NO06G00130, NO06G00130 (gene) Nannochloropsis oceanica

Overview
NameNO06G00130
Unique NameNO06G00130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1706
Alignment locationchr6:59576..61281 -

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Properties
Property NameValue
DescriptionGlutaredoxin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:59576..61281 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
GO:0009055electron transfer activity
GO:0015035protein disulfide oxidoreductase activity
GO:0009055electron transfer activity
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
GO:0055114oxidation-reduction process
GO:0045454cell redox homeostasis
GO:0022900electron transport chain
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR002109Glutaredoxin
IPR014025Glutaredoxin_subgr
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Homology
[Close]
BLAST of NO06G00130 vs. NCBI_GenBank
Match: XP_020603881.1 (glutaredoxin-like [Orbicella faveolata])

HSP 1 Score: 107.1 bits (266), Expect = 5.400e-20
Identity = 53/89 (59.55%), Postives = 67/89 (75.28%), Query Frame = 0 
Query:   77 VMVFSKSTCPFCKKAKATLIAEGAK-FEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSDSGKLKAMLQSAGAL 165
            V+VFSK+ CP+CKKAK  L + G K + ++ELD+R+DG  IQ  L   TG R+VP VF+GGK +GGGDD K L+D+GKLK MLQ AGAL
Sbjct:   15 VVVFSKTYCPYCKKAKEALSSTGLKDYALVELDEREDGDEIQDILKGITGGRSVPRVFIGGKFVGGGDDVKKLADTGKLKPMLQEAGAL 103
[Close]
BLAST of NO06G00130 vs. NCBI_GenBank
Match: XP_005823809.1 (hypothetical protein GUITHDRAFT_97486, partial [Guillardia theta CCMP2712] >EKX36829.1 hypothetical protein GUITHDRAFT_97486, partial [Guillardia theta CCMP2712])

HSP 1 Score: 106.7 bits (265), Expect = 7.100e-20
Identity = 61/108 (56.48%), Postives = 72/108 (66.67%), Query Frame = 0 
Query:   58 GTLAMAAPEAIISDAIK-KPVMVFSKSTCPFCKKAKATLIAEGAKFEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSDSGKLKAMLQSAGAL 165
            G   M   E +   AI+  PV+VFSKS CPFC KAK  L +  AK+EV+ELD RDDG AIQ AL   TG R+VP VFV GK IGGGDD  +   SG+L+ +LQ AGAL
Sbjct:    8 GATPMMTAEHVAKKAIENNPVVVFSKSYCPFCAKAKDALDSLNAKYEVLELDLRDDGNAIQDALNTLTGGRSVPRVFVKGKFIGGGDDMVSKKASGELETILQEAGAL 115
[Close]
BLAST of NO06G00130 vs. NCBI_GenBank
Match: XP_003738298.1 (PREDICTED: glutaredoxin-like [Galendromus occidentalis])

HSP 1 Score: 106.7 bits (265), Expect = 7.100e-20
Identity = 54/109 (49.54%), Postives = 73/109 (66.97%), Query Frame = 0 
Query:   54 TRRMGTLAMAAPEAIISDAIKKPVMVFSKSTCPFCKKAKATLIAEGAKFEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSDSGKLKAMLQSAG 163
            +R  G +A AA   +       P++VFSK+TCP+C KAK  L    A++++IEL+QR+DG AIQ  L   TG R+VP VF+GGK IGGGDDT  L   GKL+++L+ AG
Sbjct:    7 SRTSGIMAEAAAAFVNQKITASPLVVFSKTTCPYCDKAKRILEKYKAQYDLIELNQREDGQAIQDVLKGITGARSVPRVFIGGKCIGGGDDTARLDSEGKLESLLKEAG 115
[Close]
BLAST of NO06G00130 vs. NCBI_GenBank
Match: XP_024574701.1 (glutaredoxin [Plasmopara halstedii] >CEG38332.1 glutaredoxin [Plasmopara halstedii])

HSP 1 Score: 105.9 bits (263), Expect = 1.200e-19
Identity = 57/106 (53.77%), Postives = 75/106 (70.75%), Query Frame = 0 
Query:   56 RMGTLAMAAPEAIISDAI-KKPVMVFSKSTCPFCKKAKATLIAEGAKFEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSDSGKLKAMLQS 161
            R  TL + A ++ I DAI K+ V+VFSK+ CP+C + K+TL   GAK++V+ELD RDDG  IQ+ L   TG+RTVPN+F+GGK IGG DD  AL    +L +MLQS
Sbjct:   40 RSRTLHVEASKSSIMDAIAKEKVLVFSKTHCPYCARVKSTLEIIGAKYQVVELDTRDDGTQIQSLLLDLTGQRTVPNIFIGGKHIGGCDDIIALHAKSELSSMLQS 145
[Close]
BLAST of NO06G00130 vs. NCBI_GenBank
Match: OAQ98325.1 (hypothetical protein LLEC1_04705 [Cordyceps confragosa])

HSP 1 Score: 105.1 bits (261), Expect = 2.100e-19
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = 0 
Query:   74 KKPVMVFSKSTCPFCKKAKATLIAEGAKFEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSDSGKLKAMLQSAGAL 165
            + PVMVFSKS CP+CK  K+ L +  A F+V+ELDQ  DG A+Q AL   +G+RTVPNV++  K IGG  D ++LS SGKLKA+L  AGAL
Sbjct:   91 ENPVMVFSKSYCPYCKATKSLLSSLDADFKVVELDQESDGSAVQDALEEISGQRTVPNVYISKKHIGGNSDVQSLSSSGKLKALLTEAGAL 181
[Close]
BLAST of NO06G00130 vs. NCBI_GenBank
Match: XP_011655411.1 (PREDICTED: glutaredoxin-C6 [Cucumis sativus] >KGN51374.1 Glutaredoxin [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 2.700e-19
Identity = 54/89 (60.67%), Postives = 62/89 (69.66%), Query Frame = 0 
Query:   76 PVMVFSKSTCPFCKKAKATLIAEGAKFEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSDSGKLKAMLQSAGAL 165
            PV VFSKS CPFC + K  L   G  F+ IELD   DG  IQAALA  TG+RTVPNVF+GGK IGG DDT AL+ SG+L  +L  AGA+
Sbjct:   14 PVAVFSKSYCPFCVQVKRLLTKLGVSFKAIELDTESDGREIQAALAQFTGQRTVPNVFIGGKHIGGCDDTMALNSSGRLVPLLAEAGAI 102
[Close]
BLAST of NO06G00130 vs. NCBI_GenBank
Match: XP_008458784.1 (PREDICTED: glutaredoxin-C6 [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 3.500e-19
Identity = 53/89 (59.55%), Postives = 62/89 (69.66%), Query Frame = 0 
Query:   76 PVMVFSKSTCPFCKKAKATLIAEGAKFEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSDSGKLKAMLQSAGAL 165
            PV VFSKS CPFC + K  L   G  F+ IELD   DG  +QAALA  TG+RTVPNVF+GGK IGG DDT AL+ SG+L  +L  AGA+
Sbjct:   14 PVTVFSKSYCPFCVQVKRLLTKLGVSFKAIELDTESDGREVQAALAQFTGQRTVPNVFIGGKHIGGCDDTMALNSSGRLVPLLAEAGAI 102
[Close]
BLAST of NO06G00130 vs. NCBI_GenBank
Match: OQR84606.1 (hypothetical protein ACHHYP_13150 [Achlya hypogyna])

HSP 1 Score: 104.4 bits (259), Expect = 3.500e-19
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 0 
Query:   55 RRMGTLAMAAPEAIISDAI-KKPVMVFSKSTCPFCKKAKATLIAEGAKFEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSDSGKLKAMLQSAGAL 165
            +++G LA    ++++ D+I K P++VF+KS  P+ K  K  L A GAK  V+ELD RDDG AI   L   TGR+T PNVFV GK+IGG DDTKAL +SG+L  +LQ AGAL
Sbjct:  321 QKIGALA----KSVVLDSITKNPLVVFTKSYDPYSKDVKKLLKALGAKMLVVELDTRDDGAAIMYNLQKLTGRKTTPNVFVAGKTIGGADDTKALHESGELTLLLQQAGAL 427
[Close]
BLAST of NO06G00130 vs. NCBI_GenBank
Match: XP_008904979.1 (glutaredoxin [Phytophthora parasitica INRA-310] >ETI47582.1 glutaredoxin [Phytophthora parasitica P1569] >ETK87519.1 glutaredoxin [Phytophthora parasitica] >ETL40948.1 glutaredoxin [Phytophthora parasitica] >ETL94093.1 glutaredoxin [Phytophthora parasitica] >ETM47335.1 glutaredoxin [Phytophthora parasitica] >ETN09833.1 glutaredoxin [Phytophthora parasitica INRA-310] >ETO76298.1 glutaredoxin [Phytophthora parasitica P1976] >ETP17380.1 glutaredoxin [Phytophthora parasitica CJ01A1] >ETP45435.1 glutaredoxin [Phytophthora parasitica P10297])

HSP 1 Score: 104.0 bits (258), Expect = 4.600e-19
Identity = 54/103 (52.43%), Postives = 69/103 (66.99%), Query Frame = 0 
Query:   62 MAAPEAIISDAIKKPVMVFSKSTCPFCKKAKATLIAEGAKFEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSDSGKLKAMLQSAGAL 165
            ++A E + +     PV+V+SKS CP+C K KA L   GAKFEV+ELDQ D G   Q AL   TG+ TVPNVFVGGKSIGG  D + L  +G L+ +L+ +GAL
Sbjct:    2 VSAKETVQAQITASPVVVYSKSYCPYCTKTKALLTELGAKFEVVELDQIDGGSEQQDALEDLTGQSTVPNVFVGGKSIGGNSDVRKLHKAGNLEPLLKESGAL 104
[Close]
BLAST of NO06G00130 vs. NCBI_GenBank
Match: XP_024579139.1 (hypothetical protein, variant 1 [Plasmopara halstedii] >CEG42770.1 hypothetical protein, variant 1 [Plasmopara halstedii])

HSP 1 Score: 104.0 bits (258), Expect = 4.600e-19
Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 0 
Query:   62 MAAPEAIISDAIKKPVMVFSKSTCPFCKKAKATLIAEGAKFEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSDSGKLKAMLQSAGAL 165
            ++A E + +     PV+V+SK+TCP+C KAK  L + GAKF+V+ELD+  DG   Q  L   TG+RTVPNVFVGGKSIGG  D + L++ GKL+ +L+  GAL
Sbjct:    2 VSAKETVEAKISTTPVVVYSKTTCPYCSKAKELLASLGAKFDVVELDEITDGSEQQDVLEQITGQRTVPNVFVGGKSIGGYTDVRNLNNEGKLEPLLKQNGAL 104
The following BLAST results are available for this feature:
BLAST of NO06G00130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_020603881.15.400e-2059.55glutaredoxin-like [Orbicella faveolata][more]
XP_005823809.17.100e-2056.48hypothetical protein GUITHDRAFT_97486, partial [Gu... [more]
XP_003738298.17.100e-2049.54PREDICTED: glutaredoxin-like [Galendromus occident... [more]
XP_024574701.11.200e-1953.77glutaredoxin [Plasmopara halstedii] >CEG38332.1 gl... [more]
OAQ98325.12.100e-1957.14hypothetical protein LLEC1_04705 [Cordyceps confra... [more]
XP_011655411.12.700e-1960.67PREDICTED: glutaredoxin-C6 [Cucumis sativus] >KGN5... [more]
XP_008458784.13.500e-1959.55PREDICTED: glutaredoxin-C6 [Cucumis melo][more]
OQR84606.13.500e-1953.15hypothetical protein ACHHYP_13150 [Achlya hypogyna... [more]
XP_008904979.14.600e-1952.43glutaredoxin [Phytophthora parasitica INRA-310] >E... [more]
XP_024579139.14.600e-1951.46hypothetical protein, variant 1 [Plasmopara halste... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00130.1NO06G00130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101254g1gene4463Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00130.1NO06G00130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00130 ID=NO06G00130|Name=NO06G00130|organism=Nannochloropsis oceanica|type=gene|length=1706bp
AAACAAAAATGCAGCCTACTTATCACTAGTATGCGTACCTCCTCCACCAC
CTTTTTCTGCGTCGTCGCCACCGCTGCCCTCATGTCGTTTGCCTGCCTCC
TGCCCAAGACGGCTGCCTTTGTCCTGCCCACTGCCGCTTGGGCCTCGgta
cgtagaaagagagcagaatggaggcagggattgtgatgaaggaacgaaag
ggagatatggatgttgcgtcgtcgacgcactctttctttaatctcttcgc
ctgctgcttgcctcctgctgcaactccttctccttccagagcctcccctt
atttccttgattcgctcacacacccctacatttcgtccccctctcacatt
ctctcttgctattttgttaattcccaatagCGTATCGGCGCGACGGCTCC
TTCCGCCATTGTCTCCACCTACACGCGTCGCATGGGCACCTTGGCCATGg
taaggacggagggagggagggagggaaggagggagagacggggttgaaaa
taaaatgtggaaaaacttgcggagtgggttggggatgaaggtggagtatt
gagccgaaagcatatttcataggaatacaggaactcgaccttctcatcca
cgaattattcttcccttcctcccgtccttcctccccctcctcccttccac
cccctcctctcagGCCGCGCCCGAGGCAATTATCTCCGATGCGATCAAGA
AGCCCGTCATGGTCTTCAGgtacacctagaaccaaggagagggggaaagg
aagaagggaaggaaaaaagacgggaaggttgcagcgcaattctgttatcc
atcctcaaccttcctctccctccctctctccttccctccctccctctctc
cttccctccctccctgtctcattccagCAAATCCACCTGCCCTTTCTGTA
AGAAAGCCAAGGCCACTCTCATCGCTGAAGGCGCCAAATTCGAAGTCATA
GAGCTCGACCAGAGGGACGACGGTCCTGCAATCCAGGCGGCCCTTGCAGC
CACCACGGGAAGGAGGACCGTGCCCAATgtaagtcttcctccctccctcc
ctccctccctccctccctccctccctccctccctccctccctccctccct
ccctccctccctccctccctgccttcttccttccctccctccctccgtca
tcgcctgcattgcttctcaatctcatgaacaacataaataaagtatccac
ctcatcctccctccctccctccctcccgcctctccgcagGTGTTCGTCGG
TGGCAAGTCTATCGGCGGTGGGGATGACACCAAAGCCCTGTCTGACTCCG
GCAAGCTTAAGGCGATGCTGCAGTCGGCTGGAGCGCTCTAAGAGACAACT
CCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCTCTTCCTTCCTGTGAATG
CCGGGTCGGACAAACATGTGGAAATTTTCGGAGGGTAGGAGGGTAGGAGA
GTTATAAGGGAAGGTGAAGAAGAGGGAGCGAGAGCGAGGCGGAGAGTTGG
GGGATTTTTTTTCCAGCAGCAGCAGCGGCAGCAGCGGCAGCAGCCTCCCC
ACCAGGAGAGCCAGCTGTCCAGAGAGAGAGGGAAGCGGAGAGAGAGAAAG
AGAGAGACAATGGTGAAAACTGTTCAACAGCAGCTTCGGCGCACATTAGG
ATAATCACTCACTGACGAGCAACGCGGATGTTTCTCAATCCACTCGCATT
CGGCCA
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protein sequence of NO06G00130.1

>NO06G00130.1-protein ID=NO06G00130.1-protein|Name=NO06G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MRTSSTTFFCVVATAALMSFACLLPKTAAFVLPTAAWASRIGATAPSAIV
STYTRRMGTLAMAAPEAIISDAIKKPVMVFSKSTCPFCKKAKATLIAEGA
KFEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSD
SGKLKAMLQSAGAL*
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Synonyms
Publications