|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:312338..314249 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G00940.1 vs.
Match: NP_001090480.1 (uncharacterized protein LOC779393 [Xenopus laevis]; AAI23161.1 MGC154358 protein [Xenopus laevis]) HSP 1 Score: 392.5 bits (1007), Expect = 7.800e-106 Identity = 191/200 (95.50%), Postives = 193/200 (96.50%), Query Frame = 0
Query: 1 MFGRLWTKYNAALETNPLLIKAMTSLTGFTLGDILAQKFVMPD-EKGYDVMRTARLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLTTAVVGSWTVWIPAHFVNFRFVPSSQRLLYINSIQIGYNIFLSFLGNKKVDAPEVVKEAEGAVTSAVDKAK 200
MFGRLWTKYNAALETNPLLIKA+TSLTGFTLGDILAQKFVMPD EKGYD+MRT RLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSF DIQ KIKNDLTTAVVGSWTVWIPAHFVNFRFVPSSQRLLYINSIQIGYNIFLSFLGNKKVD PEVVKEAE AVTSAVDK K
Sbjct: 1 MFGRLWTKYNAALETNPLLIKAVTSLTGFTLGDILAQKFVMPDKEKGYDLMRTVRLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFADIQTKIKNDLTTAVVGSWTVWIPAHFVNFRFVPSSQRLLYINSIQIGYNIFLSFLGNKKVDEPEVVKEAEAAVTSAVDKMK 200
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G00940.1 ID=NO06G00940.1|Name=NO06G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1809bp TTGTATTGAGATCTTTCGTAGGAGACTTTCCCTTAAAAACTGCAAGGCTG CTGCTACTTCTACTGCTACCTGTGATGTCTGCCTCCGTGGCCGACAATGT AGAATCTGAAACGCGCTCGAGTGTGAGCGGTTGTGTTGTTGTGGTCTCGT GGGGAAAACCCTGAGGTGAGGAGGTCATCCCCATTCTTGCCCTCTACCCC TCTGTTTGCTGCAAGAACATCCACACGCCTCTCTCTTCCTACACACATAA AGGGCACAAACGTGCCGTTTAGATACTCTTGCCCCCGCGTTACTTCTTCT AGACGTCCAGCTTGGCCCGCGCGTAGTAGGGCTTCAGTCGTCAGATCCAC CGTCCCGGCTTTTGCCTCCGCAGCTGTTGCAGTCCTTCGTACTCAACACC ACCCGCGCGTGCTGTCCGCACATGCCCGAGCACAAGCGTATCCATGTCAT TACGGGCCTACTGTGGTGTGGGCTTGCCAGTTTCCCTGCAGCACGTCTTG CAAGACCGTGCTTTTAGAAATGCATCAAAAGTATCATCATGCTCCGACAT GAATACCAACACCTTTCCACCCATTTCTCTTGTAACAGGTCACTCGCCTC TCAAATCCCTTAGAAATCATGTTCGGACGTCTGTGGACAAAGTACAATGC GGCATTGGAGACGAACCCTCTGCTGATCAAGGCTATGACCTCCCTCACGG GCTTCACCCTCGGTGACATCCTCGCCCAGAAATTCGTTATGCCCGACGAG AAGGGTTACGACGTGATGCGTACCGCCCGTCTGGGTTCCTTCGGTTTCCT GGTTCACGGGCCCACTGGCCACTACTTCTACAGCTGGCTTGACAAGCAGA TTCCGGGCACGGCCATGAAGACTGTTGCCACAAAGGTGGCTATCGATCAG CTCCTTTGGAACCCATGCTTCGGCGTCATGTTCTTCTCTTACCTAGGTTT GGCCGAGGGCAAGTCGTTTACGGACATCCAGGCCAAAATTAAGAATGATT TGACGACGGCGGTGGTGGGGTCGTGGACGGTGTGGATCCCTGCACACTTT GTGAACTTCCGTTTTGTGCCCTCCAGCCAGCGACTGCTCTACATCAACTC CATCCAAATTGGGTACAACATCTTCTTGTCCTTCCTAGGGAACAAGAAGG TCGATGCACCCGAGGTTGTGAAGGAGGCGGAGGGCGCCGTGACTTCGGCG GTGGACAAGGCGAAATAGATATAAGGAAGCAAAGGTGAAGTACTTAAGTT GCGGGAGAGAGGAGGAAAGGAGGAAAGGCAGGAAGAGAGGAAGGGAGATG GAAATGCAAACAAGGGTCGTGGTAAAAGGCACTTTCGGGTGGGGAGGGGA GGTTGTGACGGTGGATGAGGAATGACGATGGTCAGAATCTGTTTGTCATG AGACGTTCAGGGTGTCCATGTGTGCGGGTGAGGAACATGACGATGCAGCT GCCGCAGCAGCGGCTACAGCAACAGCAGCGGCAGTAGCAAGAGTGTGGGG AAAAGGGTCATATGCCGGTCTAAATTATTCTGTAGGAGGATGATAAGAAG GGGGTGGGCGGTAAAGGTAAAAAGGGTGAGTAGGGTAAGGAGATCAGGAA AACCAAGAGGCTGCTGCTTTTCCTTGGCTGATGCTCACGTCCGAATAAGA TGGGCACACGCAACGCGACAACATCAATCAAGTGGATACTGCGAGCGTGG CCACCGCCCCTTGACCAACATACAATGTACACAGCAAGGCCCCAAAAAAT AAAACCACCAAGCGGGAAAATCCGTGGCACCACCATTATCGGCCATGTTC GCCATCACA back to topprotein sequence of NO06G00940.1 >NO06G00940.1-protein ID=NO06G00940.1-protein|Name=NO06G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp MFGRLWTKYNAALETNPLLIKAMTSLTGFTLGDILAQKFVMPDEKGYDVM RTARLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPC FGVMFFSYLGLAEGKSFTDIQAKIKNDLTTAVVGSWTVWIPAHFVNFRFV PSSQRLLYINSIQIGYNIFLSFLGNKKVDAPEVVKEAEGAVTSAVDKAK* back to topmRNA from alignment at chr6:312338..314249- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G00940.1 ID=NO06G00940.1|Name=NO06G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1912bp|location=Sequence derived from alignment at chr6:312338..314249- (Nannochloropsis oceanica) TTGTATTGAGATCTTTCGTAGGAGACTTTCCCTTAAAAACTGCAAGGCTG
CTGCTACTTCTACTGCTACCTGTGATGTCTGCCTCCGTGGCCGACAATGT
AGAATCTGAAACGCGCTCGAGTGTGAGCGGTTGTGTTGTTGTGGTCTCGT
GGGGAAAACCCTGAGGTGAGGAGGTCATCCCCATTCTTGCCCTCTACCCC
TCTGTTTGCTGCAAGAACATCCACACGCCTCTCTCTTCCTACACACATAA
AGGGCACAAACGTGCCGTTTAGATACTCTTGCCCCCGCGTTACTTCTTCT
AGACGTCCAGCTTGGCCCGCGCGTAGTAGGGCTTCAGTCGTCAGATCCAC
CGTCCCGGCTTTTGCCTCCGCAGCTGTTGCAGTCCTTCGTACTCAACACC
ACCCGCGCGTGCTGTCCGCACATGCCCGAGCACAAGCGTATCCATGTCAT
TACGGGCCTACTGTGGTGTGGGCTTGCCAGTTTCCCTGCAGCACGTCTTG
CAAGACCGTGCTTTTAGAAATGCATCAAAAGTATCATCATGCTCCGACAT
GAATACCAACACCTTTCCACCCATTTCTCTTGTAACAGGTCACTCGCCTC
TCAAATCCCTTAGAAATCATGTTCGGACGTCTGTGGACAAAGTACAATGC
GGCATTGGAGACGAACCCTCTGCTGATCAAGGCTATGACCTCCCTCACGG
GCTTCACCCTCGGTGACATCCTCGCCCAGAAATTCGTTATGCCCGACGAG
AAGGGTTACGACGTGATGCGTACCGCCCGTCTGGGTTCCTTCGGTTTCCT
GGTTCACGGGCCCACTGGCCACTACTTCTACAGCTGGCTTGACAAGCAGA
TTCCGGGCACGGCCATGAAGACTGTTGCCACAAAGGTGGCTATCGATCAG
CTCCTTTGGAACCCATGCTTCGGCGTCATGTTCTTCTCTTACCTAGGTTT
GGCCGAGGGCAAGTCGTTTACGGACATCCAGGCCAAAATTAAGAATGATT
TGACGACGGCGGTGGTGGGGTCGTGGACGGTGTGGATCCCTGCACACTTT
GTGAACTTCCGTTTTGTGCCCTCCAGCCAGCGACTGGTACGTGTTCTGCT
CTCTCAATCTAGCTTTGCCCCTTCCTCGACTGATTTTTTTTTCTGATGCA
CATCTTCTCTCTCCCTTCCCATCCCCCTACTACACACAGCTCTACATCAA
CTCCATCCAAATTGGGTACAACATCTTCTTGTCCTTCCTAGGGAACAAGA
AGGTCGATGCACCCGAGGTTGTGAAGGAGGCGGAGGGCGCCGTGACTTCG
GCGGTGGACAAGGCGAAATAGATATAAGGAAGCAAAGGTGAAGTACTTAA
GTTGCGGGAGAGAGGAGGAAAGGAGGAAAGGCAGGAAGAGAGGAAGGGAG
ATGGAAATGCAAACAAGGGTCGTGGTAAAAGGCACTTTCGGGTGGGGAGG
GGAGGTTGTGACGGTGGATGAGGAATGACGATGGTCAGAATCTGTTTGTC
ATGAGACGTTCAGGGTGTCCATGTGTGCGGGTGAGGAACATGACGATGCA
GCTGCCGCAGCAGCGGCTACAGCAACAGCAGCGGCAGTAGCAAGAGTGTG
GGGAAAAGGGTCATATGCCGGTCTAAATTATTCTGTAGGAGGATGATAAG
AAGGGGGTGGGCGGTAAAGGTAAAAAGGGTGAGTAGGGTAAGGAGATCAG
GAAAACCAAGAGGCTGCTGCTTTTCCTTGGCTGATGCTCACGTCCGAATA
AGATGGGCACACGCAACGCGACAACATCAATCAAGTGGATACTGCGAGCG
TGGCCACCGCCCCTTGACCAACATACAATGTACACAGCAAGGCCCCAAAA
AATAAAACCACCAAGCGGGAAAATCCGTGGCACCACCATTATCGGCCATG
TTCGCCATCACA back to topCoding sequence (CDS) from alignment at chr6:312338..314249- >NO06G00940.1 ID=NO06G00940.1|Name=NO06G00940.1|organism=Nannochloropsis oceanica|type=CDS|length=600bp|location=Sequence derived from alignment at chr6:312338..314249- (Nannochloropsis oceanica) ATGTTCGGACGTCTGTGGACAAAGTACAATGCGGCATTGGAGACGAACCC TCTGCTGATCAAGGCTATGACCTCCCTCACGGGCTTCACCCTCGGTGACA TCCTCGCCCAGAAATTCGTTATGCCCGACGAGAAGGGTTACGACGTGATG CGTACCGCCCGTCTGGGTTCCTTCGGTTTCCTGGTTCACGGGCCCACTGG CCACTACTTCTACAGCTGGCTTGACAAGCAGATTCCGGGCACGGCCATGA AGACTGTTGCCACAAAGGTGGCTATCGATCAGCTCCTTTGGAACCCATGC TTCGGCGTCATGTTCTTCTCTTACCTAGGTTTGGCCGAGGGCAAGTCGTT TACGGACATCCAGGCCAAAATTAAGAATGATTTGACGACGGCGGTGGTGG GGTCGTGGACGGTGTGGATCCCTGCACACTTTGTGAACTTCCGTTTTGTG CCCTCCAGCCAGCGACTGCTCTACATCAACTCCATCCAAATTGGGTACAA CATCTTCTTGTCCTTCCTAGGGAACAAGAAGGTCGATGCACCCGAGGTTG TGAAGGAGGCGGAGGGCGCCGTGACTTCGGCGGTGGACAAGGCGAAATAG back to top
|