NO06G01150.1, NO06G01150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01150.1
Unique NameNO06G01150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1475
Alignment locationchr6:365212..367170 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:365212..367170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO06G01150.1 vs.
Match: EWM26126.1 (atp-dependent clp protease adaptor protein [Nannochloropsis gaditana])

HSP 1 Score: 255.4 bits (651), Expect = 1.600e-64
Identity = 144/197 (73.10%), Postives = 155/197 (78.68%), Query Frame = 0 
Query:   14 VLVMLLALLLPSAQAFFPQQQLFSSSSSSSSSSSSSSSSSSLIKHRTVKVLQRTRVIPRLAALSMSDTGLGTGKQAKGGVKVGVKEREATKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWECTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPDSNFKKDGEGGEGGGSQGGKK 211
            V+++L+ALLL  +QAFF                S S S   L +HR+  V +          +SMSD G GTGKQAKGGVKVGVKE+EA KTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAE+VPTLTRSKAWECTLAAHSHDFSTIAIVTK SAEEFCMKLQKEGLTISVAPDSNFKKDGEGGEGGG QGGKK
Sbjct:   38 VILVLVALLLSWSQAFF---------------LSPSPSMGQLQQHRSDGVPRIAHTSRSALPVSMSDVGFGTGKQAKGGVKVGVKEKEAVKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDSNFKKDGEGGEGGGPQGGKK 219
The following BLAST results are available for this feature:
BLAST of NO06G01150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26126.11.600e-6473.10atp-dependent clp protease adaptor protein [Nannoc... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01150NO06G01150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01150.1NO06G01150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01150.1.cds1NO06G01150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01150.1.cds2NO06G01150.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01150.1.cds3NO06G01150.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01150.1 ID=NO06G01150.1|Name=NO06G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1475bp
GGAAGGGCCTTCGCTGTGTCTGTTACGTGTGGTGTGGTGTTGGGGGATAT
CGACAAATCAAGTCAGAAACTCATGGGCTGATCGCCCATTGTACTAAGGC
TTCGTGATGGTGTGCGTGGGAAAGGGGGGGCATTAATGTGGAGACAGCCG
TCTGCATTTTGTTTCTTCGATATGATTCGTGGCGTCGTTTGAGCGAGTGA
GTGAATAATGGCACTGATGTTTCTGCATCGGCTCGGCCACTGCTTGCCCT
GCCGCACAAACCGTACCACAACTTTCGAGTTGTTGCACCCAAGCAAGAAG
AAAGAGAGCTTGCGAATTGTCTTATCAAGGCGACTGGGCCTTGCGTACTC
ATAATTCATATCAAACCAAGCAAACCACAACAAAACACGCGTCTCGTGGC
GAGTTGCCCCCGTCAACAGCCAAGATCACCTCCACCCTACGCTGTACTGG
GAGCCCAAGCCCCAGTCTCTCAAGATCCACCACCACATATACCTAACACA
GCAGCCATGGCGTCCGTAAGACTACCGTTTTTACTCCACGCCTCTGTCCT
GGTCATGCTTCTGGCTCTTCTCTTGCCGTCGGCGCAGGCGTTTTTTCCCC
AGCAGCAGCTCTTCTCCTCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCTTTGATAAAGCACAGGACAGTAAAAGTGCTCCA
ACGGACACGTGTGATCCCCCGGTTAGCAGCACTTTCGATGTCGGACACCG
GGCTTGGTACGGGCAAGCAAGCCAAGGGTGGGGTCAAGGTGGGGGTGAAA
GAGAGGGAGGCGACCAAGACAAGCCCCAAGGAGAAGGAGAAGTTCGAGGT
GGAATGGCGGGTATTGTTGCACAACGATGATGTGCACACTTTTGATTACG
TCTCCCGAAAATTGGCCGAGGTCGTACCCACATTAACCCGTTCCAAAGCT
TGGGAATGTACATTGGCCGCGCACTCCCATGATTTTTCCACGATTGCCAT
CGTGACCAAGACATCTGCTGAGGAATTTTGCATGAAGCTCCAAAAGGAGG
GTTTGACTATCTCCGTCGCCCCTGACTCGAACTTCAAGAAGGATGGAGAG
GGAGGGGAAGGAGGAGGATCCCAGGGAGGAAAGAAGTAGAGCAGAATGGA
AAAGTAGATTGAGAGGAACAGGAACAGCAGCGGCAGCAGCAAGCACAACA
CACATGACGATGAAATCATAATGAGGCAGGCTTTGGAAAGAATAGGAGAG
AAGCAGAGCCGAAGGACGTGTAGGATGAAGAGAGGCGAAAAATACGTAGA
GAATTAAGCGGTTAAGCACAACTTTGTGTGTCGGATGGCTCCTCGGGTGG
TGCGGGGAAAGAGGAAAGATGGGGTCTTGGCTTGGAGAGGCCGGTGGGGT
AAGGAGGAGGCTGTGCGCGCGGGAAATGTGAAAACTTTTAAAGAAGACAA
TACTCCACGAGTATAGACAACGTAA
back to top

protein sequence of NO06G01150.1

>NO06G01150.1-protein ID=NO06G01150.1-protein|Name=NO06G01150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MASVRLPFLLHASVLVMLLALLLPSAQAFFPQQQLFSSSSSSSSSSSSSS
SSSSLIKHRTVKVLQRTRVIPRLAALSMSDTGLGTGKQAKGGVKVGVKER
EATKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEVVPTLTRSKAWE
CTLAAHSHDFSTIAIVTKTSAEEFCMKLQKEGLTISVAPDSNFKKDGEGG
EGGGSQGGKK*
back to top

mRNA from alignment at chr6:365212..367170-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01150.1 ID=NO06G01150.1|Name=NO06G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1959bp|location=Sequence derived from alignment at chr6:365212..367170- (Nannochloropsis oceanica)
GGAAGGGCCTTCGCTGTGTCTGTTACGTGTGGTGTGGTGTTGGGGGATAT
CGACAAATCAAGTCAGAAACTCATGGGCTGATCGCCCATTGTACTAAGGC
TTCGTGATGGTGTGCGTGGGAAAGGGGGGGCATTAATGTGGAGACAGCCG
TCTGCATTTTGTTTCTTCGATATGATTCGTGGCGTCGTTTGAGCGAGTGA
GTGAATAATGGCACTGATGTTTCTGCATCGGCTCGGCCACTGCTTGCCCT
GCCGCACAAACCGTACCACAACTTTCGAGTTGTTGCACCCAAGCAAGAAG
AAAGAGAGCTTGCGAATTGTCTTATCAAGGCGACTGGGCCTTGCGTACTC
ATAATTCATATCAAACCAAGCAAACCACAACAAAACACGCGTCTCGTGGC
GAGTTGCCCCCGTCAACAGCCAAGATCACCTCCACCCTACGCTGTACTGG
GAGCCCAAGCCCCAGTCTCTCAAGATCCACCACCACATATACCTAACACA
GCAGCCATGGCGTCCGTAAGACTACCGTTTTTACTCCACGCCTCTGTCCT
GGTCATGCTTCTGGCTCTTCTCTTGCCGTCGGCGCAGGCGTTTTTTCCCC
AGCAGCAGCTCTTCTCCTCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCTTTGATAAAGCACAGGACAGGTACGAATTAAGA
TAAACACGAGTAGCAGAGGAGAGAAGTTGTGTCTGTATCCTAACTGTGAC
CGGAAGTGTGGTCGGTTTGAGCATGTGGATGTGCGGCTGAGGGCTGTTGC
AATTTGTTCCATGGTTACTTCTGGGTGTGCGTACACTTGTCTGCGCCTGA
AGTTTAAATCTCCCTGGCAGTTTCGTATGAGAATAATTTACTTACTTTTT
AATGTGCCTGCTTCGATGCGCCCTTAACCCTCTCTCCCTCCTGACCACGT
ATTGAACAAGGACGAAACTCCTCTTGACTTCACACAGATATCCTTATATT
CTTACTTACGCCCACCCACCCCGACTCTCGCGCACCTACATATCCACCGC
TTGAGTAGTAAAAGTGCTCCAACGGACACGTGTGATCCCCCGGTTAGCAG
CACTTTCGATGTCGGACACCGGGCTTGGTACGGGCAAGCAAGCCAAGGGT
GGGGTCAAGGTGGGGGTGAAAGAGAGGGAGGCGACCAAGACAAGCCCCAA
GGAGAAGGAGAAGTTCGAGGTGGAATGGCGGGTATTGTTGCACAACGATG
ATGTGCACACTTTTGATTACGTCTCCCGAAAATTGGCCGAGGTACGCTGT
TATTTTCTTTTTTGATCTTTTTTTCTTAAGGTCTGCTTTTTTTAGACACA
CCACCTCGATGACCTTATCTTCTCCTTTCTGCCCCTGTCCCTCCCTCTCA
TAAGGTCGTACCCACATTAACCCGTTCCAAAGCTTGGGAATGTACATTGG
CCGCGCACTCCCATGATTTTTCCACGATTGCCATCGTGACCAAGACATCT
GCTGAGGAATTTTGCATGAAGCTCCAAAAGGAGGGTTTGACTATCTCCGT
CGCCCCTGACTCGAACTTCAAGAAGGATGGAGAGGGAGGGGAAGGAGGAG
GATCCCAGGGAGGAAAGAAGTAGAGCAGAATGGAAAAGTAGATTGAGAGG
AACAGGAACAGCAGCGGCAGCAGCAAGCACAACACACATGACGATGAAAT
CATAATGAGGCAGGCTTTGGAAAGAATAGGAGAGAAGCAGAGCCGAAGGA
CGTGTAGGATGAAGAGAGGCGAAAAATACGTAGAGAATTAAGCGGTTAAG
CACAACTTTGTGTGTCGGATGGCTCCTCGGGTGGTGCGGGGAAAGAGGAA
AGATGGGGTCTTGGCTTGGAGAGGCCGGTGGGGTAAGGAGGAGGCTGTGC
GCGCGGGAAATGTGAAAACTTTTAAAGAAGACAATACTCCACGAGTATAG
ACAACGTAA
back to top

Coding sequence (CDS) from alignment at chr6:365212..367170-

>NO06G01150.1 ID=NO06G01150.1|Name=NO06G01150.1|organism=Nannochloropsis oceanica|type=CDS|length=633bp|location=Sequence derived from alignment at chr6:365212..367170- (Nannochloropsis oceanica)
ATGGCGTCCGTAAGACTACCGTTTTTACTCCACGCCTCTGTCCTGGTCAT
GCTTCTGGCTCTTCTCTTGCCGTCGGCGCAGGCGTTTTTTCCCCAGCAGC
AGCTCTTCTCCTCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCTTTGATAAAGCACAGGACAGTAAAAGTGCTCCAACGGAC
ACGTGTGATCCCCCGGTTAGCAGCACTTTCGATGTCGGACACCGGGCTTG
GTACGGGCAAGCAAGCCAAGGGTGGGGTCAAGGTGGGGGTGAAAGAGAGG
GAGGCGACCAAGACAAGCCCCAAGGAGAAGGAGAAGTTCGAGGTGGAATG
GCGGGTATTGTTGCACAACGATGATGTGCACACTTTTGATTACGTCTCCC
GAAAATTGGCCGAGGTCGTACCCACATTAACCCGTTCCAAAGCTTGGGAA
TGTACATTGGCCGCGCACTCCCATGATTTTTCCACGATTGCCATCGTGAC
CAAGACATCTGCTGAGGAATTTTGCATGAAGCTCCAAAAGGAGGGTTTGA
CTATCTCCGTCGCCCCTGACTCGAACTTCAAGAAGGATGGAGAGGGAGGG
GAAGGAGGAGGATCCCAGGGAGGAAAGAAGTAG
back to top
Synonyms
Publications