NO06G00290.1, NO06G00290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00290.1
Unique NameNO06G00290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1080
Alignment locationchr6:125243..126322 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:125243..126322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G00290.1 vs.
Match: EWM30045.1 (hypothetical protein Naga_101600g1 [Nannochloropsis gaditana])

HSP 1 Score: 128.6 bits (322), Expect = 2.100e-26
Identity = 83/206 (40.29%), Postives = 121/206 (58.74%), Query Frame = 0
Query:    1 MRRALSLVALGVTLALTAAETAPTLILTSIKAVDTTRANKDQWSVKGYFNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEFENTLSSPLIAAFGIE---GADEISDINYKCTE--KVGTRATKFLCTPGTAPPTAAPTSGPP 202
            MRR LSL+ALGVTL +TA +      L ++K  + ++  +DQWS+KG  ++P  N + A G  GLT  L + + D ++ T F A +C+LL N +GV CK  GAR+S+KRT+R PK A +   ++ N+ +   YY  SG+FRR +F   L  P++    ++   G+  +  I   C+E  K   R TK  CTPG AP T APT+  P
Sbjct:    1 MRRILSLLALGVTLVMTAGQE---FTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRR-PKGAKV---KSSNSNSTGGYYGASGMFRRLQF---LQDPVVTPLTVQVVVGSTTLPAIVSTCSERTKGAGRITKITCTPGPAPVTPAPTAASP 196          
The following BLAST results are available for this feature:
BLAST of NO06G00290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30045.12.100e-2640.29hypothetical protein Naga_101600g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00290NO06G00290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00290.1NO06G00290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00290.1.cds1NO06G00290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00290.1 ID=NO06G00290.1|Name=NO06G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1080bp
CAGGAAATAAGCCTTTCTTCGCGATACAATATGCGTCGCGCTCTTTCTCT
GGTTGCCCTTGGCGTCACACTCGCCCTCACGGCGGCTGAGACTGCGCCGA
CGTTGATTCTTACCTCCATCAAGGCAGTTGACACGACCAGGGCAAACAAG
GACCAATGGAGTGTCAAGGGCTACTTCAACGATCCTGATGGGAATGCTAT
CCTGGCCTTTGGTGACACTGGCTTGACCGCGCTGCTTGCAAACGGGAACG
AAGACACAGTGAGTGAAACGGACTTTGACGCGGATGATTGCAGACTGCTC
AACAACGATAAGGGAGTCATTTGCAAGGTAACGGGCGCCCGCCTCTCGCT
CAAGAGGACTAAGAGAGTACCCAAGGACGCCATGCTGGAGGTGCAGAGGA
ACCGCAACACGACCACCGCCTCTTCCTACTACAGGGTTTCGGGTGTTTTC
CGCCGTCAGGAGTTCGAAAACACTCTTTCGTCGCCTCTGATTGCTGCCTT
CGGCATTGAAGGCGCAGATGAGATCTCTGATATCAATTATAAGTGCACTG
AGAAAGTAGGAACCAGGGCCACCAAGTTCCTCTGCACGCCTGGCACCGCC
CCGCCTACTGCTGCCCCTACTTCTGGTCCACCCTAGAGGTGGTCGTGTGG
TAGTTAAGCATCCATTTGGCTTCCCACCCTCGCAAGGGACGCTATAAGTC
CTGTTGTGTCTTGTGTACGTGTGTGTCTTGTATACCCTTTTTCAGTGTGG
AAGCCTCAGCTTTCATTCATGATTGACACGTCGGTTTGTCCATGTGCGTG
ACAATGTGTCTGGCTGTCGTGTCGTGTGTATGTGTTGTGTATGTGTTGTG
TATGTGTTGTGTTTTGTATGTGTACATTGTTTTGCTTGAGCACAACTAAG
TTTTGGGGGTGAGCTTCTTGTACTGCAAAGGTTCTGGCCTATTTCGGAGT
TCCCCTTTGTAGCCTTGGGTTCTACTGCATCAAGCTTCCAAACAAGAAAG
AAAATCAGACGCGTATTTGTGACAAAGCTAGTAGAGCTGTGCGAGTAAAC
ACCGCAACAATCAATTTCTTTTGTACAACG
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protein sequence of NO06G00290.1

>NO06G00290.1-protein ID=NO06G00290.1-protein|Name=NO06G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MRRALSLVALGVTLALTAAETAPTLILTSIKAVDTTRANKDQWSVKGYFN
DPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKV
TGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEFENTLS
SPLIAAFGIEGADEISDINYKCTEKVGTRATKFLCTPGTAPPTAAPTSGP
P*
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mRNA from alignment at chr6:125243..126322+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00290.1 ID=NO06G00290.1|Name=NO06G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1080bp|location=Sequence derived from alignment at chr6:125243..126322+ (Nannochloropsis oceanica)
CAGGAAATAAGCCTTTCTTCGCGATACAATATGCGTCGCGCTCTTTCTCT GGTTGCCCTTGGCGTCACACTCGCCCTCACGGCGGCTGAGACTGCGCCGA CGTTGATTCTTACCTCCATCAAGGCAGTTGACACGACCAGGGCAAACAAG GACCAATGGAGTGTCAAGGGCTACTTCAACGATCCTGATGGGAATGCTAT CCTGGCCTTTGGTGACACTGGCTTGACCGCGCTGCTTGCAAACGGGAACG AAGACACAGTGAGTGAAACGGACTTTGACGCGGATGATTGCAGACTGCTC AACAACGATAAGGGAGTCATTTGCAAGGTAACGGGCGCCCGCCTCTCGCT CAAGAGGACTAAGAGAGTACCCAAGGACGCCATGCTGGAGGTGCAGAGGA ACCGCAACACGACCACCGCCTCTTCCTACTACAGGGTTTCGGGTGTTTTC CGCCGTCAGGAGTTCGAAAACACTCTTTCGTCGCCTCTGATTGCTGCCTT CGGCATTGAAGGCGCAGATGAGATCTCTGATATCAATTATAAGTGCACTG AGAAAGTAGGAACCAGGGCCACCAAGTTCCTCTGCACGCCTGGCACCGCC CCGCCTACTGCTGCCCCTACTTCTGGTCCACCCTAGAGGTGGTCGTGTGG TAGTTAAGCATCCATTTGGCTTCCCACCCTCGCAAGGGACGCTATAAGTC CTGTTGTGTCTTGTGTACGTGTGTGTCTTGTATACCCTTTTTCAGTGTGG AAGCCTCAGCTTTCATTCATGATTGACACGTCGGTTTGTCCATGTGCGTG ACAATGTGTCTGGCTGTCGTGTCGTGTGTATGTGTTGTGTATGTGTTGTG TATGTGTTGTGTTTTGTATGTGTACATTGTTTTGCTTGAGCACAACTAAG TTTTGGGGGTGAGCTTCTTGTACTGCAAAGGTTCTGGCCTATTTCGGAGT TCCCCTTTGTAGCCTTGGGTTCTACTGCATCAAGCTTCCAAACAAGAAAG AAAATCAGACGCGTATTTGTGACAAAGCTAGTAGAGCTGTGCGAGTAAAC ACCGCAACAATCAATTTCTTTTGTACAACG
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Coding sequence (CDS) from alignment at chr6:125243..126322+

>NO06G00290.1 ID=NO06G00290.1|Name=NO06G00290.1|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at chr6:125243..126322+ (Nannochloropsis oceanica)
ATGCGTCGCGCTCTTTCTCTGGTTGCCCTTGGCGTCACACTCGCCCTCAC
GGCGGCTGAGACTGCGCCGACGTTGATTCTTACCTCCATCAAGGCAGTTG
ACACGACCAGGGCAAACAAGGACCAATGGAGTGTCAAGGGCTACTTCAAC
GATCCTGATGGGAATGCTATCCTGGCCTTTGGTGACACTGGCTTGACCGC
GCTGCTTGCAAACGGGAACGAAGACACAGTGAGTGAAACGGACTTTGACG
CGGATGATTGCAGACTGCTCAACAACGATAAGGGAGTCATTTGCAAGGTA
ACGGGCGCCCGCCTCTCGCTCAAGAGGACTAAGAGAGTACCCAAGGACGC
CATGCTGGAGGTGCAGAGGAACCGCAACACGACCACCGCCTCTTCCTACT
ACAGGGTTTCGGGTGTTTTCCGCCGTCAGGAGTTCGAAAACACTCTTTCG
TCGCCTCTGATTGCTGCCTTCGGCATTGAAGGCGCAGATGAGATCTCTGA
TATCAATTATAAGTGCACTGAGAAAGTAGGAACCAGGGCCACCAAGTTCC
TCTGCACGCCTGGCACCGCCCCGCCTACTGCTGCCCCTACTTCTGGTCCA
CCCTAG
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Synonyms
Publications