NO06G00220, NO06G00220 (gene) Nannochloropsis oceanica

Overview
NameNO06G00220
Unique NameNO06G00220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4473
Alignment locationchr6:89182..93654 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:89182..93654 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0035091phosphatidylinositol binding
Vocabulary: INTERPRO
TermDefinition
IPR036871PX_dom_sf
IPR001683Phox
IPR032410MTABC_N
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO06G00220 vs. NCBI_GenBank
Match: EWM26066.1 (hypothetical protein Naga_101333g1 [Nannochloropsis gaditana])

HSP 1 Score: 129.0 bits (323), Expect = 8.500e-26
Identity = 61/113 (53.98%), Postives = 80/113 (70.80%), Query Frame = 0
Query:    1 MSHWCDEQGWGVSPETGITACFAQSIFALGPILFFTIAVPYHLLIPWSAGESGSRRPLYDRRLFDRFSPHKLLLTTLLAMVPFARIVLVLCMHSHELYSGAFFFSNIVTAVAW 114
            M  WCDEQGW +SP  GITACF+QSIF LGP+LFF +A  Y  ++     E+ SRRP +D+RL D+    KLLL+ LL  +P AR+++ +   SH LYS AFFFSN+VT++AW
Sbjct:    1 MLRWCDEQGWKLSPGQGITACFSQSIFGLGPVLFFAVAGLYQYVLFSREDEAASRRPFHDKRLKDKTKTVKLLLSVLLVSIPLARVLVAVGTQSHGLYSVAFFFSNVVTSMAW 113          
The following BLAST results are available for this feature:
BLAST of NO06G00220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26066.18.500e-2653.98hypothetical protein Naga_101333g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR016ncniR016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00220.2NO06G00220.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO06G00220.1NO06G00220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|675685gene_12043Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101333g1gene4455Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00220.2NO06G00220.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO06G00220.1NO06G00220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00220 ID=NO06G00220|Name=NO06G00220|organism=Nannochloropsis oceanica|type=gene|length=4473bp
AAACACAGGCAGGGGCCGGGATGTCGCACTGGTGCGATGAGCAAGGCTGG
GGGGTCAGTCCAGAGACCGgtacgtacagacgtgacagtacccattgcca
cctcgccctcagcagcacataatcacttcattgccctccccctacctcaa
caaagGCATCACGGCTTGCTTTGCCCAGTCCATTTTCGCCCTGGGTCCTA
TCCTGTTCTTTACCATTGCGGTGCCGTACCATCTCCTCATCCCATGGAGC
GCTGGCGAGAGCGGAAGCCGCCGCCCCCTGTACGACCGGCGGCTTTTCGA
CCGGTTCAGCCCCCACAAACTTCTCCTGACAACGCTCCTGGCCATGGTAC
CCTTCGCGCGCATTGTTCTGGTCCTGTGCATGCACAGTCATGAGCTCTAC
TCCGGTGCCTTTTTCTTTTCCAACATCGTTACGGCCGTAGCTTGGACTTG
CAGTTGGTGGGTCGTGCGTTTCGAAGCCGCGTCACAGGAATCAATCTACC
ACTCTTGGATTATTCTGTGCTTTTGGGTCTTATCCCTCATCAGTGACGGC
TTCATTCTGGCGGCAGCTTCACCGGGACTCAAGGCGCATACCCATCTCTC
GACCGCGTTGCGGGGGCAGGGAATCCTGAACGTCATAGCCTTTGCCAGTG
ACGGTGGTTTGGTCCTATTAGGCTTCCTGGCACCCAAGCAAGCCGTGATC
GATGCTGACATCGTTGTGCGTGGGAGGTGCCAGTCGCCGGCTGAGGTAGG
AGTGCCGTCGGAATACACGGCCGTGGGACAAGGTTTTTCCGGGTCCCCAA
CATGGAACGAGGCCGGGCGCGCGACGTGGCAGCGCCAACGCTGGTGGTGG
CCAAAGTGGATCTTCTCCTCCTCATCGTCACGCGACCTGGACCGTCCAGA
GGGTGCGGAGCGCACGGGGAGTGGTGGAGTGTATTCCTCTCTGTGCGAGA
CCTTTTCGAGGGAGACGGGGCCCTTGTCAGATACGACAATGCTTGGTACG
CCGAGTGTCATTCTGCGACAGCAACAGCAGCAACAGCAGCAGCAGCAGCA
ACAGCAGCAGCAGCAGCAACAGCAGGCAGGAGGACAATCAGATGACCAGC
AATCTGCATCGTATGCTGCCCCATCGTCGGCCTTCTATCAATCGTTTTTG
AAGGCGCATGCATCTTTTGTACCGAGCCCTGCGTCTGTGATATCATCCAG
TTTTGACGTGTCCTCAGCACCGCTCAGCCAAGCTGCTGCTGCTGCTCGCG
GTGAGGGAGGAAAAATGCTAAGAACCACATCAGAATCGGGCGCAGAAGCG
GTGGGAGGAGCAGGGGAAGGAGAGGTGGGCTCTGGAAGAGTAGCTGGTGG
TCGGTTGTCACCATCGACCCTTCTGTCGTCATCCTTGAGGCAGGCTGCTT
CCTCATCCATCCTGCGTCCAAAACGGCCTCGACGAGGAAGTCTCGGGGCT
TGGGGCAGTATTGGTGGTAGTGGCAGTGCTGGTGGTGGTGGAGGAGGAGG
AGGAGGAGAAGGGCGAGGGAAGAGTGTCTACCATATTTCGATCCCTCGCT
GGTTGCTTGTGGACCCCGCGCGTAATCCTGTAGAGGTGGAGCCGCTGTTG
GTGGAGGAAGGGAAGGAGGAAGAGGAGGAGGAAGGGGAGGAGATGTTGTC
GCCAGATGCACCGAGCATGATTGGACGGAAGACGTCGATTCTGCCGGATG
TGTGTGACAAGAAAGTGGCTTTCGAGATTGCCATCGAGCGGGAGGGTGGG
AGGGAGGGAGGGGACGAGGGCGAGGACGAGGACGAGGCCGAGGAGAAAAG
AGAGAGGAAGGGCTGGCATAGGGAGGGATGGACGGTTTGGAGAACGTACG
AAGACTTTGACAACTTGCACGCAGCTTTGATGGCGCGGTTCTTCCCGGAG
GGCGGGGGGGAGGTCGGGGGGAACGGCGTGTGTCCTCTGAAGCGCCCGAA
TTACATAGGGCTGAGAGAAGGGAGGTTAAAGGAGCAGGGGAAGGTATTGT
TGAGGGTGGTGGATGTGGTGAGTGACATGCGCGTTCTTCGACAGTATTTG
AGTCAGGCGGTGGCCCTGCGTCTTCAGTGTCGGGAGCTGAGGGAATTTTT
AATCGACGAGGGGGGGGAGGAGGAGGGGAAGGAGGAGGAGGGGAAGGAGG
AGGAGGAGGAAGGGAGAGGGAAAAGGGTGGGTGTGGACGGAGAGCGGGAG
GGAGAGAGATGTCTTCAGGAGGAGGAGGAGGGGGAGGAGGGAGGGAAGGA
GGGAGGGAAGGAGGGGCTGGCGTTGCGGCAGGTGTACTTGGCCATGCGCA
AGTCGATTCCGGCGGAGGATCATCACGTGCGACTTAGAACGTTCAAGgtg
aggagggagggaggaagggagggaggaagggagggagggagggaggcaaa
gagggagggagggggctgctggttggattgggatgatgcaaaatgtatct
gtatgtatgcggactcattcgtatctaatgacgagagtctcaagctcgtt
ttctcgcccattcgcctctccctccttctccctccttccctccctcttgc
tcagGGTGTGATTGCTGGGAATGAGATCGCACGGTGGTTGGTCGACTCGC
GGAGCTGCCCTCCATCAGACGGGGAGGTTAAGACGATGGTGGGGCAGCTG
GTGAAGCGAGGCCTCTTGGTGCCCGTCGTGCGAGgtaggtaggtaggtag
ggagggagggagagagggagggagggagggagggaggaagggagggaagg
aggaaggtaggtagtaggtaggtaggtaggtagataggaagggagggaga
taggtaggtagggagggagggagggagggagggaacaaatgcgtcggatt
ccgtgacgcgtcgcgttttatcaaatatcctcgtccttccctcttcttat
gcctcctttcctccctccctcctttttccctctcagGCTACGTCCACGAG
GAAGAGCCGGAGGAGGAGGAGGAGGAGAAGCGGAGGGAGGGAGGGAGGGA
GGGATCGGCTGGTCCCGTCCTGTTTCGAGACTCTCGTCTGTGGTTGTTTC
ACTATGGAGGAGGGAGGCGGAGGGGGAGGGAGGGTGGGAGGAGGAGGGCA
AAGGTGATGAGGGAGGAGGACGTGGTGGTGTTTGGGCAGgtaggtaggtg
ggaagagagggagggaggaagggagggagggagggagggaggatgacagg
gtgattgctccacttggttatttccctacgttggattttaaagcctttct
catttctcccttcctcccttcctcccttcctccctccctccctccctcca
gGACGTTTCTCTCTGCATTCCCAAGGACGACCCCGAGGGGAAGGGCGGGA
GGGAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGTGTACGAGGTGGTGGTG
TCGACCTGTACAGAGATATGGGGCGTAAAAAGAAGGTATTTGGACTTTGT
AGGCTTGGACCAGCAGCTGAAGAGgtgaggaggggagagagggagggagg
ggaggttgtgaaggtttagaggtttggatttagcacttgaagaggggagg
gagggaaggagggaggaaggaaggaaggaagggagggagggagggaggga
gggagggtggttcgatttggttgacatgaatcatattgtcttcttttctc
cctctctccctccctccctccctccctccctccagCCTGGGCATCCTTCC
TCCAGTGTCCCTTCCAGGTGCAGGAGGCGTCGACAAGGGCAGCACCAGCA
GCGAGGAAAAAGAAGAAGAGGAGGAAGAGGAAGAAGATGCATTAGTAGGA
GGAGGGCGAGATCAAGACAAAGAAGAAGGGAGAGAAGAAGCAGAAGCCGC
AGCTTTCCGAGAGGAGCGACGCCAAAGACTAGAGgtaagggagggaggta
gggggtgatcaagggagggagggagggacggagggggggagggagcaata
gagggagaaagggagggaagggagggaaggagggaaggagggtgggaagg
agggagggggggaccatgatcaatcattccacgtctgcatcatcatctca
tttcctttcctccccctccccccatctctctctccttccctcccttcctc
cctccctccttccctcctcatcaccagATCTATGCCCTTGGTGTCCTGGA
AGCGGCCCAGCACTCGCCGGCCGTGCTGGGGCCGTTAGTGATGATGTTTC
TCGATGAAGATGCCAGTGCATTGAGGATTGGGGgtaaggaagggaaagag
ggagggaaggagggagggagggagggagtagatggttgggccactcattg
tttcgcataccttttaactacaacacagTGATCTCGCAGGAAGGAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGG
AGGAGGAGGAAGCAAAGTCGACGTGACAGAGCTTTATAAGGTCATAGACT
AGAACAATTAATCAAGTAGAAGC
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protein sequence of NO06G00220.2

>NO06G00220.2-protein ID=NO06G00220.2-protein|Name=NO06G00220.2|organism=Nannochloropsis oceanica|type=polypeptide|length=1050bp
MSHWCDEQGWGVSPETGITACFAQSIFALGPILFFTIAVPYHLLIPWSAG
ESGSRRPLYDRRLFDRFSPHKLLLTTLLAMVPFARIVLVLCMHSHELYSG
AFFFSNIVTAVAWTCSWWVVRFEAASQESIYHSWIILCFWVLSLISDGFI
LAAASPGLKAHTHLSTALRGQGILNVIAFASDGGLVLLGFLAPKQAVIDA
DIVVRGRCQSPAEVGVPSEYTAVGQGFSGSPTWNEAGRATWQRQRWWWPK
WIFSSSSSRDLDRPEGAERTGSGGVYSSLCETFSRETGPLSDTTMLGTPS
VILRQQQQQQQQQQQQQQQQQQQAGGQSDDQQSASYAAPSSAFYQSFLKA
HASFVPSPASVISSSFDVSSAPLSQAAAAARGEGGKMLRTTSESGAEAVG
GAGEGEVGSGRVAGGRLSPSTLLSSSLRQAASSSILRPKRPRRGSLGAWG
SIGGSGSAGGGGGGGGGEGRGKSVYHISIPRWLLVDPARNPVEVEPLLVE
EGKEEEEEEGEEMLSPDAPSMIGRKTSILPDVCDKKVAFEIAIEREGGRE
GGDEGEDEDEAEEKRERKGWHREGWTVWRTYEDFDNLHAALMARFFPEGG
GEVGGNGVCPLKRPNYIGLREGRLKEQGKVLLRVVDVVSDMRVLRQYLSQ
AVALRLQCRELREFLIDEGGEEEGKEEEGKEEEEEGRGKRVGVDGEREGE
RCLQEEEEGEEGGKEGGKEGLALRQVYLAMRKSIPAEDHHVRLRTFKGVI
AGNEIARWLVDSRSCPPSDGEVKTMVGQLVKRGLLVPVVRGYVHEEEPEE
EEEEKRREGGREGSAGPVLFRDSRLWLFHYGGGRRRGREGGRRRAKVMRE
EDVVVFGQDVSLCIPKDDPEGKGGREGGRKGGREGVYEVVVSTCTEIWGV
KRRYLDFVGLDQQLKSLGILPPVSLPGAGGVDKGSTSSEEKEEEEEEEED
ALVGGGRDQDKEEGREEAEAAAFREERRQRLEIYALGVLEAAQHSPAVLG
PLVMMFLDEDASALRIGVISQEGEEEEEEEEEEEEEEEEEEEEEEAKST*
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protein sequence of NO06G00220.1

>NO06G00220.1-protein ID=NO06G00220.1-protein|Name=NO06G00220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1050bp
MSHWCDEQGWGVSPETGITACFAQSIFALGPILFFTIAVPYHLLIPWSAG
ESGSRRPLYDRRLFDRFSPHKLLLTTLLAMVPFARIVLVLCMHSHELYSG
AFFFSNIVTAVAWTCSWWVVRFEAASQESIYHSWIILCFWVLSLISDGFI
LAAASPGLKAHTHLSTALRGQGILNVIAFASDGGLVLLGFLAPKQAVIDA
DIVVRGRCQSPAEVGVPSEYTAVGQGFSGSPTWNEAGRATWQRQRWWWPK
WIFSSSSSRDLDRPEGAERTGSGGVYSSLCETFSRETGPLSDTTMLGTPS
VILRQQQQQQQQQQQQQQQQQQQAGGQSDDQQSASYAAPSSAFYQSFLKA
HASFVPSPASVISSSFDVSSAPLSQAAAAARGEGGKMLRTTSESGAEAVG
GAGEGEVGSGRVAGGRLSPSTLLSSSLRQAASSSILRPKRPRRGSLGAWG
SIGGSGSAGGGGGGGGGEGRGKSVYHISIPRWLLVDPARNPVEVEPLLVE
EGKEEEEEEGEEMLSPDAPSMIGRKTSILPDVCDKKVAFEIAIEREGGRE
GGDEGEDEDEAEEKRERKGWHREGWTVWRTYEDFDNLHAALMARFFPEGG
GEVGGNGVCPLKRPNYIGLREGRLKEQGKVLLRVVDVVSDMRVLRQYLSQ
AVALRLQCRELREFLIDEGGEEEGKEEEGKEEEEEGRGKRVGVDGEREGE
RCLQEEEEGEEGGKEGGKEGLALRQVYLAMRKSIPAEDHHVRLRTFKGVI
AGNEIARWLVDSRSCPPSDGEVKTMVGQLVKRGLLVPVVRGYVHEEEPEE
EEEEKRREGGREGSAGPVLFRDSRLWLFHYGGGRRRGREGGRRRAKVMRE
EDVVVFGQDVSLCIPKDDPEGKGGREGGRKGGREGVYEVVVSTCTEIWGV
KRRYLDFVGLDQQLKSLGILPPVSLPGAGGVDKGSTSSEEKEEEEEEEED
ALVGGGRDQDKEEGREEAEAAAFREERRQRLEIYALGVLEAAQHSPAVLG
PLVMMFLDEDASALRIGGKEGKEGGKEGGREGVDGWATHCFAYLLTTTQ*
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Synonyms
Publications