NO06G00250, NO06G00250 (gene) Nannochloropsis oceanica

Overview
NameNO06G00250
Unique NameNO06G00250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1899
Alignment locationchr6:108445..110343 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:108445..110343 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO06G00250 vs. NCBI_GenBank
Match: EWM26484.1 (Neuraminidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 107.1 bits (266), Expect = 7.900e-20
Identity = 76/192 (39.58%), Postives = 101/192 (52.60%), Query Frame = 0
Query:   30 MRRALSLVALGVTLALTAAETA-PTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGADEISDINYKCTE--KVGTRATKFLCTPG 218
            MR ALSL+ LGVT   T   TA   L L SI+ VD +  NKD W +KG +NDP    + A G TGLT  L +   D ++   F A DCR+  + +   CK+ GAR+S+K T R PK    +    ++  +   YY V+G FR   F EN + SPL AA  I G+  +SD    C +  +   R T   C PG
Sbjct:    1 MRSALSLLVLGVTFGSTLVPTAGQDLNLKSIRTVDRSVTNKDTWKMKGNINDPSLTIVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRATCKIRGARVSIK-TSRRPKVKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRINGS-VLSDTLTSCYDLARKSGRNTISHCEPG 190          
BLAST of NO06G00250 vs. NCBI_GenBank
Match: EWM26485.1 (Neuraminidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 107.1 bits (266), Expect = 7.900e-20
Identity = 76/192 (39.58%), Postives = 101/192 (52.60%), Query Frame = 0
Query:   30 MRRALSLVALGVTLALTAAETA-PTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGADEISDINYKCTE--KVGTRATKFLCTPG 218
            MR ALSL+ LGVT   T   TA   L L SI+ VD +  NKD W +KG +NDP    + A G TGLT  L +   D ++   F A DCR+  + +   CK+ GAR+S+K T R PK    +    ++  +   YY V+G FR   F EN + SPL AA  I G+  +SD    C +  +   R T   C PG
Sbjct:    1 MRSALSLLVLGVTFGSTLVPTAGQDLNLKSIRTVDRSVTNKDTWKMKGNINDPSLTIVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRATCKIRGARVSIK-TSRRPKVKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRINGS-VLSDTLTSCYDLARKSGRNTISHCEPG 190          
BLAST of NO06G00250 vs. NCBI_GenBank
Match: EWM27399.1 (hypothetical protein Naga_100212g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 105.1 bits (261), Expect = 3.000e-19
Identity = 74/192 (38.54%), Postives = 101/192 (52.60%), Query Frame = 0
Query:   30 MRRALSLVALGVTLALTAAETA-PTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGA--DEISDINYKCTEKVGTRATKFLCTPG 218
            MR  LSL+ALG+TL  T   TA   L L SI+AVD +  NKD W +KG +NDP    + A G  GLT  L +   D ++   F A DCR+  + +   CK+ GAR+S+K T R PK    +    ++  +   YY V+G FR   F EN + SPL AA  ++ +   +   + Y    K G R T   C PG
Sbjct:    1 MRSTLSLLALGITLGSTLVTTAGQDLNLKSIRAVDRSVTNKDTWKMKGSINDPSLTIVSAIGQKGLTVELQDAATDPLNTVTFAASDCRVPAHGRRAACKIRGARVSIK-TSRRPKIKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALTVDESVLSDTLTLCYNLPRKNG-RNTISHCEPG 190          
BLAST of NO06G00250 vs. NCBI_GenBank
Match: EWM20775.1 (hypothetical protein Naga_100549g2 [Nannochloropsis gaditana])

HSP 1 Score: 101.3 bits (251), Expect = 4.300e-18
Identity = 69/192 (35.94%), Postives = 100/192 (52.08%), Query Frame = 0
Query:   30 MRRALSLVALGVTLALTAAETA-PTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGADEISDINYKCTE--KVGTRATKFLCTPG 218
            MR A S +A+G+T   +   TA   L L SI+AVD + ANKD W +KG ++DP    +     TGL   L +G  D ++   F A DCR+  N +   CK+ GAR+S+K ++R PK    +    +   +   YYRV+G  R   F E+ + SPL A   + G D +SD    C +  ++  R T   C PG
Sbjct:    1 MRSAFSFLAVGITFGSSLVTTAGQDLNLKSIRAVDRSVANKDTWKMKGKIDDPSMTIVPEIAQTGLIVELQDGGSDPLNTVTFAASDCRVPTNGRRATCKIRGARVSIKSSRR-PKLKTPKTVHAKTYNSTGGYYRVTGACRGLTFLEDLVLSPLTAKLTVNG-DVLSDTLTSCYDLPRMNGRNTITHCEPG 190          
BLAST of NO06G00250 vs. NCBI_GenBank
Match: EWM27397.1 (hypothetical protein Naga_101181g1 [Nannochloropsis gaditana])

HSP 1 Score: 100.5 bits (249), Expect = 7.400e-18
Identity = 65/161 (40.37%), Postives = 88/161 (54.66%), Query Frame = 0
Query:   30 MRRALSLVALGVTLALT-AAETAPTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGI 189
            MR  LSL+ALG+TL  T    T  +L L SI+AVD +  NKD W +KG +NDP    +   G  GLT  L +   D ++   F A DCR+  + K   CK+ GAR+ +K ++R   +    V   R  +T   YY V+G FRR  F EN + SPL AA  +
Sbjct:   69 MRSTLSLLALGITLGSTLVTTTGQSLNLKSIRAVDRSVTNKDTWKMKGSINDPSLTIVPTIGQKGLTVELQDATTDLLNTVTFAARDCRVPAHGKRAACKIRGARVFIKTSRRPKINTPKTVHAKRYNST-GGYYSVTGTFRRLTFLENPVVSPLTAALTV 228          
BLAST of NO06G00250 vs. NCBI_GenBank
Match: EWM25644.1 (hypothetical protein Naga_100037g5 [Nannochloropsis gaditana])

HSP 1 Score: 93.2 bits (230), Expect = 1.200e-15
Identity = 54/156 (34.62%), Postives = 85/156 (54.49%), Query Frame = 0
Query:   66 RANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGADE----ISDINYKCTE--KVGTRATKFLC 215
            +A +D+W++ G+ NDP   A++  G  G+ A+L +  +  +S T F    C+ LNN +GV CK TGARL LK+T    KD  +     RN ++  ++Y+V GVFRR  F +  + +PL   F ++  +      +    +CTE  K G + TK  C
Sbjct:  163 KAKRDRWTITGFFNDPAETAVVNIGQYGIIAVLQDAAKKALSSTFFTPPQCKALNNIRGVTCKTTGARLRLKKT----KDPSV-----RNKSSEGAFYKVKGVFRRLTFLQQPVQTPLTTIFAVQFPNTTTVFTTSATEQCTEKGKTGGKKTKIDC 309          
BLAST of NO06G00250 vs. NCBI_GenBank
Match: XP_005854458.1 (glycosyl hydrolase [Nannochloropsis gaditana CCMP526] >EKU21904.1 glycosyl hydrolase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 73.2 bits (178), Expect = 1.300e-9
Identity = 50/147 (34.01%), Postives = 74/147 (50.34%), Query Frame = 0
Query:   74 VKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGADEISDINYKCTE--KVGTRATKFLCTPG 218
            +KG ++DP    + A   TGLT  L +   D ++   F A DCR+  + +   CK+ GAR+S+K T R PK    +    ++  +   YY V+G FR   F EN + SPL AA  + G+  +SD    C +  +   R T   C PG
Sbjct:    1 MKGSISDPSLTIVSAIRQTGLTVELQDAATDPLNTVTFAASDCRVPAHGRRAACKIRGARVSIK-TSRRPKIKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLAAALRVNGS-VLSDTLTSCYDLARKSGRNTITHCEPG 145          
The following BLAST results are available for this feature:
BLAST of NO06G00250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 17
Match NameE-valueIdentityDescription
EWM26484.17.900e-2039.58Neuraminidase, partial [Nannochloropsis gaditana][more]
EWM26485.17.900e-2039.58Neuraminidase, partial [Nannochloropsis gaditana][more]
EWM27399.13.000e-1938.54hypothetical protein Naga_100212g1, partial [Nanno... [more]
EWM20775.14.300e-1835.94hypothetical protein Naga_100549g2 [Nannochloropsi... [more]
EWM27397.17.400e-1840.37hypothetical protein Naga_101181g1 [Nannochloropsi... [more]
EWM25644.11.200e-1534.62hypothetical protein Naga_100037g5 [Nannochloropsi... [more]
XP_005854458.11.300e-934.01glycosyl hydrolase [Nannochloropsis gaditana CCMP5... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00250.1NO06G00250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00250.1NO06G00250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00250 ID=NO06G00250|Name=NO06G00250|organism=Nannochloropsis oceanica|type=gene|length=1899bp
CGAAAAACCAAATAAACACACGAGTTACCCTCTCCTCTTTCTCCGTTGCA
TTTGCAAAAAATTGATCCCTTACTCTTCGTCTAGTGTGCTTTTATTCCCC
CCTAGTTTATTGTGTTTGTCAAAGTTTGTTGTCGGTCTCTTCGGGGCAAT
GGCTTTTAACGCCTTGCAGGACGCGACCAACCTTTTCGTGTAACGTGTAA
TTCCTGCGGTGGAGCGGCCTTGGTTATCCATTTCTAGACGCATATTCGGT
GCGGGGCGACCCCTAGTCTCACCCTTCCTCTTCTAGTATGACCTATGCCT
GACATGGTCGAGGAACTGCGGTCGACGCCGAGAGTGTGGTTGTTTGTGCC
AAGATGACAGATCTGTGAGTTACAACGGGTGTGCAGCGGTGCGAGGCGAC
GTTAAGGGCCCATGTGGCGGCCGCGCGCACCCGTCCCAGAAAAGCCACTC
TTTTATCGATAATGATGATCTACCCCGCCCTCTTTTCTATGATAAGCTGG
GGACTGCTTTGCTCTTGTACCGCTGGCAGTTGTCCTCGATGTGTCTGCGC
TGGTGTCGCCCCCTTCGTGCGGTTGGGTAACTACGCATGATATTGAGCGG
CTCTGGTTGAAACGACACCCGAGACTCACTCACCAAGGCTCAAAGGGCAA
TAATAGCGGGCAAGCTATTGGACAGTGCCTCTTAGGCATGCGTGAAGTCG
CCCTCCTCTCCTGACCCACCTTCTCCCCGTCGTCACTCCTTCCTCTCTTC
ACGCCAGTCATGATGAATTTGCTGCGCCTCCCCCTCACCCCTGCTTGCAC
GCATACTCTTAGGTATCACAAGCTACCTTAGAGACAGGAGGATTGCTATT
TCAATCCTTGTCCTTGCGTTCCTGCCTTACCTCTTGTCCCGGAATATGCT
TACGTCGTCAATACTGCACGGTGTCTCAACCGACAGCCATGCTCAGTCAA
AACACTAAGCACTCATCCAACTCTAATCTACACCTCACACAATTTCAGGA
AATAAGCCTTTCTTCGCGATACAATATGCGTCGCGCTCTTTCTCTGGTTG
CCCTTGGCGTCACACTCGCCCTCACGGCGGCTGAGACTGCGCCGACGTTG
ATTCTTACCTCCATCAAGGCAGTTGACACGACCAGGGCAAACAAGGACCA
ATGGAGTGTCAAGGGCTACCTCAACGACCCTGATGGGAATGCTATCCTGG
CCTTTGGTGACACTGGCTTGACCGCGCTGCTTGCAAACGGGAACGAAGAC
ACAGTGAGTGAAACGGACTTTGACGCGGATGATTGCAGACTGCTCAACAA
CGATAAGGGAGTCATTTGCAAGGTAACGGGCGCCCGCCTCTCGCTCAAGA
GGACTAAGAGAGTACCCAAGGACGCCATGCTGGAGGTGCAGAGGAACCGC
AACACGACCACCGCCTCTTCCTACTACAGGGTTTCGGGTGTTTTCCGCCG
TCAGGAGTTCGAAAACACTCTTTCGTCGCCTCTGATTGCTGCCTTCGGCA
TTGAAGGCGCAGATGAGATCTCTGATATCAATTATAAGTGCACTGAGAAA
GTAGGAACCAGGGCCACCAAGTTTCTCTGCACGCCTGGCACTGCCCCGCC
TACTGCTGCCCCTACTGCTACCCCTACTGCTGCCCCTACTGCTGCCCCTT
CTGTCTAGAGGCAGTCGTGTGGTAGATGAGCATCCGCATGGCGTCCTAAT
CTTGCAAGAGATGCTATAAGTCCTGTTGTGTCTTGAATGTTTACGCGTGA
TTTCGTCCCATATACCCTTTTTCAGTGTGGAAGCCTCAGCTTCCAATCCT
GACACGTCGATTTGTCCATGTGCGTGACAATGTGTCTGTCTGTTGTGTCG
TGTGTATGTGTTGTGTATGTGTTGTGTATGTGTTGTGTTTTGTATGTGT
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protein sequence of NO06G00250.1

>NO06G00250.1-protein ID=NO06G00250.1-protein|Name=NO06G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MLSQNTKHSSNSNLHLTQFQEISLSSRYNMRRALSLVALGVTLALTAAET
APTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLAN
GNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEV
QRNRNTTTASSYYRVSGVFRRQEFENTLSSPLIAAFGIEGADEISDINYK
CTEKVGTRATKFLCTPGTAPPTAAPTATPTAAPTAAPSV*
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Synonyms
Publications