NO06G01150, NO06G01150 (gene) Nannochloropsis oceanica

Overview
NameNO06G01150
Unique NameNO06G01150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1959
Alignment locationchr6:365212..367170 -

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Properties
Property NameValue
DescriptionAtp-dependent clp protease adaptor protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:365212..367170 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0030163protein catabolic process
GO:0019538protein metabolic process
GO:0009056catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR014719Ribosomal_L7/12_C/ClpS-like
IPR003769ClpS_core
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Homology
BLAST of NO06G01150 vs. NCBI_GenBank
Match: EWM26126.1 (atp-dependent clp protease adaptor protein [Nannochloropsis gaditana])

HSP 1 Score: 216.5 bits (550), Expect = 8.100e-53
Identity = 115/152 (75.66%), Postives = 120/152 (78.95%), Query Frame = 0
Query:   66 RTRVIPRLA-------ALSMSDTGLGTGKQAKGGVKVGVKEREATKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWECTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPDSNFKKDGEGGEGGGSQGGKK 211
            R+  +PR+A        +SMSD G GTGKQAKGGVK                  FEVEWRVLLHNDDVHTFDYVSRKLAE+VPTLTRSKAWECTLAAHSHDFSTIAIVTK SAEEFCMKLQKEGLTISVAPDSNFKKDGEGGEGGG QGGKK
Sbjct:   68 RSDGVPRIAHTSRSALPVSMSDVGFGTGKQAKGGVKXXXXXXXXXXXXXXXXXXFEVEWRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDSNFKKDGEGGEGGGPQGGKK 219          
BLAST of NO06G01150 vs. NCBI_GenBank
Match: CBN76865.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 99.0 bits (245), Expect = 1.900e-17
Identity = 58/144 (40.28%), Postives = 81/144 (56.25%), Query Frame = 0
Query:   64 LQRTRVIPRLAALSMS-----DTGLGTGKQAKGGVKVGVKEREATKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWECTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPDSNFKKDGEGGEG 203
            L + RV  R   LSMS     D   G G        V  K +E  +   KE+   E  WRV+LHND++HTFDYV++ + +VV  LT  KA+E T+  H    +T+    K+ +E +C++LQ+ GLT S+APDS F+  GEG  G
Sbjct:   55 LTQQRVSQRSRWLSMSSATDQDVSTGGGXXXXXXXIVKEKVKEMVEVDNKEELDKEQWWRVILHNDEIHTFDYVTQSITKVVKKLTMKKAYEVTMETHKSGKATVTQAWKSKSESYCLQLQQCGLTASIAPDSKFEGGGEGAGG 198          
BLAST of NO06G01150 vs. NCBI_GenBank
Match: XP_009037232.1 (hypothetical protein AURANDRAFT_17179, partial [Aureococcus anophagefferens] >EGB07853.1 hypothetical protein AURANDRAFT_17179, partial [Aureococcus anophagefferens])

HSP 1 Score: 96.3 bits (238), Expect = 1.200e-16
Identity = 41/84 (48.81%), Postives = 63/84 (75.00%), Query Frame = 0
Query:  118 RVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWECTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPDSNFKKDGEGGE 202
            R+LLHNDDVHTF+YV+  L +++PT++ +KA++ T+  H    ST++   K  A+++C++LQK GLT S++PDSNFK +  GGE
Sbjct:    1 RLLLHNDDVHTFEYVTYMLQKIIPTISNAKAYQLTMTTHCEGVSTVSQTAKPLAQKYCVQLQKGGLTASISPDSNFKNNRSGGE 84          
BLAST of NO06G01150 vs. NCBI_GenBank
Match: XP_005536834.1 (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >BAM80798.1 hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 95.1 bits (235), Expect = 2.700e-16
Identity = 56/117 (47.86%), Postives = 68/117 (58.12%), Query Frame = 0
Query:   84 GTGKQAKGGVKVGVKERE------ATKTSP----KEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWECTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPD 191
            GTG  A GG + G +          TKT P    KEK   E  WRVLLHND++HTFDYV+  L +VV TLTR KA   T+ AH    +T+    K  AEE+C  LQ+EGLT S+ PD
Sbjct:   90 GTGAGAPGGDESGERXXXXXXVAVITKTKPAVREKEKTAKEPMWRVLLHNDNIHTFDYVTHTLVKVVKTLTRYKAHRITVHAHKAGVATVTTTWKQLAEEYCQGLQREGLTSSIMPD 206          
BLAST of NO06G01150 vs. NCBI_GenBank
Match: OEU15475.1 (hypothetical protein FRACYDRAFT_218307 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 95.1 bits (235), Expect = 2.700e-16
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = 0
Query:   87 KQAKGGVKVGVKEREATKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWECTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPDSNFKKDGEGGEGGGS 206
            +  K G+   VKER  T+T  K+ +K E  WRV+LHND+VHTF+YV R L++ + TL R  ++E  +  H    +T+    K  AE+FC+ LQ++GLT+S++PD +F    EGG  GG+
Sbjct:   43 RSTKKGLTTIVKER--TETETKDDKKKEEMWRVVLHNDEVHTFNYVIRSLSKCIGTLDRKASFEICVETHGVGKATVTKTWKKQAEQFCLGLQRQGLTVSISPDEDF----EGGHSGGN 155          
BLAST of NO06G01150 vs. NCBI_GenBank
Match: GAX12344.1 (hypothetical protein FisN_1Hu277 [Fistulifera solaris])

HSP 1 Score: 95.1 bits (235), Expect = 2.700e-16
Identity = 55/133 (41.35%), Postives = 81/133 (60.90%), Query Frame = 0
Query:   72 RLAALSMSDTGLGTGKQAKGGVKVGVKEREATKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWECTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPDSNFKKDGEGGEGGG 205
            RL+  S+  + +      K G  V V ++  T+T  +E++K E  WRV+LHND+VHTF+YV R L +V+ TL R  A+E  +  H    +TI    K  AE+FC+ LQ++GLT+S++PD +F    EGG  GG
Sbjct:   37 RLSDTSIYMSSVEKSSTTKKGKSVQVIDK--TETKAEEQKKKEEMWRVVLHNDEVHTFNYVVRSLTKVIGTLDRKAAFEICVQTHGIGKATITKTWKKQAEQFCLGLQRQGLTVSISPDEDF----EGGHSGG 163          
BLAST of NO06G01150 vs. NCBI_GenBank
Match: CEL99848.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 93.6 bits (231), Expect = 7.900e-16
Identity = 57/142 (40.14%), Postives = 81/142 (57.04%), Query Frame = 0
Query:   66 RTRVIPRLAALSMSDTGLGTGKQAKGGVK---VGVKEREATK--------TSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWECTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPDSNFKKD 197
            R + +P L  LSMS +  GT  +    VK   V + +RE TK               K   +WRVLLHNDD+HTF YV+  + EV+P ++ +KA   T+ AH +  +T+    K  AE +C+ LQ+ GLT+SVAPD +FKK+
Sbjct:   53 RRKAMP-LCVLSMSTSADGTQMEKIKEVKKAAVRLLDREETKXXXXXXXXXXXXXXXKQIKDWRVLLHNDDIHTFRYVTDSIIEVIPQISSAKAHTITVEAHKNGVATVTATWKDRAERYCVGLQRSGLTVSVAPDKDFKKN 193          
BLAST of NO06G01150 vs. NCBI_GenBank
Match: XP_013439542.1 (ATP-dependent Clp protease adaptor domain-containing protein, putative [Eimeria necatrix] >CDJ62180.1 ATP-dependent Clp protease adaptor domain-containing protein, putative [Eimeria necatrix])

HSP 1 Score: 90.1 bits (222), Expect = 8.700e-15
Identity = 42/98 (42.86%), Postives = 64/98 (65.31%), Query Frame = 0
Query:  104 KTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWECTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPDSNFKKDGEGGE 202
            K  P+++ +   EWRV+LHNDD+HTF+ V   + + +P ++R++A++  L AH+   +TI +  K  A E  + LQKEGLT+SV PD  F KD E G+
Sbjct:  216 KEGPEKRRQRVKEWRVVLHNDDIHTFECVENAITKTLPHISRARAYDIALHAHTTSKATIMLTWKEKAGEVALALQKEGLTVSVLPDRLFNKDSESGK 313          
BLAST of NO06G01150 vs. NCBI_GenBank
Match: XP_005787017.1 (hypothetical protein EMIHUDRAFT_455577 [Emiliania huxleyi CCMP1516] >EOD34588.1 hypothetical protein EMIHUDRAFT_455577 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 89.0 bits (219), Expect = 1.900e-14
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 0
Query:  101 EATKTSPKEKEKFEVE----WRVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWECTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPDSN 193
            E  K  PK+  K E+     WR+L+HNDDVHT+DYV   +  VV T+TR KA   T   H+   +T+ I  K  A+++CM+LQK GLT S+AP+S+
Sbjct:   79 ERPKAEPKQMSKEEIANEPMWRLLIHNDDVHTWDYVIYAIVSVVKTVTRKKAHRITTTVHTMGSATVTITWKQQAKKYCMELQKWGLTSSIAPESD 174          
BLAST of NO06G01150 vs. NCBI_GenBank
Match: XP_005787044.1 (hypothetical protein EMIHUDRAFT_455525 [Emiliania huxleyi CCMP1516] >EOD34615.1 hypothetical protein EMIHUDRAFT_455525 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 89.0 bits (219), Expect = 1.900e-14
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 0
Query:  101 EATKTSPKEKEKFEVE----WRVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWECTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPDSN 193
            E  K  PK+  K E+     WR+L+HNDDVHT+DYV   +  VV T+TR KA   T   H+   +T+ I  K  A+++CM+LQK GLT S+AP+S+
Sbjct:   79 ERPKAEPKQMSKEEIANEPMWRLLIHNDDVHTWDYVIYAIVSVVKTVTRKKAHRITTTVHTMGSATVTITWKQQAKKYCMELQKWGLTSSIAPESD 174          
The following BLAST results are available for this feature:
BLAST of NO06G01150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26126.18.100e-5375.66atp-dependent clp protease adaptor protein [Nannoc... [more]
CBN76865.11.900e-1740.28conserved unknown protein [Ectocarpus siliculosus][more]
XP_009037232.11.200e-1648.81hypothetical protein AURANDRAFT_17179, partial [Au... [more]
XP_005536834.12.700e-1647.86hypothetical protein, conserved [Cyanidioschyzon m... [more]
OEU15475.12.700e-1642.86hypothetical protein FRACYDRAFT_218307 [Fragilario... [more]
GAX12344.12.700e-1641.35hypothetical protein FisN_1Hu277 [Fistulifera sola... [more]
CEL99848.17.900e-1640.14unnamed protein product [Vitrella brassicaformis C... [more]
XP_013439542.18.700e-1542.86ATP-dependent Clp protease adaptor domain-containi... [more]
XP_005787017.11.900e-1445.83hypothetical protein EMIHUDRAFT_455577 [Emiliania ... [more]
XP_005787044.11.900e-1445.83hypothetical protein EMIHUDRAFT_455525 [Emiliania ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR098ncniR098Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000333NSK000333Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G01150.1NO06G01150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613575gene_10683Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100014g8gene4373Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G01150.1NO06G01150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G01150 ID=NO06G01150|Name=NO06G01150|organism=Nannochloropsis oceanica|type=gene|length=1959bp
GGAAGGGCCTTCGCTGTGTCTGTTACGTGTGGTGTGGTGTTGGGGGATAT
CGACAAATCAAGTCAGAAACTCATGGGCTGATCGCCCATTGTACTAAGGC
TTCGTGATGGTGTGCGTGGGAAAGGGGGGGCATTAATGTGGAGACAGCCG
TCTGCATTTTGTTTCTTCGATATGATTCGTGGCGTCGTTTGAGCGAGTGA
GTGAATAATGGCACTGATGTTTCTGCATCGGCTCGGCCACTGCTTGCCCT
GCCGCACAAACCGTACCACAACTTTCGAGTTGTTGCACCCAAGCAAGAAG
AAAGAGAGCTTGCGAATTGTCTTATCAAGGCGACTGGGCCTTGCGTACTC
ATAATTCATATCAAACCAAGCAAACCACAACAAAACACGCGTCTCGTGGC
GAGTTGCCCCCGTCAACAGCCAAGATCACCTCCACCCTACGCTGTACTGG
GAGCCCAAGCCCCAGTCTCTCAAGATCCACCACCACATATACCTAACACA
GCAGCCATGGCGTCCGTAAGACTACCGTTTTTACTCCACGCCTCTGTCCT
GGTCATGCTTCTGGCTCTTCTCTTGCCGTCGGCGCAGGCGTTTTTTCCCC
AGCAGCAGCTCTTCTCCTCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCTTTGATAAAGCACAGGACAGgtacgaattaaga
taaacacgagtagcagaggagagaagttgtgtctgtatcctaactgtgac
cggaagtgtggtcggtttgagcatgtggatgtgcggctgagggctgttgc
aatttgttccatggttacttctgggtgtgcgtacacttgtctgcgcctga
agtttaaatctccctggcagtttcgtatgagaataatttacttacttttt
aatgtgcctgcttcgatgcgcccttaaccctctctccctcctgaccacgt
attgaacaaggacgaaactcctcttgacttcacacagatatccttatatt
cttacttacgcccacccaccccgactctcgcgcacctacatatccaccgc
ttgagtagTAAAAGTGCTCCAACGGACACGTGTGATCCCCCGGTTAGCAG
CACTTTCGATGTCGGACACCGGGCTTGGTACGGGCAAGCAAGCCAAGGGT
GGGGTCAAGGTGGGGGTGAAAGAGAGGGAGGCGACCAAGACAAGCCCCAA
GGAGAAGGAGAAGTTCGAGGTGGAATGGCGGGTATTGTTGCACAACGATG
ATGTGCACACTTTTGATTACGTCTCCCGAAAATTGGCCGAGgtacgctgt
tattttcttttttgatctttttttcttaaggtctgctttttttagacaca
ccacctcgatgaccttatcttctcctttctgcccctgtccctccctctca
taagGTCGTACCCACATTAACCCGTTCCAAAGCTTGGGAATGTACATTGG
CCGCGCACTCCCATGATTTTTCCACGATTGCCATCGTGACCAAGACATCT
GCTGAGGAATTTTGCATGAAGCTCCAAAAGGAGGGTTTGACTATCTCCGT
CGCCCCTGACTCGAACTTCAAGAAGGATGGAGAGGGAGGGGAAGGAGGAG
GATCCCAGGGAGGAAAGAAGTAGAGCAGAATGGAAAAGTAGATTGAGAGG
AACAGGAACAGCAGCGGCAGCAGCAAGCACAACACACATGACGATGAAAT
CATAATGAGGCAGGCTTTGGAAAGAATAGGAGAGAAGCAGAGCCGAAGGA
CGTGTAGGATGAAGAGAGGCGAAAAATACGTAGAGAATTAAGCGGTTAAG
CACAACTTTGTGTGTCGGATGGCTCCTCGGGTGGTGCGGGGAAAGAGGAA
AGATGGGGTCTTGGCTTGGAGAGGCCGGTGGGGTAAGGAGGAGGCTGTGC
GCGCGGGAAATGTGAAAACTTTTAAAGAAGACAATACTCCACGAGTATAG
ACAACGTAA
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protein sequence of NO06G01150.1

>NO06G01150.1-protein ID=NO06G01150.1-protein|Name=NO06G01150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MASVRLPFLLHASVLVMLLALLLPSAQAFFPQQQLFSSSSSSSSSSSSSS
SSSSLIKHRTVKVLQRTRVIPRLAALSMSDTGLGTGKQAKGGVKVGVKER
EATKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWE
CTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPDSNFKKDGEGG
EGGGSQGGKK*
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Synonyms
Publications