NO06G00130.1, NO06G00130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00130.1
Unique NameNO06G00130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length890
Alignment locationchr6:59576..61281 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:59576..61281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G00130.1 vs.
Match: EWM29561.1 (glutaredoxin [Nannochloropsis gaditana])

HSP 1 Score: 115.2 bits (287), Expect = 2.000e-22
Identity = 67/112 (59.82%), Postives = 78/112 (69.64%), Query Frame = 0
Query:   58 GTLAMAAPEAIISDAIKKP-----VMVFSKSTCPFCKKAKATLIAEGAKFEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSDSGKLKAMLQSAGAL 165
            GT   A  EA+  D +K       V+VFSK+ CPF   AK TL +EGA F V+ELDQR DG  IQAALA  TGRRTVPNVF+ GKSIGGGDDT AL+ +GK+K ML + GAL
Sbjct:   97 GTAVAATAEAM--DFVKTTLRAHKVVVFSKTYCPFASMAKRTLQSEGAVFHVVELDQRSDGGDIQAALAEMTGRRTVPNVFLEGKSIGGGDDTVALARAGKMKEMLSALGAL 206          
The following BLAST results are available for this feature:
BLAST of NO06G00130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29561.12.000e-2259.82glutaredoxin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00130NO06G00130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00130.1NO06G00130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00130.1.cds1NO06G00130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00130.1.cds2NO06G00130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00130.1.cds3NO06G00130.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00130.1.cds4NO06G00130.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00130.1.cds5NO06G00130.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00130.1 ID=NO06G00130.1|Name=NO06G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=890bp
AAACAAAAATGCAGCCTACTTATCACTAGTATGCGTACCTCCTCCACCAC
CTTTTTCTGCGTCGTCGCCACCGCTGCCCTCATGTCGTTTGCCTGCCTCC
TGCCCAAGACGGCTGCCTTTGTCCTGCCCACTGCCGCTTGGGCCTCGCGT
ATCGGCGCGACGGCTCCTTCCGCCATTGTCTCCACCTACACGCGTCGCAT
GGGCACCTTGGCCATGGCCGCGCCCGAGGCAATTATCTCCGATGCGATCA
AGAAGCCCGTCATGGTCTTCAGCAAATCCACCTGCCCTTTCTGTAAGAAA
GCCAAGGCCACTCTCATCGCTGAAGGCGCCAAATTCGAAGTCATAGAGCT
CGACCAGAGGGACGACGGTCCTGCAATCCAGGCGGCCCTTGCAGCCACCA
CGGGAAGGAGGACCGTGCCCAATGTGTTCGTCGGTGGCAAGTCTATCGGC
GGTGGGGATGACACCAAAGCCCTGTCTGACTCCGGCAAGCTTAAGGCGAT
GCTGCAGTCGGCTGGAGCGCTCTAAGAGACAACTCCTCCCTCCCTCCCTC
CCTTCCTCCCTCCCTCTCTTCCTTCCTGTGAATGCCGGGTCGGACAAACA
TGTGGAAATTTTCGGAGGGTAGGAGGGTAGGAGAGTTATAAGGGAAGGTG
AAGAAGAGGGAGCGAGAGCGAGGCGGAGAGTTGGGGGATTTTTTTTCCAG
CAGCAGCAGCGGCAGCAGCGGCAGCAGCCTCCCCACCAGGAGAGCCAGCT
GTCCAGAGAGAGAGGGAAGCGGAGAGAGAGAAAGAGAGAGACAATGGTGA
AAACTGTTCAACAGCAGCTTCGGCGCACATTAGGATAATCACTCACTGAC
GAGCAACGCGGATGTTTCTCAATCCACTCGCATTCGGCCA
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protein sequence of NO06G00130.1

>NO06G00130.1-protein ID=NO06G00130.1-protein|Name=NO06G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MRTSSTTFFCVVATAALMSFACLLPKTAAFVLPTAAWASRIGATAPSAIV
STYTRRMGTLAMAAPEAIISDAIKKPVMVFSKSTCPFCKKAKATLIAEGA
KFEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSD
SGKLKAMLQSAGAL*
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mRNA from alignment at chr6:59576..61281-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00130.1 ID=NO06G00130.1|Name=NO06G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1706bp|location=Sequence derived from alignment at chr6:59576..61281- (Nannochloropsis oceanica)
AAACAAAAATGCAGCCTACTTATCACTAGTATGCGTACCTCCTCCACCAC CTTTTTCTGCGTCGTCGCCACCGCTGCCCTCATGTCGTTTGCCTGCCTCC TGCCCAAGACGGCTGCCTTTGTCCTGCCCACTGCCGCTTGGGCCTCGGTA CGTAGAAAGAGAGCAGAATGGAGGCAGGGATTGTGATGAAGGAACGAAAG GGAGATATGGATGTTGCGTCGTCGACGCACTCTTTCTTTAATCTCTTCGC CTGCTGCTTGCCTCCTGCTGCAACTCCTTCTCCTTCCAGAGCCTCCCCTT ATTTCCTTGATTCGCTCACACACCCCTACATTTCGTCCCCCTCTCACATT CTCTCTTGCTATTTTGTTAATTCCCAATAGCGTATCGGCGCGACGGCTCC TTCCGCCATTGTCTCCACCTACACGCGTCGCATGGGCACCTTGGCCATGG TAAGGACGGAGGGAGGGAGGGAGGGAAGGAGGGAGAGACGGGGTTGAAAA TAAAATGTGGAAAAACTTGCGGAGTGGGTTGGGGATGAAGGTGGAGTATT GAGCCGAAAGCATATTTCATAGGAATACAGGAACTCGACCTTCTCATCCA CGAATTATTCTTCCCTTCCTCCCGTCCTTCCTCCCCCTCCTCCCTTCCAC CCCCTCCTCTCAGGCCGCGCCCGAGGCAATTATCTCCGATGCGATCAAGA AGCCCGTCATGGTCTTCAGGTACACCTAGAACCAAGGAGAGGGGGAAAGG AAGAAGGGAAGGAAAAAAGACGGGAAGGTTGCAGCGCAATTCTGTTATCC ATCCTCAACCTTCCTCTCCCTCCCTCTCTCCTTCCCTCCCTCCCTCTCTC CTTCCCTCCCTCCCTGTCTCATTCCAGCAAATCCACCTGCCCTTTCTGTA AGAAAGCCAAGGCCACTCTCATCGCTGAAGGCGCCAAATTCGAAGTCATA GAGCTCGACCAGAGGGACGACGGTCCTGCAATCCAGGCGGCCCTTGCAGC CACCACGGGAAGGAGGACCGTGCCCAATGTAAGTCTTCCTCCCTCCCTCC CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT CCCTCCCTCCCTCCCTCCCTGCCTTCTTCCTTCCCTCCCTCCCTCCGTCA TCGCCTGCATTGCTTCTCAATCTCATGAACAACATAAATAAAGTATCCAC CTCATCCTCCCTCCCTCCCTCCCTCCCGCCTCTCCGCAGGTGTTCGTCGG TGGCAAGTCTATCGGCGGTGGGGATGACACCAAAGCCCTGTCTGACTCCG GCAAGCTTAAGGCGATGCTGCAGTCGGCTGGAGCGCTCTAAGAGACAACT CCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCTCTTCCTTCCTGTGAATG CCGGGTCGGACAAACATGTGGAAATTTTCGGAGGGTAGGAGGGTAGGAGA GTTATAAGGGAAGGTGAAGAAGAGGGAGCGAGAGCGAGGCGGAGAGTTGG GGGATTTTTTTTCCAGCAGCAGCAGCGGCAGCAGCGGCAGCAGCCTCCCC ACCAGGAGAGCCAGCTGTCCAGAGAGAGAGGGAAGCGGAGAGAGAGAAAG AGAGAGACAATGGTGAAAACTGTTCAACAGCAGCTTCGGCGCACATTAGG ATAATCACTCACTGACGAGCAACGCGGATGTTTCTCAATCCACTCGCATT CGGCCA
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Coding sequence (CDS) from alignment at chr6:59576..61281-

>NO06G00130.1 ID=NO06G00130.1|Name=NO06G00130.1|organism=Nannochloropsis oceanica|type=CDS|length=495bp|location=Sequence derived from alignment at chr6:59576..61281- (Nannochloropsis oceanica)
ATGCGTACCTCCTCCACCACCTTTTTCTGCGTCGTCGCCACCGCTGCCCT
CATGTCGTTTGCCTGCCTCCTGCCCAAGACGGCTGCCTTTGTCCTGCCCA
CTGCCGCTTGGGCCTCGCGTATCGGCGCGACGGCTCCTTCCGCCATTGTC
TCCACCTACACGCGTCGCATGGGCACCTTGGCCATGGCCGCGCCCGAGGC
AATTATCTCCGATGCGATCAAGAAGCCCGTCATGGTCTTCAGCAAATCCA
CCTGCCCTTTCTGTAAGAAAGCCAAGGCCACTCTCATCGCTGAAGGCGCC
AAATTCGAAGTCATAGAGCTCGACCAGAGGGACGACGGTCCTGCAATCCA
GGCGGCCCTTGCAGCCACCACGGGAAGGAGGACCGTGCCCAATGTGTTCG
TCGGTGGCAAGTCTATCGGCGGTGGGGATGACACCAAAGCCCTGTCTGAC
TCCGGCAAGCTTAAGGCGATGCTGCAGTCGGCTGGAGCGCTCTAA
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Synonyms
Publications