NO06G00940, NO06G00940 (gene) Nannochloropsis oceanica

Overview
NameNO06G00940
Unique NameNO06G00940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1912
Alignment locationchr6:312338..314249 -

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Properties
Property NameValue
DescriptionMGC154358 protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:312338..314249 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Homology
BLAST of NO06G00940 vs. NCBI_GenBank
Match: XP_005707552.1 (peroxisomal membrane MPV17/PMP22-like protein [Galdieria sulphuraria] >EME31032.1 peroxisomal membrane MPV17/PMP22-like protein [Galdieria sulphuraria])

HSP 1 Score: 212.6 bits (540), Expect = 1.100e-51
Identity = 100/180 (55.56%), Postives = 126/180 (70.00%), Query Frame = 0
Query:    6 WTKYNAALETNPLLIKAMTSLTGFTLGDILAQKFVMPDEKGYDVMRTARLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLTTAVVGSWTVWIPAHFVNFRFVPSSQRLLYINSIQIGYNIFLSFLGNKKVDAPEVVK 186
            W +YN  LE+ PLL K++TSL GF LGDILAQKF+  D     + R  R+  FGFL+HGPTGH FY+ LDK IPGT    VA KVAIDQ+LW P F ++FF +L + E +SF   +AK++ D  TA+  SW VW  AH +NFRF+PS QRLLYIN++QI YN+FLS +GNK+   P V K
Sbjct:  111 WMRYNQLLESRPLLTKSLTSLIGFILGDILAQKFLSSDGI-LHLDRLLRMALFGFLIHGPTGHIFYTQLDKAIPGTEAWKVACKVAIDQVLWAPIFALIFFGFLAVLERQSFKQFEAKLRQDWKTAIFASWKVWPLAHAINFRFIPSHQRLLYINAVQIFYNVFLSIIGNKRTQIPRVSK 289          
BLAST of NO06G00940 vs. NCBI_GenBank
Match: CBJ27540.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 210.7 bits (535), Expect = 4.200e-51
Identity = 98/175 (56.00%), Postives = 128/175 (73.14%), Query Frame = 0
Query:    3 GRLWTKYNAALETNPLLIKAMTSLTGFTLGDILAQKFVMPDEKGYDVMRTARLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLTTAVVGSWTVWIPAHFVNFRFVPSSQRLLYINSIQIGYNIFLSFLGNKK 178
            G +W  Y + L + PLL K++TS+TGF LGD+LAQKF+   E+  D+ R  +L SFG L+HG +GH+FY++LD +IPGTA  TVA KV IDQ+LWNP FG MFF Y+G  +G   + I  KIKN+L T+V GSWTVW  AH +NFR +P+SQRLLYIN+IQI YN FLS +  ++
Sbjct:  124 GVIWAAYMSLLASQPLLTKSLTSMTGFALGDLLAQKFIDKKEE-IDLPRLLKLASFGALIHGSSGHFFYNFLDSKIPGTAALTVAKKVFIDQVLWNPIFGCMFFGYMGAVDGMGPSGISEKIKNNLWTSVKGSWTVWPVAHAINFRMIPTSQRLLYINTIQIFYNCFLSVIAQRE 297          
BLAST of NO06G00940 vs. NCBI_GenBank
Match: XP_005776476.1 (putative peroxisomal membrane protein [Emiliania huxleyi CCMP1516] >EOD24047.1 putative peroxisomal membrane protein [Emiliania huxleyi CCMP1516])

HSP 1 Score: 204.1 bits (518), Expect = 3.900e-49
Identity = 97/179 (54.19%), Postives = 119/179 (66.48%), Query Frame = 0
Query:    2 FGRLWTKYNAALETNPLLIKAMTSLTGFTLGDILAQKFVMPDEKGYDVMRTARLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLTTAVVGSWTVWIPAHFVNFRFVPSSQRLLYINSIQIGYNIFLSFLGNKKVDA 181
            F   W KYN  L+  PLL+KA TS  GF +GDILAQ F+   ++ +D  R  RL SFGFLVHG + H+FY  LD  IPG   + V TKV IDQ+LWNP  G+MFFSY+   E K    +  K +N+L   V GSW VW  AH +NFRF+PSSQR+LYINSIQIGYN FLS + N+  +A
Sbjct:   96 FASAWKKYNELLDEKPLLMKAFTSFLGFAIGDILAQIFI--QKQDFDWYRLFRLASFGFLVHGTSSHWFYGMLDSAIPGKGAQPVFTKVFIDQVLWNPILGIMFFSYVACLEWKGLQYVIDKTRNELLRQVTGSWKVWPLAHAINFRFIPSSQRVLYINSIQIGYNCFLSLISNRDAEA 272          
BLAST of NO06G00940 vs. NCBI_GenBank
Match: EWM28728.1 (Mpv17/PMP22 [Nannochloropsis gaditana])

HSP 1 Score: 202.2 bits (513), Expect = 1.500e-48
Identity = 94/175 (53.71%), Postives = 117/175 (66.86%), Query Frame = 0
Query:    3 GRLWTKYNAALETNPLLIKAMTSLTGFTLGDILAQKFVMPDEKGYDVMRTARLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLTTAVVGSWTVWIPAHFVNFRFVPSSQRLLYINSIQIGYNIFLSFLGNKK 178
            G LW KYN  L+TNPL  KA+TSL GFT+GD+LAQ F+       DV R  RL SFG  VHGP GH+FY  LD++ P    +TVA KV IDQ+LW P F V+FF+++ + +G     I+ KI  DL   V  SW VW   H +NFRF+P  QRLLYIN+IQIGYN+FLS L ++K
Sbjct:   79 GLLWDKYNEVLDTNPLPTKAVTSLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASRK 253          
BLAST of NO06G00940 vs. NCBI_GenBank
Match: CBN79193.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 200.3 bits (508), Expect = 5.700e-48
Identity = 92/174 (52.87%), Postives = 122/174 (70.11%), Query Frame = 0
Query:    3 GRLWTKYNAALETNPLLIKAMTSLTGFTLGDILAQKFVMPDEKGYDVMRTARLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLTTAVVGSWTVWIPAHFVNFRFVPSSQRLLYINSIQIGYNIFLSFLGNK 177
            G  W  YN+AL   P+L+KA TS  GF++GD LAQK     ++ +   R AR+ +FGFL HG   H+FY+ LD  +PGTA  TV  KV IDQ+ W P F ++FF+++G+  G S ++I AK+K+DL   VVGSWTVW  AH +NF+FVP+ QRLLYINSIQI YN+FLS +G+K
Sbjct:  124 GGAWDAYNSALADKPILVKACTSFVGFSIGDFLAQKGT--SKESFSYARLARMAAFGFLFHGTISHFFYNALDSALPGTAAMTVIQKVIIDQVFWAPIFTLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 295          
BLAST of NO06G00940 vs. NCBI_GenBank
Match: OEU19890.1 (hypothetical protein FRACYDRAFT_206674 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 195.3 bits (495), Expect = 1.800e-46
Identity = 89/171 (52.05%), Postives = 115/171 (67.25%), Query Frame = 0
Query:    6 WTKYNAALETNPLLIKAMTSLTGFTLGDILAQKFVMPDEKGYDVMRTARLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLTTAVVGSWTVWIPAHFVNFRFVPSSQRLLYINSIQIGYNIFLSFLGNK 177
            W  YN AL+T+PL  KA TSL G+ LGD+LAQ F+      +DV R   L +FG L HGP+GHYFY+WLD +IPG    +VA K+ IDQ LW P F  +FF+YLGL  G SF  I  KIK DL  A  GSW VW   HF+NF+F+ S  R+L++N +Q+ +N+FLS +G+K
Sbjct:   65 WASYNKALDTSPLTAKACTSLVGWALGDVLAQIFISGGP--FDVKRFVTLSAFGLLYHGPSGHYFYNWLDDKIPGKDGLSVAKKILIDQTLWCPLFMTVFFTYLGLVSGDSFGTIGTKIKTDLFAACQGSWKVWPVVHFINFKFISSKHRILFLNVVQVAFNMFLSLIGSK 233          
BLAST of NO06G00940 vs. NCBI_GenBank
Match: GAX16827.1 (peroxisomal membrane protein 2 [Fistulifera solaris])

HSP 1 Score: 194.5 bits (493), Expect = 3.100e-46
Identity = 90/171 (52.63%), Postives = 117/171 (68.42%), Query Frame = 0
Query:    6 WTKYNAALETNPLLIKAMTSLTGFTLGDILAQKFVMPDEKGYDVMRTARLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLTTAVVGSWTVWIPAHFVNFRFVPSSQRLLYINSIQIGYNIFLSFLGNK 177
            W  YN AL+  PL+ KAMTSL G+ LGD+LAQ F+      +D+ R   L  FGF+ HGP+GH+FY+WLDKQI G   + VA KV IDQL+W P F  +FF+YLGL  G S   I  K+KNDL TA  GSW VW   H VNF+F+ +  RL++IN++QI +N+FLS +G+K
Sbjct:   62 WAAYNEALDKKPLITKAMTSLVGWALGDLLAQIFISGGP--FDMKRFITLSVFGFIYHGPSGHFFYNWLDKQIEGKEAQHVALKVGIDQLIWCPIFMTVFFTYLGLVNGDSVAVIVDKVKNDLFTACQGSWKVWPIVHAVNFKFISTKHRLVFINAVQIAFNMFLSIIGSK 230          
BLAST of NO06G00940 vs. NCBI_GenBank
Match: OSX77133.1 (hypothetical protein BU14_0161s0053 [Porphyra umbilicalis])

HSP 1 Score: 193.4 bits (490), Expect = 7.000e-46
Identity = 98/168 (58.33%), Postives = 115/168 (68.45%), Query Frame = 0
Query:    9 YNAALETNPLLIKAMTSLTGFTLGDILAQKFVMPDEKGYDVMRTARLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLTTAVVGSWTVWIPAHFVNFRFVPSSQRLLYINSIQIGYNIFLSFLGNK 177
            Y   L   P+L KA+TS  GF +GDILAQ F+  D   +D  R AR+ SFGF++HG TGH +Y  LD+ +PGT    VA KVA DQLLW P F  M+FSYLGLAEG+S   IQAKI+ND    V  SW VW   H V+FRFVP+  R+LYINSIQI YNIFLS LGNK
Sbjct:   34 YEMWLGKKPILTKALTSAVGFAIGDILAQCFLGGD-AAFDWARFARVASFGFVLHGTTGHVWYGKLDQLLPGTEAWKVAVKVAADQLLWAPIFTAMYFSYLGLAEGRSMDYIQAKIQNDTMAGVTASWKVWPIVHAVSFRFVPTELRILYINSIQIFYNIFLSVLGNK 200          
BLAST of NO06G00940 vs. NCBI_GenBank
Match: OSX77134.1 (hypothetical protein BU14_0161s0053 [Porphyra umbilicalis])

HSP 1 Score: 193.4 bits (490), Expect = 7.000e-46
Identity = 98/168 (58.33%), Postives = 115/168 (68.45%), Query Frame = 0
Query:    9 YNAALETNPLLIKAMTSLTGFTLGDILAQKFVMPDEKGYDVMRTARLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLTTAVVGSWTVWIPAHFVNFRFVPSSQRLLYINSIQIGYNIFLSFLGNK 177
            Y   L   P+L KA+TS  GF +GDILAQ F+  D   +D  R AR+ SFGF++HG TGH +Y  LD+ +PGT    VA KVA DQLLW P F  M+FSYLGLAEG+S   IQAKI+ND    V  SW VW   H V+FRFVP+  R+LYINSIQI YNIFLS LGNK
Sbjct:   33 YEMWLGKKPILTKALTSAVGFAIGDILAQCFLGGD-AAFDWARFARVASFGFVLHGTTGHVWYGKLDQLLPGTEAWKVAVKVAADQLLWAPIFTAMYFSYLGLAEGRSMDYIQAKIQNDTMAGVTASWKVWPIVHAVSFRFVPTELRILYINSIQIFYNIFLSVLGNK 199          
BLAST of NO06G00940 vs. NCBI_GenBank
Match: EJK54998.1 (hypothetical protein THAOC_25323 [Thalassiosira oceanica])

HSP 1 Score: 193.0 bits (489), Expect = 9.100e-46
Identity = 92/168 (54.76%), Postives = 115/168 (68.45%), Query Frame = 0
Query:    9 YNAALETNPLLIKAMTSLTGFTLGDILAQKFVMPDEKGYDVMRTARLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLTTAVVGSWTVWIPAHFVNFRFVPSSQRLLYINSIQIGYNIFLSFLGNK 177
            Y+ AL+ NP+ +KA+TSL G+ LGD+LAQ F+       D  R A L  FGF+ HGP+GHYFY+WLD +IPGT    V TKVAIDQL W P F  +FF+YLG+  G S   I  KIKNDL TA  GSW VW   H +NFRFV +  R+ YIN++QI +N+FLS LG+K
Sbjct:   71 YSEALDKNPITMKALTSLVGWFLGDLLAQLFIAGGP--VDYKRLATLSFFGFIYHGPSGHYFYNWLDSKIPGTDAAPVFTKVAIDQLFWCPIFMSVFFTYLGVVNGDSLATIGNKIKNDLLTACQGSWKVWPIVHLINFRFVSNKWRIPYINAVQIAFNMFLSLLGSK 236          
The following BLAST results are available for this feature:
BLAST of NO06G00940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005707552.11.100e-5155.56peroxisomal membrane MPV17/PMP22-like protein [Gal... [more]
CBJ27540.14.200e-5156.00conserved unknown protein [Ectocarpus siliculosus][more]
XP_005776476.13.900e-4954.19putative peroxisomal membrane protein [Emiliania h... [more]
EWM28728.11.500e-4853.71Mpv17/PMP22 [Nannochloropsis gaditana][more]
CBN79193.15.700e-4852.87conserved unknown protein [Ectocarpus siliculosus][more]
OEU19890.11.800e-4652.05hypothetical protein FRACYDRAFT_206674 [Fragilario... [more]
GAX16827.13.100e-4652.63peroxisomal membrane protein 2 [Fistulifera solari... [more]
OSX77133.17.000e-4658.33hypothetical protein BU14_0161s0053 [Porphyra umbi... [more]
OSX77134.17.000e-4658.33hypothetical protein BU14_0161s0053 [Porphyra umbi... [more]
EJK54998.19.100e-4654.76hypothetical protein THAOC_25323 [Thalassiosira oc... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000357NSK000357Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00940.1NO06G00940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100014g31gene4394Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00940.1NO06G00940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00940 ID=NO06G00940|Name=NO06G00940|organism=Nannochloropsis oceanica|type=gene|length=1912bp
TTGTATTGAGATCTTTCGTAGGAGACTTTCCCTTAAAAACTGCAAGGCTG
CTGCTACTTCTACTGCTACCTGTGATGTCTGCCTCCGTGGCCGACAATGT
AGAATCTGAAACGCGCTCGAGTGTGAGCGGTTGTGTTGTTGTGGTCTCGT
GGGGAAAACCCTGAGGTGAGGAGGTCATCCCCATTCTTGCCCTCTACCCC
TCTGTTTGCTGCAAGAACATCCACACGCCTCTCTCTTCCTACACACATAA
AGGGCACAAACGTGCCGTTTAGATACTCTTGCCCCCGCGTTACTTCTTCT
AGACGTCCAGCTTGGCCCGCGCGTAGTAGGGCTTCAGTCGTCAGATCCAC
CGTCCCGGCTTTTGCCTCCGCAGCTGTTGCAGTCCTTCGTACTCAACACC
ACCCGCGCGTGCTGTCCGCACATGCCCGAGCACAAGCGTATCCATGTCAT
TACGGGCCTACTGTGGTGTGGGCTTGCCAGTTTCCCTGCAGCACGTCTTG
CAAGACCGTGCTTTTAGAAATGCATCAAAAGTATCATCATGCTCCGACAT
GAATACCAACACCTTTCCACCCATTTCTCTTGTAACAGGTCACTCGCCTC
TCAAATCCCTTAGAAATCATGTTCGGACGTCTGTGGACAAAGTACAATGC
GGCATTGGAGACGAACCCTCTGCTGATCAAGGCTATGACCTCCCTCACGG
GCTTCACCCTCGGTGACATCCTCGCCCAGAAATTCGTTATGCCCGACGAG
AAGGGTTACGACGTGATGCGTACCGCCCGTCTGGGTTCCTTCGGTTTCCT
GGTTCACGGGCCCACTGGCCACTACTTCTACAGCTGGCTTGACAAGCAGA
TTCCGGGCACGGCCATGAAGACTGTTGCCACAAAGGTGGCTATCGATCAG
CTCCTTTGGAACCCATGCTTCGGCGTCATGTTCTTCTCTTACCTAGGTTT
GGCCGAGGGCAAGTCGTTTACGGACATCCAGGCCAAAATTAAGAATGATT
TGACGACGGCGGTGGTGGGGTCGTGGACGGTGTGGATCCCTGCACACTTT
GTGAACTTCCGTTTTGTGCCCTCCAGCCAGCGACTGgtacgtgttctgct
ctctcaatctagctttgccccttcctcgactgatttttttttctgatgca
catcttctctctcccttcccatccccctactacacacagCTCTACATCAA
CTCCATCCAAATTGGGTACAACATCTTCTTGTCCTTCCTAGGGAACAAGA
AGGTCGATGCACCCGAGGTTGTGAAGGAGGCGGAGGGCGCCGTGACTTCG
GCGGTGGACAAGGCGAAATAGATATAAGGAAGCAAAGGTGAAGTACTTAA
GTTGCGGGAGAGAGGAGGAAAGGAGGAAAGGCAGGAAGAGAGGAAGGGAG
ATGGAAATGCAAACAAGGGTCGTGGTAAAAGGCACTTTCGGGTGGGGAGG
GGAGGTTGTGACGGTGGATGAGGAATGACGATGGTCAGAATCTGTTTGTC
ATGAGACGTTCAGGGTGTCCATGTGTGCGGGTGAGGAACATGACGATGCA
GCTGCCGCAGCAGCGGCTACAGCAACAGCAGCGGCAGTAGCAAGAGTGTG
GGGAAAAGGGTCATATGCCGGTCTAAATTATTCTGTAGGAGGATGATAAG
AAGGGGGTGGGCGGTAAAGGTAAAAAGGGTGAGTAGGGTAAGGAGATCAG
GAAAACCAAGAGGCTGCTGCTTTTCCTTGGCTGATGCTCACGTCCGAATA
AGATGGGCACACGCAACGCGACAACATCAATCAAGTGGATACTGCGAGCG
TGGCCACCGCCCCTTGACCAACATACAATGTACACAGCAAGGCCCCAAAA
AATAAAACCACCAAGCGGGAAAATCCGTGGCACCACCATTATCGGCCATG
TTCGCCATCACA
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protein sequence of NO06G00940.1

>NO06G00940.1-protein ID=NO06G00940.1-protein|Name=NO06G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MFGRLWTKYNAALETNPLLIKAMTSLTGFTLGDILAQKFVMPDEKGYDVM
RTARLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPC
FGVMFFSYLGLAEGKSFTDIQAKIKNDLTTAVVGSWTVWIPAHFVNFRFV
PSSQRLLYINSIQIGYNIFLSFLGNKKVDAPEVVKEAEGAVTSAVDKAK*
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Synonyms
Publications