCQPDYAYGSA-GSPPDIPPNATLIFEVELVACRPRKGSSLSSASDERARLDELKKQRE 146

[Close]

BLAST of NO06G01340 vs. NCBI_GenBank
Match: XP_016552531.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Capsicum annuum] >XP_016552532.1 PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Capsicum annuum] >XP_016552533.1 PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Capsicum annuum] >PHT80853.1 Peptidyl-prolyl cis-trans isomerase FKBP20-1 [Capsicum annuum])

HSP 1 Score: 87.8 bits (216), Expect = 9.400e-14
Identity = 49/137 (35.77%), Postives = 75/137 (54.74%), Query Frame = 0

Query:   93 EPVDLSGDGGVMKRVIRHGFGYKQESPPPHAYCKIAFV----MKTSTGQVIADRMKDPMEFMLGLEQPEVIPGWELAVASMKPNEVAEITCSPDYAFGAAEGYEDKIPPGATIITRLRLVDWRSLKGAGSTNVEDTR 226
            + +DL+GDGGVMK++++     K ++  P     +  V        TG+V     +D   F   +    VI  W++A+ +MK  EVA ITC P+YA+G+A G    IPPGAT++  + LV  R  KG+  ++V D R
Sbjct:    3 DAIDLTGDGGVMKKIVQRS---KPDAIAPSESLPLVDVHYEGTLADTGEVFDTTREDNTIFSFEIGSGSVIKAWDVALRTMKVGEVAVITCKPEYAYGSA-GSPPDIPPGATLVFEVELVACRPRKGSSVSSVSDER 135

[Close]

BLAST of NO06G01340 vs. NCBI_GenBank
Match: OWM70041.1 (hypothetical protein CDL15_Pgr025890 [Punica granatum])

HSP 1 Score: 87.8 bits (216), Expect = 9.400e-14
Identity = 48/139 (34.53%), Postives = 75/139 (53.96%), Query Frame = 0

Query:   91 DDEPVDLSGDGGVMKRVIRHGFGYKQESPPPHAYCKIAFV----MKTSTGQVIADRMKDPMEFMLGLEQPEVIPGWELAVASMKPNEVAEITCSPDYAFGAAEGYEDKIPPGATIITRLRLVDWRSLKGAGSTNVEDTR 226
            +D+ +DL+GDGGV+K+++R     K +   P     +  V    +   TG+V     +D   F   +    VI  W++AV +MK  EVA+ITC P+YA+G A G    IPP AT+I  + L   +  KG+  ++V + R
Sbjct:    2 EDDAIDLTGDGGVLKKIVRRA---KPDGVSPSESLPLVDVHYEGVLAETGEVFDTTREDNTVFSFEVGDGSVISAWDIAVKTMKVGEVAKITCKPEYAYGVA-GSPPDIPPNATLIFEVELAACKPRKGSSLSSVNEER 136

[Close]

BLAST of NO06G01340 vs. NCBI_GenBank
Match: PHT54375.1 (Peptidyl-prolyl cis-trans isomerase FKBP4 [Capsicum baccatum])

HSP 1 Score: 87.8 bits (216), Expect = 9.400e-14
Identity = 49/137 (35.77%), Postives = 75/137 (54.74%), Query Frame = 0

Query:   93 EPVDLSGDGGVMKRVIRHGFGYKQESPPPHAYCKIAFV----MKTSTGQVIADRMKDPMEFMLGLEQPEVIPGWELAVASMKPNEVAEITCSPDYAFGAAEGYEDKIPPGATIITRLRLVDWRSLKGAGSTNVEDTR 226
            + +DL+GDGGVMK++++     K ++  P     +  V        TG+V     +D   F   +    VI  W++A+ +MK  EVA ITC P+YA+G+A G    IPPGAT++  + LV  R  KG+  ++V D R
Sbjct:    3 DAIDLTGDGGVMKKIVQRS---KPDAIAPSESLPLVDVHYEGTLADTGEVFDTTREDNTIFSFEIGSGSVIKAWDVALRTMKVGEVAVITCKPEYAYGSA-GSPPDIPPGATLVFEVELVACRPRKGSSVSSVSDER 135

[Close]

BLAST of NO06G01340 vs. NCBI_GenBank
Match: PHU16963.1 (Peptidyl-prolyl cis-trans isomerase FKBP4 [Capsicum chinense])

HSP 1 Score: 87.8 bits (216), Expect = 9.400e-14
Identity = 49/137 (35.77%), Postives = 75/137 (54.74%), Query Frame = 0

Query:   93 EPVDLSGDGGVMKRVIRHGFGYKQESPPPHAYCKIAFV----MKTSTGQVIADRMKDPMEFMLGLEQPEVIPGWELAVASMKPNEVAEITCSPDYAFGAAEGYEDKIPPGATIITRLRLVDWRSLKGAGSTNVEDTR 226
            + +DL+GDGGVMK++++     K ++  P     +  V        TG+V     +D   F   +    VI  W++A+ +MK  EVA ITC P+YA+G+A G    IPPGAT++  + LV  R  KG+  ++V D R
Sbjct:   25 DAIDLTGDGGVMKKIVQRS---KPDAIAPSESLPLVDVYYEGTLADTGEVFDTTREDNTIFSFEIGSGSVIKAWDVALRTMKVGEVAVITCKPEYAYGSA-GSPPDIPPGATLVFEVELVACRPRKGSSVSSVSDER 157

[Close]

BLAST of NO06G01340 vs. NCBI_GenBank
Match: PNX92253.1 (peptidyl-prolyl cis-trans isomerase fkbp20-1-like protein [Trifolium pratense])

HSP 1 Score: 87.8 bits (216), Expect = 9.400e-14
Identity = 53/156 (33.97%), Postives = 81/156 (51.92%), Query Frame = 0

Query:   93 EPVDLSGDGGVMKRVIRHGFGYKQESPPPHAYCKIAFV----MKTSTGQVIADRMKDPMEFMLGLEQPEVIPGWELAVASMKPNEVAEITCSPDYAFGAAEGYEDKIPPGATIITRLRLVDWRSLKGAGSTNVEDTRDLTKKWREEIDQGTSPMTE 245
            + +DLSGDGGV+K ++R     K ++  P     +  V        TG+V     +D   F   L +  VI  W++AV +MK  E+A+ITC PDYA+G+A G    IPP AT++  + LV  R  KG+ + +V + R   +     + +G    TE
Sbjct:    3 DAIDLSGDGGVIKTIVRKS---KSDAVAPTEDFPVVDVHYEGTLADTGEVFDTTHEDNTIFSFELGKGSVIKAWDIAVKTMKVGEIAKITCKPDYAYGSA-GSPPDIPPDATLVFEVELVACRPRKGSTTGSVSEERARLETLDGSVHEGKLNQTE 154

The following BLAST results are available for this feature:

BLAST of NO06G01340 vs. NCBI_GenBank

BLAST of NO06G01340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_012830009.1	7.200e-14	37.33	PREDICTED: peptidyl-prolyl cis-trans isomerase FKB...	[more]
CDP00118.1	7.200e-14	35.04	unnamed protein product [Coffea canephora]	[more]
XP_011002647.1	7.200e-14	37.96	PREDICTED: peptidyl-prolyl cis-trans isomerase FKB...	[more]
KVI09839.1	7.200e-14	37.59	Peptidyl-prolyl cis-trans isomerase, FKBP-type [Cy...	[more]
XP_017237906.1	7.200e-14	36.99	PREDICTED: peptidyl-prolyl cis-trans isomerase FKB...	[more]
XP_016552531.1	9.400e-14	35.77	PREDICTED: peptidyl-prolyl cis-trans isomerase FKB...	[more]
OWM70041.1	9.400e-14	34.53	hypothetical protein CDL15_Pgr025890 [Punica grana...	[more]
PHT54375.1	9.400e-14	35.77	Peptidyl-prolyl cis-trans isomerase FKBP4 [Capsicu...	[more]
PHU16963.1	9.400e-14	35.77	Peptidyl-prolyl cis-trans isomerase FKBP4 [Capsicu...	[more]
PNX92253.1	9.400e-14	33.97	peptidyl-prolyl cis-trans isomerase fkbp20-1-like ...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL091	nonsL091	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL089	nonsL089	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR147	ngnoR147	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR145	ngnoR145	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO06G01340.1	NO06G01340.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
Naga_100121g9	gene4359	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO06G01340.1	NO06G01340.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO06G01340 ID=NO06G01340|Name=NO06G01340|organism=Nannochloropsis oceanica|type=gene|length=1666bp
ATGCCTGGCCCACTTGAGAGACGACCTCCTCAACAGCAGCAGCTACAGCA
GCTGCCCATGCCGCATACACCACGCAGCATCCACCTTCTATTTCTCGCCG
CCATTGCCGCCATACCTCTCCTTTCCACGCCAGTCCAGGCCTTCATGCCC
GCCGCTACACCCGCACCACCATCATTACGCCACGAGCGACCCCTTCCGTA
TCTACCCTCCTCAACAGCCACGACATTACGCTCCTCCACGGGCTCCGGCT
GGCGTGGCGGCCCCCGACCAGATGATGAGCCCGTGGACCTGTCGGGGGAT
GGTGGGGTCATGAAACGCGTCATTCGCCACGGGTTTGGGTACAAGCAAGA
GAGTCCTCCCCCACACGCGTATTGCAAGATTGCCTTTGTTATGAAGACAT
CAACTGGGCAAGTGATAGCGGATCGCATGAAAGACCCTATGGAATTTATG
CTGgtacgtctctttcccccctcccctttttcgtttcatttcttccctgg
gaaatgtgaaattggagggcggagggcaatcactgcatgcaaaatctcaa
taaacgtttctcctttgactacatcacgtagGGCCTAGAACAGCCCGAAG
TCATTCCCGGATGGGAGCTGGCAGTGGCTAGCATGAAGCCCAACGAGGTG
GCTGAGATCACTTGCTCGCCCGATTACGCGTTTGGTGCTGCTGAGGGATA
CGAGGACAAAATTCCCCCTGGTGCAACAATTATTACCAGgtgagtgaaaa
agggagggactgaagaagtgaagtgagtgaatggatgaggtcacttatat
cccaaaataagtatcaactcccgtacccgatctctcctcagtcacactct
cgcctcccctttctttcttcccttcctcctttccccctccctctcttatt
gctcagGTTGCGATTGGTAGACTGGCGTTCCTTGAAAGGTGCAGGGTCAA
CAAACGTGGAAGATACGCGGGACCTGACCAAGAAATGGAGGGAAGAGATC
GATCAAGGTACTTCCCCTATGACTGAATGGGCGGCGCCTCCGACGACGAA
AGGGAGGAGTGGAGGGAAGGAGGGAGGAAGGGTTGAAGAAGGGGCGAATG
TCAGTAGTGGGGGGCCCTTAGCCGATGCCCAGGCAGCAATGGAGAAGCAA
CAGGAAAAAGAACAACACCAGCAGCAGCGACAGGCTTCCTCTTCTTCCTC
CTCGATAGATAAAGAGTTTTCACCTATGTCTTCTCCGCGAGTCGAAGCCA
TGCCTGAGGATCTCAATAAGGGGATGAAAGTAGACGTGGATGATCCCAGT
GTCCAACAAAAATTGAATAAAAACCAAGTGGTCATCGGAACGGCACCCCA
GTACAAATGGAAGGAGCGCGCAGGGTTTTTAGAGTTGGTGGTGCCAGTGC
CTGAAGAGGTGAAAAAGGAGGATGTCCTTGTACATTTGACCAATCGTGTA
TTGATGGTAGGCTTTAAGACGCCAGAAAAGAAGGAGAAGGAGCAGTGGGT
AGTGGGCGGGGATTTGTTTGGTCCAATAGAACTTGCCGAGTCATTTTGGG
TGTTAAGCAAGGACTACACAGATGAGCTCACGGAGGGGAAGACGTGCATT
GAGGTGAGGTTGGAGAAGAAGGAGCCGATGAAAAGGATTTGGAGCACGGT
ATTCAAAGACCAATAA

protein sequence of NO06G01340.1

>NO06G01340.1-protein ID=NO06G01340.1-protein|Name=NO06G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MPGPLERRPPQQQQLQQLPMPHTPRSIHLLFLAAIAAIPLLSTPVQAFMP
AATPAPPSLRHERPLPYLPSSTATTLRSSTGSGWRGGPRPDDEPVDLSGD
GGVMKRVIRHGFGYKQESPPPHAYCKIAFVMKTSTGQVIADRMKDPMEFM
LGLEQPEVIPGWELAVASMKPNEVAEITCSPDYAFGAAEGYEDKIPPGAT
IITRLRLVDWRSLKGAGSTNVEDTRDLTKKWREEIDQGTSPMTEWAAPPT
TKGRSGGKEGGRVEEGANVSSGGPLADAQAAMEKQQEKEQHQQQRQASSS
SSSIDKEFSPMSSPRVEAMPEDLNKGMKVDVDDPSVQQKLNKNQVVIGTA
PQYKWKERAGFLELVVPVPEEVKKEDVLVHLTNRVLMVGFKTPEKKEKEQ
WVVGGDLFGPIELAESFWVLSKDYTDELTEGKTCIEVRLEKKEPMKRIWS
TVFKDQ*

Synonyms

Publications