NO06G00250.1, NO06G00250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00250.1
Unique NameNO06G00250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1899
Alignment locationchr6:108445..110343 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:108445..110343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00250.1 vs.
Match: EWM30045.1 (hypothetical protein Naga_101600g1 [Nannochloropsis gaditana])

HSP 1 Score: 129.0 bits (323), Expect = 1.900e-26
Identity = 84/203 (41.38%), Postives = 121/203 (59.61%), Query Frame = 0 
Query:   30 MRRALSLVALGVTLALTAAETAPTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEFENTLSSPLIAAFGIE---GADEISDINYKCTE--KVGTRATKFLCTPGTAPPTAAPTA 228
            MRR LSL+ALGVTL +TA +      L ++K  + ++  +DQWS+KG L++P  N + A G  GLT  L + + D ++ T F A +C+LL N +GV CK  GAR+S+KRT+R PK A +   ++ N+ +   YY  SG+FRR +F   L  P++    ++   G+  +  I   C+E  K   R TK  CTPG AP T APTA
Sbjct:    1 MRRILSLLALGVTLVMTAGQE---FTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRR-PKGAKV---KSSNSNSTGGYYGASGMFRRLQF---LQDPVVTPLTVQVVVGSTTLPAIVSTCSERTKGAGRITKITCTPGPAPVTPAPTA 193
The following BLAST results are available for this feature:
BLAST of NO06G00250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30045.11.900e-2641.38hypothetical protein Naga_101600g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00250NO06G00250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00250.1NO06G00250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00250.1.cds1NO06G00250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00250.1 ID=NO06G00250.1|Name=NO06G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1899bp
CGAAAAACCAAATAAACACACGAGTTACCCTCTCCTCTTTCTCCGTTGCA
TTTGCAAAAAATTGATCCCTTACTCTTCGTCTAGTGTGCTTTTATTCCCC
CCTAGTTTATTGTGTTTGTCAAAGTTTGTTGTCGGTCTCTTCGGGGCAAT
GGCTTTTAACGCCTTGCAGGACGCGACCAACCTTTTCGTGTAACGTGTAA
TTCCTGCGGTGGAGCGGCCTTGGTTATCCATTTCTAGACGCATATTCGGT
GCGGGGCGACCCCTAGTCTCACCCTTCCTCTTCTAGTATGACCTATGCCT
GACATGGTCGAGGAACTGCGGTCGACGCCGAGAGTGTGGTTGTTTGTGCC
AAGATGACAGATCTGTGAGTTACAACGGGTGTGCAGCGGTGCGAGGCGAC
GTTAAGGGCCCATGTGGCGGCCGCGCGCACCCGTCCCAGAAAAGCCACTC
TTTTATCGATAATGATGATCTACCCCGCCCTCTTTTCTATGATAAGCTGG
GGACTGCTTTGCTCTTGTACCGCTGGCAGTTGTCCTCGATGTGTCTGCGC
TGGTGTCGCCCCCTTCGTGCGGTTGGGTAACTACGCATGATATTGAGCGG
CTCTGGTTGAAACGACACCCGAGACTCACTCACCAAGGCTCAAAGGGCAA
TAATAGCGGGCAAGCTATTGGACAGTGCCTCTTAGGCATGCGTGAAGTCG
CCCTCCTCTCCTGACCCACCTTCTCCCCGTCGTCACTCCTTCCTCTCTTC
ACGCCAGTCATGATGAATTTGCTGCGCCTCCCCCTCACCCCTGCTTGCAC
GCATACTCTTAGGTATCACAAGCTACCTTAGAGACAGGAGGATTGCTATT
TCAATCCTTGTCCTTGCGTTCCTGCCTTACCTCTTGTCCCGGAATATGCT
TACGTCGTCAATACTGCACGGTGTCTCAACCGACAGCCATGCTCAGTCAA
AACACTAAGCACTCATCCAACTCTAATCTACACCTCACACAATTTCAGGA
AATAAGCCTTTCTTCGCGATACAATATGCGTCGCGCTCTTTCTCTGGTTG
CCCTTGGCGTCACACTCGCCCTCACGGCGGCTGAGACTGCGCCGACGTTG
ATTCTTACCTCCATCAAGGCAGTTGACACGACCAGGGCAAACAAGGACCA
ATGGAGTGTCAAGGGCTACCTCAACGACCCTGATGGGAATGCTATCCTGG
CCTTTGGTGACACTGGCTTGACCGCGCTGCTTGCAAACGGGAACGAAGAC
ACAGTGAGTGAAACGGACTTTGACGCGGATGATTGCAGACTGCTCAACAA
CGATAAGGGAGTCATTTGCAAGGTAACGGGCGCCCGCCTCTCGCTCAAGA
GGACTAAGAGAGTACCCAAGGACGCCATGCTGGAGGTGCAGAGGAACCGC
AACACGACCACCGCCTCTTCCTACTACAGGGTTTCGGGTGTTTTCCGCCG
TCAGGAGTTCGAAAACACTCTTTCGTCGCCTCTGATTGCTGCCTTCGGCA
TTGAAGGCGCAGATGAGATCTCTGATATCAATTATAAGTGCACTGAGAAA
GTAGGAACCAGGGCCACCAAGTTTCTCTGCACGCCTGGCACTGCCCCGCC
TACTGCTGCCCCTACTGCTACCCCTACTGCTGCCCCTACTGCTGCCCCTT
CTGTCTAGAGGCAGTCGTGTGGTAGATGAGCATCCGCATGGCGTCCTAAT
CTTGCAAGAGATGCTATAAGTCCTGTTGTGTCTTGAATGTTTACGCGTGA
TTTCGTCCCATATACCCTTTTTCAGTGTGGAAGCCTCAGCTTCCAATCCT
GACACGTCGATTTGTCCATGTGCGTGACAATGTGTCTGTCTGTTGTGTCG
TGTGTATGTGTTGTGTATGTGTTGTGTATGTGTTGTGTTTTGTATGTGT
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protein sequence of NO06G00250.1

>NO06G00250.1-protein ID=NO06G00250.1-protein|Name=NO06G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MLSQNTKHSSNSNLHLTQFQEISLSSRYNMRRALSLVALGVTLALTAAET
APTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLAN
GNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEV
QRNRNTTTASSYYRVSGVFRRQEFENTLSSPLIAAFGIEGADEISDINYK
CTEKVGTRATKFLCTPGTAPPTAAPTATPTAAPTAAPSV*
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mRNA from alignment at chr6:108445..110343+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00250.1 ID=NO06G00250.1|Name=NO06G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1899bp|location=Sequence derived from alignment at chr6:108445..110343+ (Nannochloropsis oceanica)
CGAAAAACCAAATAAACACACGAGTTACCCTCTCCTCTTTCTCCGTTGCA
TTTGCAAAAAATTGATCCCTTACTCTTCGTCTAGTGTGCTTTTATTCCCC
CCTAGTTTATTGTGTTTGTCAAAGTTTGTTGTCGGTCTCTTCGGGGCAAT
GGCTTTTAACGCCTTGCAGGACGCGACCAACCTTTTCGTGTAACGTGTAA
TTCCTGCGGTGGAGCGGCCTTGGTTATCCATTTCTAGACGCATATTCGGT
GCGGGGCGACCCCTAGTCTCACCCTTCCTCTTCTAGTATGACCTATGCCT
GACATGGTCGAGGAACTGCGGTCGACGCCGAGAGTGTGGTTGTTTGTGCC
AAGATGACAGATCTGTGAGTTACAACGGGTGTGCAGCGGTGCGAGGCGAC
GTTAAGGGCCCATGTGGCGGCCGCGCGCACCCGTCCCAGAAAAGCCACTC
TTTTATCGATAATGATGATCTACCCCGCCCTCTTTTCTATGATAAGCTGG
GGACTGCTTTGCTCTTGTACCGCTGGCAGTTGTCCTCGATGTGTCTGCGC
TGGTGTCGCCCCCTTCGTGCGGTTGGGTAACTACGCATGATATTGAGCGG
CTCTGGTTGAAACGACACCCGAGACTCACTCACCAAGGCTCAAAGGGCAA
TAATAGCGGGCAAGCTATTGGACAGTGCCTCTTAGGCATGCGTGAAGTCG
CCCTCCTCTCCTGACCCACCTTCTCCCCGTCGTCACTCCTTCCTCTCTTC
ACGCCAGTCATGATGAATTTGCTGCGCCTCCCCCTCACCCCTGCTTGCAC
GCATACTCTTAGGTATCACAAGCTACCTTAGAGACAGGAGGATTGCTATT
TCAATCCTTGTCCTTGCGTTCCTGCCTTACCTCTTGTCCCGGAATATGCT
TACGTCGTCAATACTGCACGGTGTCTCAACCGACAGCCATGCTCAGTCAA
AACACTAAGCACTCATCCAACTCTAATCTACACCTCACACAATTTCAGGA
AATAAGCCTTTCTTCGCGATACAATATGCGTCGCGCTCTTTCTCTGGTTG
CCCTTGGCGTCACACTCGCCCTCACGGCGGCTGAGACTGCGCCGACGTTG
ATTCTTACCTCCATCAAGGCAGTTGACACGACCAGGGCAAACAAGGACCA
ATGGAGTGTCAAGGGCTACCTCAACGACCCTGATGGGAATGCTATCCTGG
CCTTTGGTGACACTGGCTTGACCGCGCTGCTTGCAAACGGGAACGAAGAC
ACAGTGAGTGAAACGGACTTTGACGCGGATGATTGCAGACTGCTCAACAA
CGATAAGGGAGTCATTTGCAAGGTAACGGGCGCCCGCCTCTCGCTCAAGA
GGACTAAGAGAGTACCCAAGGACGCCATGCTGGAGGTGCAGAGGAACCGC
AACACGACCACCGCCTCTTCCTACTACAGGGTTTCGGGTGTTTTCCGCCG
TCAGGAGTTCGAAAACACTCTTTCGTCGCCTCTGATTGCTGCCTTCGGCA
TTGAAGGCGCAGATGAGATCTCTGATATCAATTATAAGTGCACTGAGAAA
GTAGGAACCAGGGCCACCAAGTTTCTCTGCACGCCTGGCACTGCCCCGCC
TACTGCTGCCCCTACTGCTACCCCTACTGCTGCCCCTACTGCTGCCCCTT
CTGTCTAGAGGCAGTCGTGTGGTAGATGAGCATCCGCATGGCGTCCTAAT
CTTGCAAGAGATGCTATAAGTCCTGTTGTGTCTTGAATGTTTACGCGTGA
TTTCGTCCCATATACCCTTTTTCAGTGTGGAAGCCTCAGCTTCCAATCCT
GACACGTCGATTTGTCCATGTGCGTGACAATGTGTCTGTCTGTTGTGTCG
TGTGTATGTGTTGTGTATGTGTTGTGTATGTGTTGTGTTTTGTATGTGT
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Coding sequence (CDS) from alignment at chr6:108445..110343+

>NO06G00250.1 ID=NO06G00250.1|Name=NO06G00250.1|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at chr6:108445..110343+ (Nannochloropsis oceanica)
ATGCTCAGTCAAAACACTAAGCACTCATCCAACTCTAATCTACACCTCAC
ACAATTTCAGGAAATAAGCCTTTCTTCGCGATACAATATGCGTCGCGCTC
TTTCTCTGGTTGCCCTTGGCGTCACACTCGCCCTCACGGCGGCTGAGACT
GCGCCGACGTTGATTCTTACCTCCATCAAGGCAGTTGACACGACCAGGGC
AAACAAGGACCAATGGAGTGTCAAGGGCTACCTCAACGACCCTGATGGGA
ATGCTATCCTGGCCTTTGGTGACACTGGCTTGACCGCGCTGCTTGCAAAC
GGGAACGAAGACACAGTGAGTGAAACGGACTTTGACGCGGATGATTGCAG
ACTGCTCAACAACGATAAGGGAGTCATTTGCAAGGTAACGGGCGCCCGCC
TCTCGCTCAAGAGGACTAAGAGAGTACCCAAGGACGCCATGCTGGAGGTG
CAGAGGAACCGCAACACGACCACCGCCTCTTCCTACTACAGGGTTTCGGG
TGTTTTCCGCCGTCAGGAGTTCGAAAACACTCTTTCGTCGCCTCTGATTG
CTGCCTTCGGCATTGAAGGCGCAGATGAGATCTCTGATATCAATTATAAG
TGCACTGAGAAAGTAGGAACCAGGGCCACCAAGTTTCTCTGCACGCCTGG
CACTGCCCCGCCTACTGCTGCCCCTACTGCTACCCCTACTGCTGCCCCTA
CTGCTGCCCCTTCTGTCTAG
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Synonyms
Publications