NO06G00130, NO06G00130 (gene) Nannochloropsis oceanica

Overview
NameNO06G00130
Unique NameNO06G00130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1706
Alignment locationchr6:59576..61281 -

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Properties
Property NameValue
DescriptionGlutaredoxin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:59576..61281 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
GO:0009055electron transfer activity
GO:0015035protein disulfide oxidoreductase activity
GO:0009055electron transfer activity
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
GO:0055114oxidation-reduction process
GO:0045454cell redox homeostasis
GO:0022900electron transport chain
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR002109Glutaredoxin
IPR014025Glutaredoxin_subgr
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Homology
[Close]
BLAST of NO06G00130 vs. NCBI_GenBank
Match: EWM29561.1 (glutaredoxin [Nannochloropsis gaditana])

HSP 1 Score: 115.2 bits (287), Expect = 2.000e-22
Identity = 67/112 (59.82%), Postives = 78/112 (69.64%), Query Frame = 0 
Query:   58 GTLAMAAPEAIISDAIK-----KPVMVFSKSTCPFCKKAKATLIAEGAKFEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSDSGKLKAMLQSAGAL 165
            GT   A  EA+  D +K       V+VFSK+ CPF   AK TL +EGA F V+ELDQR DG  IQAALA  TGRRTVPNVF+ GKSIGGGDDT AL+ +GK+K ML + GAL
Sbjct:   97 GTAVAATAEAM--DFVKTTLRAHKVVVFSKTYCPFASMAKRTLQSEGAVFHVVELDQRSDGGDIQAALAEMTGRRTVPNVFLEGKSIGGGDDTVALARAGKMKEMLSALGAL 206
[Close]
BLAST of NO06G00130 vs. NCBI_GenBank
Match: AEW90961.1 (glutaredoxin 4H1 [Secale cereale x Triticum turgidum subsp. durum])

HSP 1 Score: 110.5 bits (275), Expect = 4.900e-21
Identity = 64/121 (52.89%), Postives = 79/121 (65.29%), Query Frame = 0 
Query:   44 TAPSAIVSTYTRRMGTLAMAAPEAIISDAIKKPVMVFSKSTCPFCKKAKATLIAEGAKFEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSDSGKLKAMLQSAGAL 165
            TA S+  S  T     +A+A  + I++ A   PV+VFSKS CPFC + K  L   GA F+ IELD   DGP IQ+ALA  TG+RTVPNVF+ GK IGG DDT AL+  GKL A+L  AGA+
Sbjct:    3 TAFSSSSSASTPESRAMALAKAKEIVASA---PVVVFSKSYCPFCVQVKKLLTRLGASFKAIELDTESDGPEIQSALAEWTGQRTVPNVFINGKHIGGCDDTIALNKGGKLVALLTEAGAI 120
[Close]
BLAST of NO06G00130 vs. NCBI_GenBank
Match: AEW90962.1 (glutaredoxin 4H6 [Secale cereale x Triticum turgidum subsp. durum])

HSP 1 Score: 110.5 bits (275), Expect = 4.900e-21
Identity = 64/121 (52.89%), Postives = 79/121 (65.29%), Query Frame = 0 
Query:   44 TAPSAIVSTYTRRMGTLAMAAPEAIISDAIKKPVMVFSKSTCPFCKKAKATLIAEGAKFEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSDSGKLKAMLQSAGAL 165
            TA S+  S  T     +A+A  + I++ A   PV+VFSKS CPFC + K  L   GA F+ IELD   DGP IQ+ALA  TG+RTVPNVF+ GK IGG DDT AL+  GKL A+L  AGA+
Sbjct:    3 TAFSSSSSASTPESRAMALAKAKEIVASA---PVVVFSKSYCPFCVQVKKLLTQLGASFKAIELDTESDGPEIQSALAEWTGQRTVPNVFINGKHIGGCDDTIALNKGGKLVALLTEAGAI 120
[Close]
BLAST of NO06G00130 vs. NCBI_GenBank
Match: XP_005855450.1 (glutaredoxin type i [Nannochloropsis gaditana CCMP526] >EKU20909.1 glutaredoxin type i [Nannochloropsis gaditana CCMP526] >EWM24375.1 glutaredoxin type i [Nannochloropsis gaditana])

HSP 1 Score: 110.5 bits (275), Expect = 4.900e-21
Identity = 59/97 (60.82%), Postives = 68/97 (70.10%), Query Frame = 0 
Query:   66 EAIISDAI-KKPVMVFSKSTCPFCKKAKATLIAEGAKFEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSDSGKLKAMLQSA 162
            EA + D I      V SKS CPFC +AK+TL + GA  E+IELDQR DGPA+Q  LA  TGRRTVPNVF+GGKSIGG DDT  L   G+LK +L SA
Sbjct:   37 EAFLVDGITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLLVSA 133
[Close]
BLAST of NO06G00130 vs. NCBI_GenBank
Match: AEP25125.1 (glutaredoxin [Secale cereale x Triticum turgidum subsp. durum])

HSP 1 Score: 110.2 bits (274), Expect = 6.400e-21
Identity = 63/121 (52.07%), Postives = 79/121 (65.29%), Query Frame = 0 
Query:   44 TAPSAIVSTYTRRMGTLAMAAPEAIISDAIKKPVMVFSKSTCPFCKKAKATLIAEGAKFEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSDSGKLKAMLQSAGAL 165
            TA S+  S  T     +A+A  + I++ A   PV+VFSKS CPFC + K  L   GA F+ +ELD   DGP IQ+ALA  TG+RTVPNVF+ GK IGG DDT AL+  GKL A+L  AGA+
Sbjct:    3 TAFSSSSSASTPESRAMALAKAKEIVASA---PVVVFSKSYCPFCVQVKKLLTQLGASFKAVELDTESDGPEIQSALAEWTGQRTVPNVFINGKHIGGCDDTIALNKGGKLVALLTEAGAI 120
[Close]
BLAST of NO06G00130 vs. NCBI_GenBank
Match: XP_003580104.1 (glutaredoxin-C6 [Brachypodium distachyon] >KQJ83488.1 hypothetical protein BRADI_5g15220v3 [Brachypodium distachyon])

HSP 1 Score: 109.8 bits (273), Expect = 8.300e-21
Identity = 60/114 (52.63%), Postives = 77/114 (67.54%), Query Frame = 0 
Query:   51 STYTRRMGTLAMAAPEAIISDAIKKPVMVFSKSTCPFCKKAKATLIAEGAKFEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSDSGKLKAMLQSAGAL 165
            S+ T    T+A+A  + I++ A   PV+VFSKS CPFC K K      GA F+ IELD+  DG  +Q+ALA  TG+RTVPNVF+ GK IGG DDT AL++ GKL A+L  AGA+
Sbjct:    7 SSSTPESRTMALAKAKEIVASA---PVVVFSKSYCPFCVKVKQLFTQLGASFKAIELDKESDGAEMQSALAEWTGQRTVPNVFINGKHIGGCDDTVALNNGGKLVALLTEAGAI 117
[Close]
BLAST of NO06G00130 vs. NCBI_GenBank
Match: XP_020160474.1 (glutaredoxin-C6-like [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 108.6 bits (270), Expect = 1.900e-20
Identity = 60/114 (52.63%), Postives = 75/114 (65.79%), Query Frame = 0 
Query:   51 STYTRRMGTLAMAAPEAIISDAIKKPVMVFSKSTCPFCKKAKATLIAEGAKFEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSDSGKLKAMLQSAGAL 165
            S+ T     +A+A  + I++ A   PV+VFSKS CPFC + K      GA F+ IELD   DGP IQ+ALA  TG+RTVPNVF+ GK IGG DDT AL+  GKL A+L  AGA+
Sbjct:    8 SSSTPESRAMALAKAKEIVASA---PVVVFSKSYCPFCVQVKKLFTQLGASFKAIELDTESDGPEIQSALAEWTGQRTVPNVFINGKHIGGCDDTVALNKGGKLIALLTEAGAI 118
[Close]
BLAST of NO06G00130 vs. NCBI_GenBank
Match: BAK01747.1 (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 107.8 bits (268), Expect = 3.200e-20
Identity = 59/114 (51.75%), Postives = 75/114 (65.79%), Query Frame = 0 
Query:   51 STYTRRMGTLAMAAPEAIISDAIKKPVMVFSKSTCPFCKKAKATLIAEGAKFEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSDSGKLKAMLQSAGAL 165
            S+ T     +A+A  + I++ A   PV+VFSKS CPFC + K      GA F+ IELD   DGP +Q+ALA  TG+RTVPNVF+ GK IGG DDT AL+  GKL A+L  AGA+
Sbjct:    9 SSSTPESRAMALAKAKEIVASA---PVVVFSKSYCPFCVQVKKLFTQLGASFKAIELDTESDGPEMQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNKGGKLVALLTEAGAI 119
[Close]
BLAST of NO06G00130 vs. NCBI_GenBank
Match: ACF40843.1 (glutaredoxin [Triticum aestivum])

HSP 1 Score: 107.8 bits (268), Expect = 3.200e-20
Identity = 58/105 (55.24%), Postives = 72/105 (68.57%), Query Frame = 0 
Query:   60 LAMAAPEAIISDAIKKPVMVFSKSTCPFCKKAKATLIAEGAKFEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSDSGKLKAMLQSAGAL 165
            +A+A  + I++ A   PV+VFSKS CPFC + K      GA F+ IELD   DGP IQ+ALA  TG+RTVPNVF+ GK IGG DDT AL+  GKL A+L  AGA+
Sbjct:    1 MALAKAKEIVASA---PVVVFSKSYCPFCVQVKKLFTQLGASFKAIELDTESDGPEIQSALAEWTGQRTVPNVFINGKHIGGCDDTVALNKGGKLIALLTEAGAI 102
[Close]
BLAST of NO06G00130 vs. NCBI_GenBank
Match: XP_005835609.1 (hypothetical protein GUITHDRAFT_105774 [Guillardia theta CCMP2712] >EKX48629.1 hypothetical protein GUITHDRAFT_105774 [Guillardia theta CCMP2712])

HSP 1 Score: 107.1 bits (266), Expect = 5.400e-20
Identity = 60/113 (53.10%), Postives = 78/113 (69.03%), Query Frame = 0 
Query:   54 TRRMGTLA-MAAPEAIISDAIK-KPVMVFSKSTCPFCKKAKATLIAEGAKFEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSDSGKLKAMLQSAGAL 165
            +++ G LA  A+ E +    IK   VMVFSKS CPFC KAK+TL   G K+E +ELD+R DG  IQ  + + TG R+VP VFVGGK +GGGDD  A + SG+L+AML+ AGA+
Sbjct:   39 SKKSGLLACQASAEDLAQKMIKSNKVMVFSKSYCPFCNKAKSTLDGLGVKYEAMELDKRADGSDIQDYMLSLTGARSVPRVFVGGKFVGGGDDVVAKAKSGELQAMLKQAGAM 151
The following BLAST results are available for this feature:
BLAST of NO06G00130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29561.12.000e-2259.82glutaredoxin [Nannochloropsis gaditana][more]
AEW90961.14.900e-2152.89glutaredoxin 4H1 [Secale cereale x Triticum turgid... [more]
AEW90962.14.900e-2152.89glutaredoxin 4H6 [Secale cereale x Triticum turgid... [more]
XP_005855450.14.900e-2160.82glutaredoxin type i [Nannochloropsis gaditana CCMP... [more]
AEP25125.16.400e-2152.07glutaredoxin [Secale cereale x Triticum turgidum s... [more]
XP_003580104.18.300e-2152.63glutaredoxin-C6 [Brachypodium distachyon] >KQJ8348... [more]
XP_020160474.11.900e-2052.63glutaredoxin-C6-like [Aegilops tauschii subsp. tau... [more]
BAK01747.13.200e-2051.75predicted protein [Hordeum vulgare subsp. vulgare][more]
ACF40843.13.200e-2055.24glutaredoxin [Triticum aestivum][more]
XP_005835609.15.400e-2053.10hypothetical protein GUITHDRAFT_105774 [Guillardia... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00130.1NO06G00130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101254g1gene4463Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00130.1NO06G00130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00130 ID=NO06G00130|Name=NO06G00130|organism=Nannochloropsis oceanica|type=gene|length=1706bp
AAACAAAAATGCAGCCTACTTATCACTAGTATGCGTACCTCCTCCACCAC
CTTTTTCTGCGTCGTCGCCACCGCTGCCCTCATGTCGTTTGCCTGCCTCC
TGCCCAAGACGGCTGCCTTTGTCCTGCCCACTGCCGCTTGGGCCTCGgta
cgtagaaagagagcagaatggaggcagggattgtgatgaaggaacgaaag
ggagatatggatgttgcgtcgtcgacgcactctttctttaatctcttcgc
ctgctgcttgcctcctgctgcaactccttctccttccagagcctcccctt
atttccttgattcgctcacacacccctacatttcgtccccctctcacatt
ctctcttgctattttgttaattcccaatagCGTATCGGCGCGACGGCTCC
TTCCGCCATTGTCTCCACCTACACGCGTCGCATGGGCACCTTGGCCATGg
taaggacggagggagggagggagggaaggagggagagacggggttgaaaa
taaaatgtggaaaaacttgcggagtgggttggggatgaaggtggagtatt
gagccgaaagcatatttcataggaatacaggaactcgaccttctcatcca
cgaattattcttcccttcctcccgtccttcctccccctcctcccttccac
cccctcctctcagGCCGCGCCCGAGGCAATTATCTCCGATGCGATCAAGA
AGCCCGTCATGGTCTTCAGgtacacctagaaccaaggagagggggaaagg
aagaagggaaggaaaaaagacgggaaggttgcagcgcaattctgttatcc
atcctcaaccttcctctccctccctctctccttccctccctccctctctc
cttccctccctccctgtctcattccagCAAATCCACCTGCCCTTTCTGTA
AGAAAGCCAAGGCCACTCTCATCGCTGAAGGCGCCAAATTCGAAGTCATA
GAGCTCGACCAGAGGGACGACGGTCCTGCAATCCAGGCGGCCCTTGCAGC
CACCACGGGAAGGAGGACCGTGCCCAATgtaagtcttcctccctccctcc
ctccctccctccctccctccctccctccctccctccctccctccctccct
ccctccctccctccctccctgccttcttccttccctccctccctccgtca
tcgcctgcattgcttctcaatctcatgaacaacataaataaagtatccac
ctcatcctccctccctccctccctcccgcctctccgcagGTGTTCGTCGG
TGGCAAGTCTATCGGCGGTGGGGATGACACCAAAGCCCTGTCTGACTCCG
GCAAGCTTAAGGCGATGCTGCAGTCGGCTGGAGCGCTCTAAGAGACAACT
CCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCTCTTCCTTCCTGTGAATG
CCGGGTCGGACAAACATGTGGAAATTTTCGGAGGGTAGGAGGGTAGGAGA
GTTATAAGGGAAGGTGAAGAAGAGGGAGCGAGAGCGAGGCGGAGAGTTGG
GGGATTTTTTTTCCAGCAGCAGCAGCGGCAGCAGCGGCAGCAGCCTCCCC
ACCAGGAGAGCCAGCTGTCCAGAGAGAGAGGGAAGCGGAGAGAGAGAAAG
AGAGAGACAATGGTGAAAACTGTTCAACAGCAGCTTCGGCGCACATTAGG
ATAATCACTCACTGACGAGCAACGCGGATGTTTCTCAATCCACTCGCATT
CGGCCA
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protein sequence of NO06G00130.1

>NO06G00130.1-protein ID=NO06G00130.1-protein|Name=NO06G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MRTSSTTFFCVVATAALMSFACLLPKTAAFVLPTAAWASRIGATAPSAIV
STYTRRMGTLAMAAPEAIISDAIKKPVMVFSKSTCPFCKKAKATLIAEGA
KFEVIELDQRDDGPAIQAALAATTGRRTVPNVFVGGKSIGGGDDTKALSD
SGKLKAMLQSAGAL*
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Synonyms
Publications