NO06G00940.1, NO06G00940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00940.1
Unique NameNO06G00940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1809
Alignment locationchr6:312338..314249 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:312338..314249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G00940.1 vs.
Match: NP_001090480.1 (uncharacterized protein LOC779393 [Xenopus laevis]; AAI23161.1 MGC154358 protein [Xenopus laevis])

HSP 1 Score: 392.5 bits (1007), Expect = 7.800e-106
Identity = 191/200 (95.50%), Postives = 193/200 (96.50%), Query Frame = 0
Query:    1 MFGRLWTKYNAALETNPLLIKAMTSLTGFTLGDILAQKFVMPD-EKGYDVMRTARLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLTTAVVGSWTVWIPAHFVNFRFVPSSQRLLYINSIQIGYNIFLSFLGNKKVDAPEVVKEAEGAVTSAVDKAK 200
            MFGRLWTKYNAALETNPLLIKA+TSLTGFTLGDILAQKFVMPD EKGYD+MRT RLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSF DIQ KIKNDLTTAVVGSWTVWIPAHFVNFRFVPSSQRLLYINSIQIGYNIFLSFLGNKKVD PEVVKEAE AVTSAVDK K
Sbjct:    1 MFGRLWTKYNAALETNPLLIKAVTSLTGFTLGDILAQKFVMPDKEKGYDLMRTVRLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFADIQTKIKNDLTTAVVGSWTVWIPAHFVNFRFVPSSQRLLYINSIQIGYNIFLSFLGNKKVDEPEVVKEAEAAVTSAVDKMK 200          
The following BLAST results are available for this feature:
BLAST of NO06G00940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
NP_001090480.17.800e-10695.50uncharacterized protein LOC779393 [Xenopus laevis]... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00940NO06G00940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00940.1NO06G00940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00940.1.cds1NO06G00940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00940.1.cds2NO06G00940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00940.1 ID=NO06G00940.1|Name=NO06G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1809bp
TTGTATTGAGATCTTTCGTAGGAGACTTTCCCTTAAAAACTGCAAGGCTG
CTGCTACTTCTACTGCTACCTGTGATGTCTGCCTCCGTGGCCGACAATGT
AGAATCTGAAACGCGCTCGAGTGTGAGCGGTTGTGTTGTTGTGGTCTCGT
GGGGAAAACCCTGAGGTGAGGAGGTCATCCCCATTCTTGCCCTCTACCCC
TCTGTTTGCTGCAAGAACATCCACACGCCTCTCTCTTCCTACACACATAA
AGGGCACAAACGTGCCGTTTAGATACTCTTGCCCCCGCGTTACTTCTTCT
AGACGTCCAGCTTGGCCCGCGCGTAGTAGGGCTTCAGTCGTCAGATCCAC
CGTCCCGGCTTTTGCCTCCGCAGCTGTTGCAGTCCTTCGTACTCAACACC
ACCCGCGCGTGCTGTCCGCACATGCCCGAGCACAAGCGTATCCATGTCAT
TACGGGCCTACTGTGGTGTGGGCTTGCCAGTTTCCCTGCAGCACGTCTTG
CAAGACCGTGCTTTTAGAAATGCATCAAAAGTATCATCATGCTCCGACAT
GAATACCAACACCTTTCCACCCATTTCTCTTGTAACAGGTCACTCGCCTC
TCAAATCCCTTAGAAATCATGTTCGGACGTCTGTGGACAAAGTACAATGC
GGCATTGGAGACGAACCCTCTGCTGATCAAGGCTATGACCTCCCTCACGG
GCTTCACCCTCGGTGACATCCTCGCCCAGAAATTCGTTATGCCCGACGAG
AAGGGTTACGACGTGATGCGTACCGCCCGTCTGGGTTCCTTCGGTTTCCT
GGTTCACGGGCCCACTGGCCACTACTTCTACAGCTGGCTTGACAAGCAGA
TTCCGGGCACGGCCATGAAGACTGTTGCCACAAAGGTGGCTATCGATCAG
CTCCTTTGGAACCCATGCTTCGGCGTCATGTTCTTCTCTTACCTAGGTTT
GGCCGAGGGCAAGTCGTTTACGGACATCCAGGCCAAAATTAAGAATGATT
TGACGACGGCGGTGGTGGGGTCGTGGACGGTGTGGATCCCTGCACACTTT
GTGAACTTCCGTTTTGTGCCCTCCAGCCAGCGACTGCTCTACATCAACTC
CATCCAAATTGGGTACAACATCTTCTTGTCCTTCCTAGGGAACAAGAAGG
TCGATGCACCCGAGGTTGTGAAGGAGGCGGAGGGCGCCGTGACTTCGGCG
GTGGACAAGGCGAAATAGATATAAGGAAGCAAAGGTGAAGTACTTAAGTT
GCGGGAGAGAGGAGGAAAGGAGGAAAGGCAGGAAGAGAGGAAGGGAGATG
GAAATGCAAACAAGGGTCGTGGTAAAAGGCACTTTCGGGTGGGGAGGGGA
GGTTGTGACGGTGGATGAGGAATGACGATGGTCAGAATCTGTTTGTCATG
AGACGTTCAGGGTGTCCATGTGTGCGGGTGAGGAACATGACGATGCAGCT
GCCGCAGCAGCGGCTACAGCAACAGCAGCGGCAGTAGCAAGAGTGTGGGG
AAAAGGGTCATATGCCGGTCTAAATTATTCTGTAGGAGGATGATAAGAAG
GGGGTGGGCGGTAAAGGTAAAAAGGGTGAGTAGGGTAAGGAGATCAGGAA
AACCAAGAGGCTGCTGCTTTTCCTTGGCTGATGCTCACGTCCGAATAAGA
TGGGCACACGCAACGCGACAACATCAATCAAGTGGATACTGCGAGCGTGG
CCACCGCCCCTTGACCAACATACAATGTACACAGCAAGGCCCCAAAAAAT
AAAACCACCAAGCGGGAAAATCCGTGGCACCACCATTATCGGCCATGTTC
GCCATCACA
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protein sequence of NO06G00940.1

>NO06G00940.1-protein ID=NO06G00940.1-protein|Name=NO06G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MFGRLWTKYNAALETNPLLIKAMTSLTGFTLGDILAQKFVMPDEKGYDVM
RTARLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPC
FGVMFFSYLGLAEGKSFTDIQAKIKNDLTTAVVGSWTVWIPAHFVNFRFV
PSSQRLLYINSIQIGYNIFLSFLGNKKVDAPEVVKEAEGAVTSAVDKAK*
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mRNA from alignment at chr6:312338..314249-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00940.1 ID=NO06G00940.1|Name=NO06G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1912bp|location=Sequence derived from alignment at chr6:312338..314249- (Nannochloropsis oceanica)
TTGTATTGAGATCTTTCGTAGGAGACTTTCCCTTAAAAACTGCAAGGCTG CTGCTACTTCTACTGCTACCTGTGATGTCTGCCTCCGTGGCCGACAATGT AGAATCTGAAACGCGCTCGAGTGTGAGCGGTTGTGTTGTTGTGGTCTCGT GGGGAAAACCCTGAGGTGAGGAGGTCATCCCCATTCTTGCCCTCTACCCC TCTGTTTGCTGCAAGAACATCCACACGCCTCTCTCTTCCTACACACATAA AGGGCACAAACGTGCCGTTTAGATACTCTTGCCCCCGCGTTACTTCTTCT AGACGTCCAGCTTGGCCCGCGCGTAGTAGGGCTTCAGTCGTCAGATCCAC CGTCCCGGCTTTTGCCTCCGCAGCTGTTGCAGTCCTTCGTACTCAACACC ACCCGCGCGTGCTGTCCGCACATGCCCGAGCACAAGCGTATCCATGTCAT TACGGGCCTACTGTGGTGTGGGCTTGCCAGTTTCCCTGCAGCACGTCTTG CAAGACCGTGCTTTTAGAAATGCATCAAAAGTATCATCATGCTCCGACAT GAATACCAACACCTTTCCACCCATTTCTCTTGTAACAGGTCACTCGCCTC TCAAATCCCTTAGAAATCATGTTCGGACGTCTGTGGACAAAGTACAATGC GGCATTGGAGACGAACCCTCTGCTGATCAAGGCTATGACCTCCCTCACGG GCTTCACCCTCGGTGACATCCTCGCCCAGAAATTCGTTATGCCCGACGAG AAGGGTTACGACGTGATGCGTACCGCCCGTCTGGGTTCCTTCGGTTTCCT GGTTCACGGGCCCACTGGCCACTACTTCTACAGCTGGCTTGACAAGCAGA TTCCGGGCACGGCCATGAAGACTGTTGCCACAAAGGTGGCTATCGATCAG CTCCTTTGGAACCCATGCTTCGGCGTCATGTTCTTCTCTTACCTAGGTTT GGCCGAGGGCAAGTCGTTTACGGACATCCAGGCCAAAATTAAGAATGATT TGACGACGGCGGTGGTGGGGTCGTGGACGGTGTGGATCCCTGCACACTTT GTGAACTTCCGTTTTGTGCCCTCCAGCCAGCGACTGGTACGTGTTCTGCT CTCTCAATCTAGCTTTGCCCCTTCCTCGACTGATTTTTTTTTCTGATGCA CATCTTCTCTCTCCCTTCCCATCCCCCTACTACACACAGCTCTACATCAA CTCCATCCAAATTGGGTACAACATCTTCTTGTCCTTCCTAGGGAACAAGA AGGTCGATGCACCCGAGGTTGTGAAGGAGGCGGAGGGCGCCGTGACTTCG GCGGTGGACAAGGCGAAATAGATATAAGGAAGCAAAGGTGAAGTACTTAA GTTGCGGGAGAGAGGAGGAAAGGAGGAAAGGCAGGAAGAGAGGAAGGGAG ATGGAAATGCAAACAAGGGTCGTGGTAAAAGGCACTTTCGGGTGGGGAGG GGAGGTTGTGACGGTGGATGAGGAATGACGATGGTCAGAATCTGTTTGTC ATGAGACGTTCAGGGTGTCCATGTGTGCGGGTGAGGAACATGACGATGCA GCTGCCGCAGCAGCGGCTACAGCAACAGCAGCGGCAGTAGCAAGAGTGTG GGGAAAAGGGTCATATGCCGGTCTAAATTATTCTGTAGGAGGATGATAAG AAGGGGGTGGGCGGTAAAGGTAAAAAGGGTGAGTAGGGTAAGGAGATCAG GAAAACCAAGAGGCTGCTGCTTTTCCTTGGCTGATGCTCACGTCCGAATA AGATGGGCACACGCAACGCGACAACATCAATCAAGTGGATACTGCGAGCG TGGCCACCGCCCCTTGACCAACATACAATGTACACAGCAAGGCCCCAAAA AATAAAACCACCAAGCGGGAAAATCCGTGGCACCACCATTATCGGCCATG TTCGCCATCACA
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Coding sequence (CDS) from alignment at chr6:312338..314249-

>NO06G00940.1 ID=NO06G00940.1|Name=NO06G00940.1|organism=Nannochloropsis oceanica|type=CDS|length=600bp|location=Sequence derived from alignment at chr6:312338..314249- (Nannochloropsis oceanica)
ATGTTCGGACGTCTGTGGACAAAGTACAATGCGGCATTGGAGACGAACCC
TCTGCTGATCAAGGCTATGACCTCCCTCACGGGCTTCACCCTCGGTGACA
TCCTCGCCCAGAAATTCGTTATGCCCGACGAGAAGGGTTACGACGTGATG
CGTACCGCCCGTCTGGGTTCCTTCGGTTTCCTGGTTCACGGGCCCACTGG
CCACTACTTCTACAGCTGGCTTGACAAGCAGATTCCGGGCACGGCCATGA
AGACTGTTGCCACAAAGGTGGCTATCGATCAGCTCCTTTGGAACCCATGC
TTCGGCGTCATGTTCTTCTCTTACCTAGGTTTGGCCGAGGGCAAGTCGTT
TACGGACATCCAGGCCAAAATTAAGAATGATTTGACGACGGCGGTGGTGG
GGTCGTGGACGGTGTGGATCCCTGCACACTTTGTGAACTTCCGTTTTGTG
CCCTCCAGCCAGCGACTGCTCTACATCAACTCCATCCAAATTGGGTACAA
CATCTTCTTGTCCTTCCTAGGGAACAAGAAGGTCGATGCACCCGAGGTTG
TGAAGGAGGCGGAGGGCGCCGTGACTTCGGCGGTGGACAAGGCGAAATAG
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Synonyms
Publications