NO06G01240, NO06G01240 (gene) Nannochloropsis oceanica

Overview
NameNO06G01240
Unique NameNO06G01240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1229
Alignment locationchr6:396457..397685 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:396457..397685 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025638DUF4336
Homology
BLAST of NO06G01240 vs. NCBI_GenBank
Match: EWM26165.1 (Protein of unknown function DUF4336 [Nannochloropsis gaditana])

HSP 1 Score: 409.1 bits (1050), Expect = 1.400e-110
Identity = 207/320 (64.69%), Postives = 249/320 (77.81%), Query Frame = 0
Query:   16 LLLLLLSLGSAATHSVLALLNHAPSSSLRPGIATSSARMATTTDRASTTARQRFPLLFPPSVRPTSVFFGDKRNKLWTFEQPFITTTNIKSRMSVFKSGSSIVIYSPIAATPECLDMVKQTAGGLPTHIIMQSNAVDHTLFLEGWRKAIPSAQILNISPTKGDLPLLLNPSSSANSTRNVVPLPFQSTTAPIVEAALLDIPPFFQEVVLFHKPSKSILCADAIWRVVSPEFSPNVVAATGWKAIFFVDGVSRFPYWFYFPRRKRAEVSRFVEQVQGWGEIKRCLPGHLDPIPSAGVGEKEGVGEVDVKRVFLDSFDFILR 336
            L+LL ++  SA  H      +    S     +   + +M++  D  ST  RQ+  L FPPSVRPTS+ F D ++K+WTFEQPFITTTNIK+RMSVFK  +SIV+YSPIAATPEC DMV+   GG+PT+IIMQSNA+DHT+FL GWR+A+PSAQILNISP +GDLP +L  SSS   T  ++PLPFQ    PIVEAALLDI PFF+E+VLFHKPSK++LCADAIWRVVSP FSPN+VAATGWK +F V GVSRFPYWFYFPRRKRA+V +FV+QVQ WGEI+RCLPGHLD IP+A VGE++   E  VKR+FL SFDFILR
Sbjct:   18 LVLLFVARASAFLHH---QCHRRRLSRQCAALRARTPKMSSEIDETSTIQRQKLFLPFPPSVRPTSLVFSDAQHKVWTFEQPFITTTNIKTRMSVFKCETSIVMYSPIAATPECCDMVRNIVGGMPTYIIMQSNAIDHTIFLNGWRRAVPSAQILNISPREGDLP-MLKDSSSGGETAIILPLPFQRGNQPIVEAALLDIEPFFREIVLFHKPSKTLLCADAIWRVVSPTFSPNIVAATGWK-LFGVSGVSRFPYWFYFPRRKRAQVQQFVDQVQAWGEIERCLPGHLDAIPAAAVGEEQTAEE--VKRIFLQSFDFILR 330          
BLAST of NO06G01240 vs. NCBI_GenBank
Match: EWM30496.1 (Protein of unknown function DUF4336 [Nannochloropsis gaditana])

HSP 1 Score: 105.5 bits (262), Expect = 3.200e-19
Identity = 75/236 (31.78%), Postives = 126/236 (53.39%), Query Frame = 0
Query:   70 PLLFPPSVRPTSVFFGDKRNKLWTFEQPFIT-TTNIKSRMSVFK-SGSSIVIYSPIAATPECLDMVKQTAGGLPTHI-----IMQSNAVDHTLFLEGWRKAIPSAQILNISPTKGDLP--LLLNPSSSANSTRNVVPLPFQSTTAPIVEAALLDIPPFFQEVVLFHKPSKSILCADAIWRVVSPEFSPNVVAATGWKAIFFVDGV-SRF--PYWFYFPRRKRAEVSRFVEQVQGWG 294
            P L PP  +PT++   D++  LW FEQPF+    ++K+RMSV + S     +YSP+AATPEC+DM+K         +     ++ S+  +H   L  WR+  P A+++++ P    +   LL  PS+ A S    +P P +      ++ A+ +  P  +E+VL HKPSK++  AD+ +  ++ E+S ++      + I  + G+  RF  P +F     K+ E  R  E+V+ WG
Sbjct:  138 PSLLPPRKKPTTLLISDRKRGLWVFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMVPSSFPEHHESLVTWREVFPEARVVSVHPRINVISEFLLEGPSTDAPSQ---LPFPLRKD----LDVAVYE-TPLLREMVLTHKPSKTLFVADSGF-YINEEYSNSLT-----RGITQLQGIYDRFVTPPFFRLGMNKK-EGKRLYERVKDWG 358          
BLAST of NO06G01240 vs. NCBI_GenBank
Match: CBJ25644.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 80.5 bits (197), Expect = 1.100e-11
Identity = 57/176 (32.39%), Postives = 86/176 (48.86%), Query Frame = 0
Query:   67 QRFPLLFPPSVRPTSVFFGDKR--NKLWTFEQPF--ITTTNIKSRMSVFK-SGSSIVIYSPIAATPECLDMVKQTAGGLPTHIIMQSNAVDHTLFLEGWRKAIPSAQILNISPTKGDLPLLLNPSSSANSTRNVVPLPFQSTTAPIVEAALLDIPPFFQEVVLFHKPSKSILCADA 238
            Q FP LFPP  RP      D      LW FEQP   + T  + SRM+V+  S  SI +Y+PIA T E L  +    GG P HII+ + A ++ LF+ GW +  P A    +   K  LP        A  T+++    F  +    ++ ++L+    F+E  L H+ ++S+   D+
Sbjct:   54 QAFPGLFPPVHRPLRWRDEDSEPMRGLWLFEQPLQTVPTVEMYSRMAVYALSDGSICVYNPIAPTEETLQEISDAFGG-PDHIIVPTTAWNNLLFVAGWAERFPRATFWGLEGVK--LP-------GAKFTKDLTMESFPESWKAELDVSILEGNGIFRECFLLHRTTRSVFAMDS 219          
BLAST of NO06G01240 vs. NCBI_GenBank
Match: WP_038081414.1 (DUF4336 domain-containing protein [Tolypothrix bouteillei] >KIE09383.1 hypothetical protein DA73_0234120 [Tolypothrix bouteillei VB521301])

HSP 1 Score: 80.5 bits (197), Expect = 1.100e-11
Identity = 59/181 (32.60%), Postives = 95/181 (52.49%), Query Frame = 0
Query:   91 LWTFEQ-PFITTTNIKSRMSVFK-SGSSIVIYSPIAATPECLDMVKQTA---GGLPTHIIMQSNAVDHTLFLEGWRKAIPSAQILNISPTKGDLPLLLNPSSSANSTRNVVPLPFQSTTAPIV---EAALLDI---PPFFQEVVLFHKPSKSILCADAIWRVVSPEFSPNVVAATGWKAIF 261
            +WTFEQ   I  T +  RM+V K SG  ++IY+P+A TPEC+ ++K+     G +   I+  S+ ++H +F+  + +  P AQ+  +SP +   P+ L  S     ++    +P  S+  P     + A+LDI      F EV LFHK S+++L  D I  V  PE  P +V    +  +F
Sbjct:   38 IWTFEQVQGILYTVVPIRMTVVKLSGGGLLIYAPVAPTPECIRLLKEVVAKHGDVKYIILPTSSGLEHKVFVGPFARRFPQAQVF-VSPHQWSFPVNLPLSWLGFPSKRTYIIPENSSELPFADDFDCAVLDINLGRGSFVEVALFHKRSRTLLLTDTILSV--PEDPPAIVQLDPYPLLF 215          
BLAST of NO06G01240 vs. NCBI_GenBank
Match: XP_005646585.1 (hypothetical protein COCSUDRAFT_16894 [Coccomyxa subellipsoidea C-169] >EIE22041.1 hypothetical protein COCSUDRAFT_16894 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 78.6 bits (192), Expect = 4.200e-11
Identity = 55/192 (28.65%), Postives = 100/192 (52.08%), Query Frame = 0
Query:   69 FPLLFPPSVRPTSVFFGDKRNKLWTFEQPFI-----TTTNIKSRMSVFKSGSSIVIYSPIAATPECLDMVKQTAGGLPTHIIMQSNAVDHTLFLEGWRKAIPSAQILNISPTKGDLPLLLNPS-----SSANSTRNVVPLPFQSTTAPIVEAALLDIPPFFQEVVLFHKPSKSILCADAIWRVVSPEFSPNV 251
            FP    P +   ++ +  +R  +WTFEQ         TTN++  +   +SG  + +++PIA T EC+ +VK+  G    HI++ + AV+H LF+  + +A PSAQ+ +++P +   PL L         S+    N    P+       + ++ + I PF  EV  FHK ++++L  D++  ++ P+ +P V
Sbjct:  125 FPFPLGPLLTRRTIRYEVERGSMWTFEQEQALGFSNVTTNVRMTVIKLRSG-GLWVHAPIAPTKECVALVKE-LGAPVEHIVLPTFAVEHKLFVGPFSRAFPSAQV-HVAPRQWSWPLWLPVQFFGIFPSSILVDNDASTPWADELEQKIFSSAVGIGPFL-EVAFFHKATRTLLTTDSV--IMVPQTAPEV 310          
BLAST of NO06G01240 vs. NCBI_GenBank
Match: WP_012160845.1 (DUF4336 domain-containing protein [Acaryochloris marina] >ABW25230.1 conserved hypothetical protein [Acaryochloris marina MBIC11017])

HSP 1 Score: 77.4 bits (189), Expect = 9.300e-11
Identity = 59/186 (31.72%), Postives = 94/186 (50.54%), Query Frame = 0
Query:   88 RNKLWTFEQ-PFITTTNIKSRMSVFK-SGSSIVIYSPIAATPECLDMVK---QTAGGLPTHIIMQSNAVDHTLFLEGWRKAIPSAQILNISPTKGDLPLLLNPSSSANSTRNVVPLPFQSTTAP--------IVEAALLDIPPFFQEVVLFHKPSKSILCADAIWRVVSPEFSPNVVAATGWKAIF 261
            + K+WTFEQ   I    I  RM+V K +   +++Y+P+A T EC+ MVK   +  G +   I+  ++ ++H +F   + K  P AQ+  +SP++   PL +  S    S R    LP  S   P        I+    L + P F+EV L+HKP+K++L  D+I  V  P   P V+    +  +F
Sbjct:   48 KGKIWTFEQLQGILYVIIPVRMTVIKLAAGGLLVYAPVAPTRECIRMVKDLIEKHGEIKYIILPTASGIEHKVFTGPFSKRFPKAQVF-VSPSQWTFPLNIPLSWLGLSGRQTQKLPANSADTPFADEFDYAILGPVDLGLGP-FEEVALYHKPTKTLLITDSI--VSIPVNPPQVLQFAPYPMLF 229          
BLAST of NO06G01240 vs. NCBI_GenBank
Match: WP_039780492.1 (DUF4336 domain-containing protein [Acaryochloris sp. CCMEE 5410])

HSP 1 Score: 76.6 bits (187), Expect = 1.600e-10
Identity = 58/186 (31.18%), Postives = 95/186 (51.08%), Query Frame = 0
Query:   88 RNKLWTFEQ-PFITTTNIKSRMSVFK-SGSSIVIYSPIAATPECLDMVK---QTAGGLPTHIIMQSNAVDHTLFLEGWRKAIPSAQILNISPTKGDLPLLLNPSSSANSTRNVVPLPFQSTTAP--------IVEAALLDIPPFFQEVVLFHKPSKSILCADAIWRVVSPEFSPNVVAATGWKAIF 261
            + K+WTFEQ   I    I  RM+V K +   +++Y+P+A T EC+ +VK   +  G +   I+  ++ ++H +F   + K  P AQ+  +SP++   PL +  S    S R    LP  S   P        I+    L + P F+EV L+HKP+K++L  D+I  V  P   P V+  + +  +F
Sbjct:   48 KGKIWTFEQLQGILYVIIPVRMTVIKLAAGGLLVYAPVAPTRECIRLVKDLIEQHGEIKYIILPTASGIEHKVFTGPFSKRFPKAQVF-VSPSQWTFPLNIPLSWLGLSGRQTQKLPASSADTPFADEFDYAILGPVDLGLGP-FEEVALYHKPTKTLLITDSI--VSIPVNPPQVLQFSPYPMLF 229          
BLAST of NO06G01240 vs. NCBI_GenBank
Match: WP_066117435.1 (DUF4336 domain-containing protein [Geminocystis sp. NIES-3709] >BAQ64569.1 Sll1399 protein [Geminocystis sp. NIES-3709])

HSP 1 Score: 76.6 bits (187), Expect = 1.600e-10
Identity = 56/200 (28.00%), Postives = 103/200 (51.50%), Query Frame = 0
Query:   72 LFPPSVRPTSVFFGDKRNKLWTFEQPF-ITTTNIKSRMSVFK-SGSSIVIYSPIAATPECLDMVKQTA---GGLPTHIIMQSNAVDHTLFLEGWRKAIPSAQILNISPTKGDLPLLLNPSSSANSTRNVVPLPFQSTTAPIVEA---ALLDI---PPFFQEVVLFHKPSKSILCADAIWRVVSPEFSPNVVAATGWKAIF 261
            L+P   RPT +     ++ +WTFEQP  +    +  RM++ K +   +++Y PIA TPEC+++VK+     G +   I   S+ ++H +F+  + +  P  ++ + +P++   PL L  +     +R    LP     +P  +     +LDI   P  F EV L HKPSK++L  D + ++  P++ P ++    +  +F
Sbjct:   18 LYPYRQRPT-LREEIVKDTIWTFEQPHGLLYAVVPIRMTIVKLAKGGLLVYCPIAPTPECVNLVKELENDHGEVKYIIHSTSSGLEHKVFVGPFARYFPQGEVWS-APSQWSFPLNLPLTWLGFPSRRTKILPPDCQKSPFADEFNYQILDIDLSPGSFVEVALLHKPSKTLLVTDTVIKI--PQYPPKIIKLNPFPLLF 213          
BLAST of NO06G01240 vs. NCBI_GenBank
Match: WP_013324066.1 (DUF4336 domain-containing protein [Cyanothece sp. PCC 7822] >ADN15998.1 conserved hypothetical protein [Cyanothece sp. PCC 7822])

HSP 1 Score: 74.3 bits (181), Expect = 7.900e-10
Identity = 56/185 (30.27%), Postives = 96/185 (51.89%), Query Frame = 0
Query:   88 RNKLWTFEQ-PFITTTNIKSRMSVFK-SGSSIVIYSPIAATPECLDMVKQTA---GGLPTHIIMQSNAVDHTLFLEGWRKAIPSAQILNISPTKGDLPLLLNPSSSANSTRNVVPLPFQSTTAPI---VEAALLDI----PPFFQEVVLFHKPSKSILCADAIWRVVSPEFSPNVVAATGWKAIF 261
            ++++WTFEQ   I    +  RMSV K S   +++Y+P+A TPEC+ +V++     G +   I+   + ++H +F+  + +   SAQ+  +SP +   PL L  S      +    LPF S+  P    ++ A+L      P  FQEV LF K S+++L  D++  +  PE  P +V    +  +F
Sbjct:   40 KDQVWTFEQIQGILYVIVPIRMSVIKLSVGGLLVYAPVAPTPECIRLVRELEVQHGEVKYIILPTISGIEHKVFVGPFARYFKSAQVF-VSPNQWSFPLNLPLSWLGFPGKRTHFLPFDSSQTPFADQIDYAILKTIELGPGQFQEVALFDKHSQTLLVTDSVLSI--PENPPAIVQLDPYALLF 221          
BLAST of NO06G01240 vs. NCBI_GenBank
Match: WP_017748287.1 (DUF4336 domain-containing protein [Scytonema hofmannii] >KYC36540.1 hypothetical protein WA1_43400 [Scytonema hofmannii PCC 7110])

HSP 1 Score: 73.9 bits (180), Expect = 1.000e-9
Identity = 56/180 (31.11%), Postives = 93/180 (51.67%), Query Frame = 0
Query:   91 LWTFEQ-PFITTTNIKSRMSVFK-SGSSIVIYSPIAATPECLDMVKQTA---GGLPTHIIMQSNAVDHTLFLEGWRKAIPSAQILNISPTKGDLP--LLLNPSSSANSTRNVVPLPFQSTTAPIVEAALLDI---PPFFQEVVLFHKPSKSILCADAIWRVVSPEFSPNVVAATGWKAIF 261
            +WT EQ   I  T +  RM+V K S   ++IY+P+A TPEC+ +VK+     G +   I+  S+ ++H +F+  + +  P AQ+  ++P +   P  L L+     ++   ++P       A   + A+LDI     +F EV LFHK S+++L  D I  V  PE  P +V    +  +F
Sbjct:   38 IWTLEQVQGILYTVVPIRMTVVKLSAGGLLIYAPVAPTPECIRLVKELEAKHGDVKYIILPTSSGLEHKVFVGPFARRFPQAQVF-VAPHQWSFPVDLPLSWLGFPSNRTQIIPKNSSLPFADDFDCAVLDINLGRGYFVEVALFHKRSRTLLLTDTILSV--PEEPPAIVQLDPYPLLF 214          
The following BLAST results are available for this feature:
BLAST of NO06G01240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26165.11.400e-11064.69Protein of unknown function DUF4336 [Nannochlorops... [more]
EWM30496.13.200e-1931.78Protein of unknown function DUF4336 [Nannochlorops... [more]
CBJ25644.11.100e-1132.39conserved unknown protein [Ectocarpus siliculosus][more]
WP_038081414.11.100e-1132.60DUF4336 domain-containing protein [Tolypothrix bou... [more]
XP_005646585.14.200e-1128.65hypothetical protein COCSUDRAFT_16894 [Coccomyxa s... [more]
WP_012160845.19.300e-1131.72DUF4336 domain-containing protein [Acaryochloris m... [more]
WP_039780492.11.600e-1031.18DUF4336 domain-containing protein [Acaryochloris s... [more]
WP_066117435.11.600e-1028.00DUF4336 domain-containing protein [Geminocystis sp... [more]
WP_013324066.17.900e-1030.27DUF4336 domain-containing protein [Cyanothece sp. ... [more]
WP_017748287.11.000e-931.11DUF4336 domain-containing protein [Scytonema hofma... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL089nonsL089Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR145ngnoR145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000315NSK000315Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G01240.1NO06G01240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100121g3gene4353Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G01240.1NO06G01240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G01240 ID=NO06G01240|Name=NO06G01240|organism=Nannochloropsis oceanica|type=gene|length=1229bp
ATGCTAGCAAGAAGAAGAAGACTGGAGCAGCCTCGTCTGCACTTCTTACT
ACTGCTGCTGCTGTCTTTGGGCTCTGCGGCCACCCACTCCGTCCTCGCCT
TGCTCAATCATGCACCATCATCAAGTCTTCGCCCAGGCATCGCAACTAGC
AGCGCAAGAATGGCCACGACGACCGACAGGGCCTCAACGACTGCGCGGCA
AAGATTTCCGTTGCTTTTCCCTCCATCCGTGCGCCCTACGTCCGTTTTCT
TTGGCGACAAACGCAACAAACTCTGGACCTTTGAGCAGCCATTCATAACC
ACCACCAACATCAAGAGCAGgtaaggatctgtcggtcctcatttttaatg
gttttcactcggcaactgaagtcgcaccatatattctcatatcatgcgct
cgccctttttattctgacacagGATGAGCGTCTTCAAATCCGGCTCCTCA
ATAGTTATTTACTCCCCTATCGCTGCCACCCCCGAGTGCCTCGACATGGT
CAAACAAACAGCCGGGGGTTTGCCAACGCACATAATCATGCAGgtaaggg
cacgatatatgccctgttcgaaagttgccaatttctccacaaaggcttag
tccttgtttcaccttcttacactttcctttacgctgacatatctgcactc
taactcattcagAGTAATGCCGTCGACCACACCCTCTTCCTTGAAGGCTG
GCGCAAAGCCATCCCTTCAGCTCAAATCCTGAACATATCTCCGACGAAGG
GTGACCTGCCACTCCTCCTCAATCCCTCATCCTCCGCCAACTCCACTAGG
AACGTGGTGCCCCTGCCCTTTCAGAGTACCACTGCCCCCATCGTCGAAGC
AGCCTTGCTGGATATCCCTCCATTCTTTCAAGAAGTCGTCCTCTTTCACA
AGCCCAGCAAGAGCATTTTGTGTGCAGATGCGATATGGCGGGTCGTCTCT
CCTGAGTTCTCTCCCAATGTGGTGGCGGCCACGGGCTGGAAAGCTATATT
CTTTGTCGATGGGGTCTCGCGCTTTCCCTACTGGTTTTATTTCCCAAGGC
GGAAGCGGGCCGAGGTGTCGCGCTTCGTTGAACAGGTCCAGGGATGGGGA
GAGATCAAGCGTTGTCTACCGGGCCATTTGGACCCTATTCCATCGGCGGG
CGTGGGGGAGAAGGAGGGAGTAGGCGAAGTCGATGTCAAGCGCGTTTTCT
TGGACTCGTTCGACTTCATTTTACGATAG
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protein sequence of NO06G01240.1

>NO06G01240.1-protein ID=NO06G01240.1-protein|Name=NO06G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp
MLARRRRLEQPRLHFLLLLLLSLGSAATHSVLALLNHAPSSSLRPGIATS
SARMATTTDRASTTARQRFPLLFPPSVRPTSVFFGDKRNKLWTFEQPFIT
TTNIKSRMSVFKSGSSIVIYSPIAATPECLDMVKQTAGGLPTHIIMQSNA
VDHTLFLEGWRKAIPSAQILNISPTKGDLPLLLNPSSSANSTRNVVPLPF
QSTTAPIVEAALLDIPPFFQEVVLFHKPSKSILCADAIWRVVSPEFSPNV
VAATGWKAIFFVDGVSRFPYWFYFPRRKRAEVSRFVEQVQGWGEIKRCLP
GHLDPIPSAGVGEKEGVGEVDVKRVFLDSFDFILR*
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Synonyms
Publications