NO06G00290, NO06G00290 (gene) Nannochloropsis oceanica

Overview
NameNO06G00290
Unique NameNO06G00290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1080
Alignment locationchr6:125243..126322 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:125243..126322 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO06G00290 vs. NCBI_GenBank
Match: EWM26485.1 (Neuraminidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 107.5 bits (267), Expect = 5.100e-20
Identity = 80/201 (39.80%), Postives = 104/201 (51.74%), Query Frame = 0
Query:    1 MRRALSLVALGVTLALTAAETA-PTLILTSIKAVDTTRANKDQWSVKGYFNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGADEISDINYKCTE--KVGTRATKFLCTPGTAPPTAAPT 198
            MR ALSL+ LGVT   T   TA   L L SI+ VD +  NKD W +KG  NDP    + A G TGLT  L +   D ++   F A DCR+  + +   CK+ GAR+S+K T R PK    +    ++  +   YY V+G FR   F EN + SPL AA  I G+  +SD    C +  +   R T   C PG  PP   PT
Sbjct:    1 MRSALSLLVLGVTFGSTLVPTAGQDLNLKSIRTVDRSVTNKDTWKMKGNINDPSLTIVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRATCKIRGARVSIK-TSRRPKVKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRINGS-VLSDTLTSCYDLARKSGRNTISHCEPG--PPAPTPT 197          
BLAST of NO06G00290 vs. NCBI_GenBank
Match: EWM27399.1 (hypothetical protein Naga_100212g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 105.9 bits (263), Expect = 1.500e-19
Identity = 78/201 (38.81%), Postives = 104/201 (51.74%), Query Frame = 0
Query:    1 MRRALSLVALGVTLALTAAETA-PTLILTSIKAVDTTRANKDQWSVKGYFNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGA--DEISDINYKCTEKVGTRATKFLCTPGTAPPTAAPT 198
            MR  LSL+ALG+TL  T   TA   L L SI+AVD +  NKD W +KG  NDP    + A G  GLT  L +   D ++   F A DCR+  + +   CK+ GAR+S+K T R PK    +    ++  +   YY V+G FR   F EN + SPL AA  ++ +   +   + Y    K G R T   C PG  PP   PT
Sbjct:    1 MRSTLSLLALGITLGSTLVTTAGQDLNLKSIRAVDRSVTNKDTWKMKGSINDPSLTIVSAIGQKGLTVELQDAATDPLNTVTFAASDCRVPAHGRRAACKIRGARVSIK-TSRRPKIKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALTVDESVLSDTLTLCYNLPRKNG-RNTISHCEPG--PPVPTPT 197          
BLAST of NO06G00290 vs. NCBI_GenBank
Match: EWM20135.1 (hypothetical protein Naga_101626g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 104.4 bits (259), Expect = 4.300e-19
Identity = 70/190 (36.84%), Postives = 106/190 (55.79%), Query Frame = 0
Query:    1 MRRALSLVALGVTLALTAAETAPTLILTSIKAVDTTRANKDQWSVKGYFNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGADEISDINYKCTE--KVGTRATKFLCTP 188
            MR  LSL+ALG+TL +TA +      L +IK     +  +DQWS+KG  ++P  N +   G +GLT  L + +   ++   F A +C+LL N +GV CK  GAR+ +KRT+R PK A +   ++ +  +   YY  SG+FRR +F ++T+ +PL     + G   +  I   C+E  K   R TK  CTP
Sbjct:    1 MRCILSLLALGITLVMTAGQ---EFTLKNIKVAGRFKTARDQWSMKGNLDNPTMNVVPVIGQSGLTVNLLDASLSPLASAAFAATNCKLLRNARGVSCKSMGARVYIKRTRR-PKAAKV---KSSSYNSTGGYYAASGMFRRLQFLQDTVVTPLTVQL-VVGTTTLPAIVSTCSERTKSAGRITKITCTP 182          
BLAST of NO06G00290 vs. NCBI_GenBank
Match: EWM27397.1 (hypothetical protein Naga_101181g1 [Nannochloropsis gaditana])

HSP 1 Score: 100.5 bits (249), Expect = 6.200e-18
Identity = 74/197 (37.56%), Postives = 99/197 (50.25%), Query Frame = 0
Query:    1 MRRALSLVALGVTLALT-AAETAPTLILTSIKAVDTTRANKDQWSVKGYFNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGADEISDINYKCTE--KVGTRATKFLCTPGTAPPT 194
            MR  LSL+ALG+TL  T    T  +L L SI+AVD +  NKD W +KG  NDP    +   G  GLT  L +   D ++   F A DCR+  + K   CK+ GAR+ +K ++R   +    V   R  +T   YY V+G FRR  F EN + SPL AA  +     +SD    C +  +   R     C PG   PT
Sbjct:   69 MRSTLSLLALGITLGSTLVTTTGQSLNLKSIRAVDRSVTNKDTWKMKGSINDPSLTIVPTIGQKGLTVELQDATTDLLNTVTFAARDCRVPAHGKRAACKIRGARVFIKTSRRPKINTPKTVHAKRYNST-GGYYSVTGTFRRLTFLENPVVSPLTAALTV-NESVLSDTLTSCYDLPRKNGRNPITHCEPGPPVPT 263          
BLAST of NO06G00290 vs. NCBI_GenBank
Match: EWM20775.1 (hypothetical protein Naga_100549g2 [Nannochloropsis gaditana])

HSP 1 Score: 100.1 bits (248), Expect = 8.100e-18
Identity = 72/204 (35.29%), Postives = 102/204 (50.00%), Query Frame = 0
Query:    1 MRRALSLVALGVTLALTAAETA-PTLILTSIKAVDTTRANKDQWSVKGYFNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGADEISDINYKCTE--KVGTRATKFLCTPGTAPPTAAPTSGP 201
            MR A S +A+G+T   +   TA   L L SI+AVD + ANKD W +KG  +DP    +     TGL   L +G  D ++   F A DCR+  N +   CK+ GAR+S+K ++R PK    +    +   +   YYRV+G  R   F E+ + SPL A   + G D +SD    C +  ++  R T   C PG   PT      P
Sbjct:    1 MRSAFSFLAVGITFGSSLVTTAGQDLNLKSIRAVDRSVANKDTWKMKGKIDDPSMTIVPEIAQTGLIVELQDGGSDPLNTVTFAASDCRVPTNGRRATCKIRGARVSIKSSRR-PKLKTPKTVHAKTYNSTGGYYRVTGACRGLTFLEDLVLSPLTAKLTVNG-DVLSDTLTSCYDLPRMNGRNTITHCEPGPPVPTPGXXPSP 202          
BLAST of NO06G00290 vs. NCBI_GenBank
Match: EWM25644.1 (hypothetical protein Naga_100037g5 [Nannochloropsis gaditana])

HSP 1 Score: 95.9 bits (237), Expect = 1.500e-16
Identity = 55/156 (35.26%), Postives = 86/156 (55.13%), Query Frame = 0
Query:   37 RANKDQWSVKGYFNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGADE----ISDINYKCTE--KVGTRATKFLC 186
            +A +D+W++ G+FNDP   A++  G  G+ A+L +  +  +S T F    C+ LNN +GV CK TGARL LK+T    KD  +     RN ++  ++Y+V GVFRR  F +  + +PL   F ++  +      +    +CTE  K G + TK  C
Sbjct:  163 KAKRDRWTITGFFNDPAETAVVNIGQYGIIAVLQDAAKKALSSTFFTPPQCKALNNIRGVTCKTTGARLRLKKT----KDPSV-----RNKSSEGAFYKVKGVFRRLTFLQQPVQTPLTTIFAVQFPNTTTVFTTSATEQCTEKGKTGGKKTKIDC 309          
BLAST of NO06G00290 vs. NCBI_GenBank
Match: XP_005854458.1 (glycosyl hydrolase [Nannochloropsis gaditana CCMP526] >EKU21904.1 glycosyl hydrolase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 73.6 bits (179), Expect = 8.100e-10
Identity = 52/152 (34.21%), Postives = 75/152 (49.34%), Query Frame = 0
Query:   45 VKGYFNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGADEISDINYKCTE--KVGTRATKFLCTPGTAPPT 194
            +KG  +DP    + A   TGLT  L +   D ++   F A DCR+  + +   CK+ GAR+S+K T R PK    +    ++  +   YY V+G FR   F EN + SPL AA  + G+  +SD    C +  +   R T   C PG   PT
Sbjct:    1 MKGSISDPSLTIVSAIRQTGLTVELQDAATDPLNTVTFAASDCRVPAHGRRAACKIRGARVSIK-TSRRPKIKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLAAALRVNGS-VLSDTLTSCYDLARKSGRNTITHCEPGPLVPT 150          
The following BLAST results are available for this feature:
BLAST of NO06G00290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 17
Match NameE-valueIdentityDescription
EWM26485.15.100e-2039.80Neuraminidase, partial [Nannochloropsis gaditana][more]
EWM27399.11.500e-1938.81hypothetical protein Naga_100212g1, partial [Nanno... [more]
EWM20135.14.300e-1936.84hypothetical protein Naga_101626g1, partial [Nanno... [more]
EWM27397.16.200e-1837.56hypothetical protein Naga_101181g1 [Nannochloropsi... [more]
EWM20775.18.100e-1835.29hypothetical protein Naga_100549g2 [Nannochloropsi... [more]
EWM25644.11.500e-1635.26hypothetical protein Naga_100037g5 [Nannochloropsi... [more]
XP_005854458.18.100e-1034.21glycosyl hydrolase [Nannochloropsis gaditana CCMP5... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00290.1NO06G00290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00290.1NO06G00290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00290 ID=NO06G00290|Name=NO06G00290|organism=Nannochloropsis oceanica|type=gene|length=1080bp
CAGGAAATAAGCCTTTCTTCGCGATACAATATGCGTCGCGCTCTTTCTCT
GGTTGCCCTTGGCGTCACACTCGCCCTCACGGCGGCTGAGACTGCGCCGA
CGTTGATTCTTACCTCCATCAAGGCAGTTGACACGACCAGGGCAAACAAG
GACCAATGGAGTGTCAAGGGCTACTTCAACGATCCTGATGGGAATGCTAT
CCTGGCCTTTGGTGACACTGGCTTGACCGCGCTGCTTGCAAACGGGAACG
AAGACACAGTGAGTGAAACGGACTTTGACGCGGATGATTGCAGACTGCTC
AACAACGATAAGGGAGTCATTTGCAAGGTAACGGGCGCCCGCCTCTCGCT
CAAGAGGACTAAGAGAGTACCCAAGGACGCCATGCTGGAGGTGCAGAGGA
ACCGCAACACGACCACCGCCTCTTCCTACTACAGGGTTTCGGGTGTTTTC
CGCCGTCAGGAGTTCGAAAACACTCTTTCGTCGCCTCTGATTGCTGCCTT
CGGCATTGAAGGCGCAGATGAGATCTCTGATATCAATTATAAGTGCACTG
AGAAAGTAGGAACCAGGGCCACCAAGTTCCTCTGCACGCCTGGCACCGCC
CCGCCTACTGCTGCCCCTACTTCTGGTCCACCCTAGAGGTGGTCGTGTGG
TAGTTAAGCATCCATTTGGCTTCCCACCCTCGCAAGGGACGCTATAAGTC
CTGTTGTGTCTTGTGTACGTGTGTGTCTTGTATACCCTTTTTCAGTGTGG
AAGCCTCAGCTTTCATTCATGATTGACACGTCGGTTTGTCCATGTGCGTG
ACAATGTGTCTGGCTGTCGTGTCGTGTGTATGTGTTGTGTATGTGTTGTG
TATGTGTTGTGTTTTGTATGTGTACATTGTTTTGCTTGAGCACAACTAAG
TTTTGGGGGTGAGCTTCTTGTACTGCAAAGGTTCTGGCCTATTTCGGAGT
TCCCCTTTGTAGCCTTGGGTTCTACTGCATCAAGCTTCCAAACAAGAAAG
AAAATCAGACGCGTATTTGTGACAAAGCTAGTAGAGCTGTGCGAGTAAAC
ACCGCAACAATCAATTTCTTTTGTACAACG
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protein sequence of NO06G00290.1

>NO06G00290.1-protein ID=NO06G00290.1-protein|Name=NO06G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MRRALSLVALGVTLALTAAETAPTLILTSIKAVDTTRANKDQWSVKGYFN
DPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKV
TGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEFENTLS
SPLIAAFGIEGADEISDINYKCTEKVGTRATKFLCTPGTAPPTAAPTSGP
P*
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Synonyms
Publications