NO06G01340.1, NO06G01340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01340.1
Unique NameNO06G01340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1371
Alignment locationchr6:430781..432446 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:430781..432446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G01340.1 vs.
Match: EWM26168.1 (Peptidyl-prolyl cis-trans isomerase, FKBP-type [Nannochloropsis gaditana])

HSP 1 Score: 573.2 bits (1476), Expect = 7.400e-160
Identity = 286/398 (71.86%), Postives = 331/398 (83.17%), Query Frame = 0 
Query:   59 LRHERPLPYLPSSTATTLRSSTGSGWRGGPRPDDEPVDLSGDGGVMKRVIRHGFGYKQESPPPHAYCKIAFVMKTSTGQVIADRMKDPMEFMLGLEQPEVIPGWELAVASMKPNEVAEITCSPDYAFGAAEGYEDKIPPGATIITRLRLVDWRSLKGAGSTNVEDTRDLTKKWREEIDQGTSPMTEWAAPPTTKGRSGGKEGGRVEEGANVSSGGPLADAQAAMEKQQEKEQHQQQRQASSSSSSIDKEFSPMSSPRVEAMPEDLNKGMKVDVDDPSVQQKLNKNQVVIGTAPQYKWKERAGFLELVVPVPEEVKKEDVLVHLTNRVLMVGFKTPEKKEKEQWVVGGDLFGPIELAESFWVLSKDYTDELTEGKTCIEVRLEKKEPMKRIWSTVFKDQ 457
            L H  P P + S     + S+  SGWR GPRP DEPVDLSGDGGV+K V+R G+GY Q++PPPH+YCK+AFVMKTSTGQ+IA+RMK PMEFMLGL  PEVI GWE+AVA+MKPNEVAEITCSP+YAFG+AEGY+DKIPPGA I+TRL+L++WR+L+GAGST+VEDTRDLTKKWREEID+GTSPMT WAAPPT +  S G+    V    N    GPLA+A+AAMEK+Q +E+ QQ          ID  FSP S+PRVEA+PED NKGMKVD+DD +++ KLN NQVVIGTAPQYKWKERAG++E+VVPVPEEVKKEDVLVHLTNRVL VGFKTPE   KE W++GGDLFGPIEL  SFWVLSKDYTDELTEGKTC+EVRLEKKEPM+RIWSTVFKDQ
Sbjct:   76 LVHSPPSPLISSP----IMSAMNSGWRSGPRPSDEPVDLSGDGGVLKTVLRPGYGYNQQTPPPHSYCKVAFVMKTSTGQLIANRMKKPMEFMLGLANPEVIRGWEMAVATMKPNEVAEITCSPEYAFGSAEGYQDKIPPGAIIVTRLQLLNWRTLQGAGSTDVEDTRDLTKKWREEIDEGTSPMTTWAAPPTVRKDSIGEATAEVNR-ENGGGSGPLAEAKAAMEKEQREEEQQQ-------GEGID-GFSPPSTPRVEAIPEDANKGMKVDIDDMAMKNKLNPNQVVIGTAPQYKWKERAGYMEVVVPVPEEVKKEDVLVHLTNRVLTVGFKTPE--NKESWIIGGDLFGPIELDSSFWVLSKDYTDELTEGKTCVEVRLEKKEPMRRIWSTVFKDQ 458
The following BLAST results are available for this feature:
BLAST of NO06G01340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26168.17.400e-16071.86Peptidyl-prolyl cis-trans isomerase, FKBP-type [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01340NO06G01340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01340.1NO06G01340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01340.1.cds1NO06G01340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01340.1.cds2NO06G01340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01340.1.cds3NO06G01340.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01340.1 ID=NO06G01340.1|Name=NO06G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1371bp
ATGCCTGGCCCACTTGAGAGACGACCTCCTCAACAGCAGCAGCTACAGCA
GCTGCCCATGCCGCATACACCACGCAGCATCCACCTTCTATTTCTCGCCG
CCATTGCCGCCATACCTCTCCTTTCCACGCCAGTCCAGGCCTTCATGCCC
GCCGCTACACCCGCACCACCATCATTACGCCACGAGCGACCCCTTCCGTA
TCTACCCTCCTCAACAGCCACGACATTACGCTCCTCCACGGGCTCCGGCT
GGCGTGGCGGCCCCCGACCAGATGATGAGCCCGTGGACCTGTCGGGGGAT
GGTGGGGTCATGAAACGCGTCATTCGCCACGGGTTTGGGTACAAGCAAGA
GAGTCCTCCCCCACACGCGTATTGCAAGATTGCCTTTGTTATGAAGACAT
CAACTGGGCAAGTGATAGCGGATCGCATGAAAGACCCTATGGAATTTATG
CTGGGCCTAGAACAGCCCGAAGTCATTCCCGGATGGGAGCTGGCAGTGGC
TAGCATGAAGCCCAACGAGGTGGCTGAGATCACTTGCTCGCCCGATTACG
CGTTTGGTGCTGCTGAGGGATACGAGGACAAAATTCCCCCTGGTGCAACA
ATTATTACCAGGTTGCGATTGGTAGACTGGCGTTCCTTGAAAGGTGCAGG
GTCAACAAACGTGGAAGATACGCGGGACCTGACCAAGAAATGGAGGGAAG
AGATCGATCAAGGTACTTCCCCTATGACTGAATGGGCGGCGCCTCCGACG
ACGAAAGGGAGGAGTGGAGGGAAGGAGGGAGGAAGGGTTGAAGAAGGGGC
GAATGTCAGTAGTGGGGGGCCCTTAGCCGATGCCCAGGCAGCAATGGAGA
AGCAACAGGAAAAAGAACAACACCAGCAGCAGCGACAGGCTTCCTCTTCT
TCCTCCTCGATAGATAAAGAGTTTTCACCTATGTCTTCTCCGCGAGTCGA
AGCCATGCCTGAGGATCTCAATAAGGGGATGAAAGTAGACGTGGATGATC
CCAGTGTCCAACAAAAATTGAATAAAAACCAAGTGGTCATCGGAACGGCA
CCCCAGTACAAATGGAAGGAGCGCGCAGGGTTTTTAGAGTTGGTGGTGCC
AGTGCCTGAAGAGGTGAAAAAGGAGGATGTCCTTGTACATTTGACCAATC
GTGTATTGATGGTAGGCTTTAAGACGCCAGAAAAGAAGGAGAAGGAGCAG
TGGGTAGTGGGCGGGGATTTGTTTGGTCCAATAGAACTTGCCGAGTCATT
TTGGGTGTTAAGCAAGGACTACACAGATGAGCTCACGGAGGGGAAGACGT
GCATTGAGGTGAGGTTGGAGAAGAAGGAGCCGATGAAAAGGATTTGGAGC
ACGGTATTCAAAGACCAATAA
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protein sequence of NO06G01340.1

>NO06G01340.1-protein ID=NO06G01340.1-protein|Name=NO06G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MPGPLERRPPQQQQLQQLPMPHTPRSIHLLFLAAIAAIPLLSTPVQAFMP
AATPAPPSLRHERPLPYLPSSTATTLRSSTGSGWRGGPRPDDEPVDLSGD
GGVMKRVIRHGFGYKQESPPPHAYCKIAFVMKTSTGQVIADRMKDPMEFM
LGLEQPEVIPGWELAVASMKPNEVAEITCSPDYAFGAAEGYEDKIPPGAT
IITRLRLVDWRSLKGAGSTNVEDTRDLTKKWREEIDQGTSPMTEWAAPPT
TKGRSGGKEGGRVEEGANVSSGGPLADAQAAMEKQQEKEQHQQQRQASSS
SSSIDKEFSPMSSPRVEAMPEDLNKGMKVDVDDPSVQQKLNKNQVVIGTA
PQYKWKERAGFLELVVPVPEEVKKEDVLVHLTNRVLMVGFKTPEKKEKEQ
WVVGGDLFGPIELAESFWVLSKDYTDELTEGKTCIEVRLEKKEPMKRIWS
TVFKDQ*
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mRNA from alignment at chr6:430781..432446-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01340.1 ID=NO06G01340.1|Name=NO06G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1666bp|location=Sequence derived from alignment at chr6:430781..432446- (Nannochloropsis oceanica)
ATGCCTGGCCCACTTGAGAGACGACCTCCTCAACAGCAGCAGCTACAGCA
GCTGCCCATGCCGCATACACCACGCAGCATCCACCTTCTATTTCTCGCCG
CCATTGCCGCCATACCTCTCCTTTCCACGCCAGTCCAGGCCTTCATGCCC
GCCGCTACACCCGCACCACCATCATTACGCCACGAGCGACCCCTTCCGTA
TCTACCCTCCTCAACAGCCACGACATTACGCTCCTCCACGGGCTCCGGCT
GGCGTGGCGGCCCCCGACCAGATGATGAGCCCGTGGACCTGTCGGGGGAT
GGTGGGGTCATGAAACGCGTCATTCGCCACGGGTTTGGGTACAAGCAAGA
GAGTCCTCCCCCACACGCGTATTGCAAGATTGCCTTTGTTATGAAGACAT
CAACTGGGCAAGTGATAGCGGATCGCATGAAAGACCCTATGGAATTTATG
CTGGTACGTCTCTTTCCCCCCTCCCCTTTTTCGTTTCATTTCTTCCCTGG
GAAATGTGAAATTGGAGGGCGGAGGGCAATCACTGCATGCAAAATCTCAA
TAAACGTTTCTCCTTTGACTACATCACGTAGGGCCTAGAACAGCCCGAAG
TCATTCCCGGATGGGAGCTGGCAGTGGCTAGCATGAAGCCCAACGAGGTG
GCTGAGATCACTTGCTCGCCCGATTACGCGTTTGGTGCTGCTGAGGGATA
CGAGGACAAAATTCCCCCTGGTGCAACAATTATTACCAGGTGAGTGAAAA
AGGGAGGGACTGAAGAAGTGAAGTGAGTGAATGGATGAGGTCACTTATAT
CCCAAAATAAGTATCAACTCCCGTACCCGATCTCTCCTCAGTCACACTCT
CGCCTCCCCTTTCTTTCTTCCCTTCCTCCTTTCCCCCTCCCTCTCTTATT
GCTCAGGTTGCGATTGGTAGACTGGCGTTCCTTGAAAGGTGCAGGGTCAA
CAAACGTGGAAGATACGCGGGACCTGACCAAGAAATGGAGGGAAGAGATC
GATCAAGGTACTTCCCCTATGACTGAATGGGCGGCGCCTCCGACGACGAA
AGGGAGGAGTGGAGGGAAGGAGGGAGGAAGGGTTGAAGAAGGGGCGAATG
TCAGTAGTGGGGGGCCCTTAGCCGATGCCCAGGCAGCAATGGAGAAGCAA
CAGGAAAAAGAACAACACCAGCAGCAGCGACAGGCTTCCTCTTCTTCCTC
CTCGATAGATAAAGAGTTTTCACCTATGTCTTCTCCGCGAGTCGAAGCCA
TGCCTGAGGATCTCAATAAGGGGATGAAAGTAGACGTGGATGATCCCAGT
GTCCAACAAAAATTGAATAAAAACCAAGTGGTCATCGGAACGGCACCCCA
GTACAAATGGAAGGAGCGCGCAGGGTTTTTAGAGTTGGTGGTGCCAGTGC
CTGAAGAGGTGAAAAAGGAGGATGTCCTTGTACATTTGACCAATCGTGTA
TTGATGGTAGGCTTTAAGACGCCAGAAAAGAAGGAGAAGGAGCAGTGGGT
AGTGGGCGGGGATTTGTTTGGTCCAATAGAACTTGCCGAGTCATTTTGGG
TGTTAAGCAAGGACTACACAGATGAGCTCACGGAGGGGAAGACGTGCATT
GAGGTGAGGTTGGAGAAGAAGGAGCCGATGAAAAGGATTTGGAGCACGGT
ATTCAAAGACCAATAA
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Coding sequence (CDS) from alignment at chr6:430781..432446-

>NO06G01340.1 ID=NO06G01340.1|Name=NO06G01340.1|organism=Nannochloropsis oceanica|type=CDS|length=1371bp|location=Sequence derived from alignment at chr6:430781..432446- (Nannochloropsis oceanica)
ATGCCTGGCCCACTTGAGAGACGACCTCCTCAACAGCAGCAGCTACAGCA
GCTGCCCATGCCGCATACACCACGCAGCATCCACCTTCTATTTCTCGCCG
CCATTGCCGCCATACCTCTCCTTTCCACGCCAGTCCAGGCCTTCATGCCC
GCCGCTACACCCGCACCACCATCATTACGCCACGAGCGACCCCTTCCGTA
TCTACCCTCCTCAACAGCCACGACATTACGCTCCTCCACGGGCTCCGGCT
GGCGTGGCGGCCCCCGACCAGATGATGAGCCCGTGGACCTGTCGGGGGAT
GGTGGGGTCATGAAACGCGTCATTCGCCACGGGTTTGGGTACAAGCAAGA
GAGTCCTCCCCCACACGCGTATTGCAAGATTGCCTTTGTTATGAAGACAT
CAACTGGGCAAGTGATAGCGGATCGCATGAAAGACCCTATGGAATTTATG
CTGGGCCTAGAACAGCCCGAAGTCATTCCCGGATGGGAGCTGGCAGTGGC
TAGCATGAAGCCCAACGAGGTGGCTGAGATCACTTGCTCGCCCGATTACG
CGTTTGGTGCTGCTGAGGGATACGAGGACAAAATTCCCCCTGGTGCAACA
ATTATTACCAGGTTGCGATTGGTAGACTGGCGTTCCTTGAAAGGTGCAGG
GTCAACAAACGTGGAAGATACGCGGGACCTGACCAAGAAATGGAGGGAAG
AGATCGATCAAGGTACTTCCCCTATGACTGAATGGGCGGCGCCTCCGACG
ACGAAAGGGAGGAGTGGAGGGAAGGAGGGAGGAAGGGTTGAAGAAGGGGC
GAATGTCAGTAGTGGGGGGCCCTTAGCCGATGCCCAGGCAGCAATGGAGA
AGCAACAGGAAAAAGAACAACACCAGCAGCAGCGACAGGCTTCCTCTTCT
TCCTCCTCGATAGATAAAGAGTTTTCACCTATGTCTTCTCCGCGAGTCGA
AGCCATGCCTGAGGATCTCAATAAGGGGATGAAAGTAGACGTGGATGATC
CCAGTGTCCAACAAAAATTGAATAAAAACCAAGTGGTCATCGGAACGGCA
CCCCAGTACAAATGGAAGGAGCGCGCAGGGTTTTTAGAGTTGGTGGTGCC
AGTGCCTGAAGAGGTGAAAAAGGAGGATGTCCTTGTACATTTGACCAATC
GTGTATTGATGGTAGGCTTTAAGACGCCAGAAAAGAAGGAGAAGGAGCAG
TGGGTAGTGGGCGGGGATTTGTTTGGTCCAATAGAACTTGCCGAGTCATT
TTGGGTGTTAAGCAAGGACTACACAGATGAGCTCACGGAGGGGAAGACGT
GCATTGAGGTGAGGTTGGAGAAGAAGGAGCCGATGAAAAGGATTTGGAGC
ACGGTATTCAAAGACCAATAA
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Synonyms
Publications