NO06G00080, NO06G00080 (gene) Nannochloropsis oceanica

Overview
NameNO06G00080
Unique NameNO06G00080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4567
Alignment locationchr6:39591..44157 +

Link to JBrowse

Properties
Property NameValue
DescriptionAP-3 complex subunit mu
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:39591..44157 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0030131clathrin adaptor complex
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR036168AP2_Mu_C_sf
IPR028565MHD
IPR022775AP_mu_sigma_su
IPR001392Clathrin_mu
Homology
BLAST of NO06G00080 vs. NCBI_GenBank
Match: XP_009041098.1 (hypothetical protein AURANDRAFT_55259 [Aureococcus anophagefferens] >EGB04247.1 hypothetical protein AURANDRAFT_55259 [Aureococcus anophagefferens])

HSP 1 Score: 572.4 bits (1474), Expect = 1.300e-159
Identity = 276/433 (63.74%), Postives = 343/433 (79.21%), Query Frame = 0
Query:   47 MLHSLFILNQHGEVLIEKHWRSVTPRAVCDFFWDEVNKYPDKLDVPPLIAASKYYLVNIYREELFLVGTMLSEIPPLLVVEFLHRVLDIFSEYLGGLDDASIKDNFSTVYQLLEEMMDNGYPLTTEPNALKAMIRPPTLLSRLEAAATGKARGVSEVLPDGTVSNMPWRKSGVKYSQNEIYLDIVEEMDAIVDCSGQVVSAEVSGFIFANSRLSGIPDLSLMFVDPDVIDDCAFHPCVRYNRYERDRTVSFVPPDGQFELMRYRVTPPQALVPPIYCTAQIVYASSAGNDGTSSGRLTLTLGCRPSHCLVLSNKGKSVAFEDVVVVVPLPKAVKTTNLQANVGTVLYDEASKVVKWTIGKMSCR-ERNPQLSGSMVLAGARPEESPPIQVDWKVPMASVSGLAVLSLQLLNERYRPYKGVRTITKSGRFQVRS 479
            M+ SLF+    GEVLIE+HWR VTPR VCDFFWDEVNKY    +VPP++  SKYYLV++ R++++++ T+  ++ PLLV+EFLHRV+DIF EY G  D+ SIKDNFS VYQLLEEM+DNG PLTTEPNALKAMI+PP+++ RL+A ATG++  VS+VLPDGT+S+MPWRKSGVKY+QN+IYLDIVEE+DAIVD +GQVVS+EV+G I ANSRLSGIPDL L FVDP+VIDDC+FHPCVRYNR+ERDR VSFVPPDG FELMRYRV     +  PIY T  +   + +       GR+ + +G + +  LV+ N+  S+  EDV + +P PK VKT  L A +GTVLYDEA+KV KWT+GK++    R PQL+GSMV+ GA  EE PPIQV WKVP+AS+SG+ + +LQL NERYRPYKGVRTITKSGRFQVR+
Sbjct:    1 MIKSLFVTGSSGEVLIERHWRGVTPRNVCDFFWDEVNKYDHSTEVPPILHTSKYYLVSVSRDDIYVIATLAKDVAPLLVIEFLHRVVDIFVEYFGAADEGSIKDNFSMVYQLLEEMLDNGNPLTTEPNALKAMIKPPSVMGRLQAVATGRS-NVSDVLPDGTISSMPWRKSGVKYAQNDIYLDIVEEVDAIVDRNGQVVSSEVTGAIMANSRLSGIPDLCLSFVDPEVIDDCSFHPCVRYNRFERDRVVSFVPPDGAFELMRYRVNTKANVSAPIYVTPSV---TMSDEHNAGHGRIQIQIGQKQTSSLVIPNRKGSLLIEDVTLSIPFPKCVKTATLSATLGTVLYDEATKVAKWTVGKLAVTGNRVPQLTGSMVIQGAL-EELPPIQVTWKVPIASISGIQIAALQLTNERYRPYKGVRTITKSGRFQVRA 428          
BLAST of NO06G00080 vs. NCBI_GenBank
Match: CBJ25994.1 (Clathrin assembly complex, medium subunit [Ectocarpus siliculosus])

HSP 1 Score: 528.9 bits (1361), Expect = 1.700e-146
Identity = 257/436 (58.94%), Postives = 336/436 (77.06%), Query Frame = 0
Query:   47 MLHSLFILNQHGEVLIEKHWRSVTPRAVCDFFWDEVNKYPDKLDVPPLIAASKYYLVNIYREELFLVGTMLSEIPPLLVVEFLHRVLDIFSEYLGG-LDDASIKDNFSTVYQLLEEMMDNGYPLTTEPNALKAMIRPPTLLSRLEAAATGKARGVSEVLPDGTVSNMPWRKSGVKYSQNEIYLDIVEEMDAIVDCSGQVVSAEVSGFIFANSRLSGIPDLSLMFVDPDVIDDCAFHPCVRYNRYERDRTVSFVPPDGQFELMRYRVTP--PQALVPPIYCTAQIVYASSAGNDGTSSGRLTLTLGCRPSHCLVLSNKGKSVAFEDVVVVVPLPKAVKTTNLQANVGTVLYDEASKVVKWTIGKMSCRERNPQLSGSMVLAGARPEESPPIQVDWKVPMASVSGLAVLSLQLLNERYRPYKGVRTITKSGR-FQVRS 479
            M+ SLFI+++ GEV+IEKHWR +TPR VCDFFWDEVN++     VPP++  SK+ L+++YR+++FL+ T   ++  L V+EFLHRVLDI  +Y GG +D+++IK++FS VYQLLEEMMDNG+PLTTEPNALKAMIRPPT   R+  AATGK+  VS+VLPDGTVS MPWRK+GVKYSQNE+YLDI+EE+DAI++ +GQ+VS+EVSG I ANSRLSGIPD+ L+F DP VIDDC+FHPCVRY R+E+DR VSFVPPDG FELMRYRV       + PP+YC   I Y     + G+S G + + +G R    L    +  S+  EDV V V  PK V+T +L  + GT L+DEA KV KW +GK+  ++++  ++G++ + G +PEESPP+Q+ WKVPMASVSGLA+ SLQ+ NE+YRPYKGVRT+TKSG+ FQVR+
Sbjct:    1 MIQSLFIMSKTGEVMIEKHWRGITPRNVCDFFWDEVNRHDVPEAVPPILQTSKHNLIHVYRDDVFLLATCTEDVSTLGVIEFLHRVLDIMGDYFGGNVDESAIKESFSLVYQLLEEMMDNGHPLTTEPNALKAMIRPPTTFVRMVTAATGKS-NVSDVLPDGTVSAMPWRKAGVKYSQNEVYLDIIEELDAILNVNGQIVSSEVSGTIQANSRLSGIPDMLLVFQDPSVIDDCSFHPCVRYGRFEKDRVVSFVPPDGHFELMRYRVRDHLQMNVTPPVYCNPTISYED---DYGSSQGHIHIAVGHRHGSSLKFPPRKGSMVVEDVTVTVQFPKVVRTADLHVSSGTCLFDEALKVAKWNLGKL-FKDKSATMTGTLSIQGPKPEESPPVQLSWKVPMASVSGLAITSLQVFNEKYRPYKGVRTLTKSGKNFQVRT 431          
BLAST of NO06G00080 vs. NCBI_GenBank
Match: OWZ23297.1 (P-3 complex subunit mu [Phytophthora megakarya])

HSP 1 Score: 528.1 bits (1359), Expect = 2.900e-146
Identity = 253/434 (58.29%), Postives = 333/434 (76.73%), Query Frame = 0
Query:   47 MLHSLFILNQHGEVLIEKHWRSVTPRAVCDFFWDEVNKYPDKLDVPPLIAASKYYLVNIYREELFLVGTMLSEIPPLLVVEFLHRVLDIFSEYLGGLDDASIKDNFSTVYQLLEEMMDNGYPLTTEPNALKAMIRPPTLLSRLEAAATGKARGVSEVLPDGTVSNMPWRKSGVKYSQNEIYLDIVEEMDAIVDCSGQVVSAEVSGFIFANSRLSGIPDLSLMFVDPDVIDDCAFHPCVRYNRYERDRTVSFVPPDGQFELMRYRVTPPQALVPPIYCTAQIVYASSAGNDGTSSGRLTLTLGCRPSHCLVLSNKGKSVAFEDVVVVVPLPKAVKTTNLQANVGTVLYDEASKVVKWTIGKMSCRERNPQLSGSMVL--AGARPEESPPIQVDWKVPMASVSGLAVLSLQLLNERYRPYKGVRTITKSGRFQVRS 479
            M+ S+FI+   GEV+IEKHWR +T R VCDFF +EVNKY ++ DVPP+I  SKYYLV+++R++LF++  + +EI PL V+EFLHRVL +F +Y G  D+ S+KDNFSTVYQLLEEM+DNGYPLTTEPNALKAM+ PP+  +R+ A  +GK+R VS  LPDG +SN+PWRKSGV+Y+QNEIY DIVEE+DAI+D SG+++S EV+G I +NSRLSG+PDL+++F DP VIDDC+FHPCVRY+RYER+R +SFVPPDGQFELM+YRV   Q LVPP+YC  QI Y    G      G L LT+G R    L  SN  K++  EDV V V  PK+V+T ++    GT L+DEASK VKW +GK+  +  NP L G+++L  + A P+E P + + +KVPM++VSGL V +L + NE+Y+PYKGVRT+TK+GRFQ+R+
Sbjct:    1 MIQSMFIMTTTGEVIIEKHWRGLTSRNVCDFFMEEVNKYREREDVPPIITTSKYYLVSVFRDDLFVLAVVTNEISPLFVIEFLHRVLAVFRDYFGNFDENSMKDNFSTVYQLLEEMLDNGYPLTTEPNALKAMVAPPSTANRIAAMVSGKSR-VSNTLPDGAISNIPWRKSGVRYTQNEIYFDIVEEIDAIIDVSGRMISCEVNGVIHSNSRLSGVPDLTMVFTDPSVIDDCSFHPCVRYSRYERERVISFVPPDGQFELMQYRV-QVQELVPPVYCQPQITYKEKGG------GTLDLTIGTRGMPTL-NSNAKKNLQVEDVTVEVTFPKSVRTVDVNTEHGTCLFDEASKTVKWNVGKLGKKVLNPSLRGNIILHQSAAVPDEKPVVLLGFKVPMSTVSGLNVETLLITNEKYKPYKGVRTMTKAGRFQIRT 425          
BLAST of NO06G00080 vs. NCBI_GenBank
Match: ETK89843.1 (hypothetical protein L915_06273 [Phytophthora parasitica] >ETP19733.1 hypothetical protein F441_06394 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 525.4 bits (1352), Expect = 1.900e-145
Identity = 251/434 (57.83%), Postives = 333/434 (76.73%), Query Frame = 0
Query:   47 MLHSLFILNQHGEVLIEKHWRSVTPRAVCDFFWDEVNKYPDKLDVPPLIAASKYYLVNIYREELFLVGTMLSEIPPLLVVEFLHRVLDIFSEYLGGLDDASIKDNFSTVYQLLEEMMDNGYPLTTEPNALKAMIRPPTLLSRLEAAATGKARGVSEVLPDGTVSNMPWRKSGVKYSQNEIYLDIVEEMDAIVDCSGQVVSAEVSGFIFANSRLSGIPDLSLMFVDPDVIDDCAFHPCVRYNRYERDRTVSFVPPDGQFELMRYRVTPPQALVPPIYCTAQIVYASSAGNDGTSSGRLTLTLGCRPSHCLVLSNKGKSVAFEDVVVVVPLPKAVKTTNLQANVGTVLYDEASKVVKWTIGKMSCRERNPQLSGSMVL--AGARPEESPPIQVDWKVPMASVSGLAVLSLQLLNERYRPYKGVRTITKSGRFQVRS 479
            M+ S+FI+   GEV+IEKHWR +T R VCDFF +EVNKY ++ DVPP+I  SKYYLV+++R++LF++  + +EI PL V+EFLHRVL +F +Y G  D+ S+KDNFSTVYQLLEEM+DNGYPLTTEPNALKAM+ PP+  +R+ A  +GK+R VS  LPDGT+SN+PWRK+GV+Y+QNEIY DIVEE+DAI+D SG+++S EV+G I +NSRLSG+PDL+++F DP VIDDC+FHPCVRY+RYER+R +SFVPPDGQFELM+YRV   Q LVPP+YC  QI Y    G      G L L +G R    L  SN  K++  EDV V V  PK+V+T ++    GT L+DEASK VKW +GK+  +  NP L G+++L  + + P+E P + + +KVPM++VSGL V +L + NE+Y+PYKGVRT+TK+GRFQ+R+
Sbjct:    1 MIQSMFIMTTTGEVIIEKHWRGITSRNVCDFFMEEVNKYREREDVPPIITTSKYYLVSVFRDDLFVLAVVTNEISPLFVIEFLHRVLAVFRDYFGNFDENSMKDNFSTVYQLLEEMLDNGYPLTTEPNALKAMVAPPSTANRIAAMVSGKSR-VSNTLPDGTISNIPWRKAGVRYTQNEIYFDIVEEIDAIIDVSGRMISCEVNGAIHSNSRLSGVPDLTMVFTDPSVIDDCSFHPCVRYSRYERERVISFVPPDGQFELMQYRV-QVQELVPPVYCQPQISYKEKGG------GTLDLVIGTRGMPTL-NSNAKKNLQVEDVTVEVTFPKSVRTVDVNTEHGTCLFDEASKTVKWNVGKLGKKVLNPSLRGNIILHQSASVPDEKPVVVLGFKVPMSTVSGLNVETLLITNEKYKPYKGVRTMTKAGRFQIRT 425          
BLAST of NO06G00080 vs. NCBI_GenBank
Match: XP_009519208.1 (hypothetical protein PHYSODRAFT_485001 [Phytophthora sojae] >EGZ23920.1 hypothetical protein PHYSODRAFT_485001 [Phytophthora sojae])

HSP 1 Score: 524.6 bits (1350), Expect = 3.200e-145
Identity = 251/434 (57.83%), Postives = 332/434 (76.50%), Query Frame = 0
Query:   47 MLHSLFILNQHGEVLIEKHWRSVTPRAVCDFFWDEVNKYPDKLDVPPLIAASKYYLVNIYREELFLVGTMLSEIPPLLVVEFLHRVLDIFSEYLGGLDDASIKDNFSTVYQLLEEMMDNGYPLTTEPNALKAMIRPPTLLSRLEAAATGKARGVSEVLPDGTVSNMPWRKSGVKYSQNEIYLDIVEEMDAIVDCSGQVVSAEVSGFIFANSRLSGIPDLSLMFVDPDVIDDCAFHPCVRYNRYERDRTVSFVPPDGQFELMRYRVTPPQALVPPIYCTAQIVYASSAGNDGTSSGRLTLTLGCRPSHCLVLSNKGKSVAFEDVVVVVPLPKAVKTTNLQANVGTVLYDEASKVVKWTIGKMSCRERNPQLSGSMVL--AGARPEESPPIQVDWKVPMASVSGLAVLSLQLLNERYRPYKGVRTITKSGRFQVRS 479
            M+ S+FI+   GEV+IEKHWR +T R VCDFF +EVNKY ++ DVPP+I  SKYYLV+++R++LF++  + +EI PL V+EFLHRVL +F +Y G  D+ S+KDNFSTVYQLLEEM+DNGYPLTTEPNALKAM+ PP+  +R+ A  +GK+R VS  LPDG +SN+PWRKSGV+Y+QNEIY DIVEE+DAI+D SG+++S EV+G I +NSRLSG+PDL+++F DP VIDDC+FHPCVRY+RYER+R +SFVPPDGQFELM+YRV   Q LVPP+YC  QI Y    G      G L L +G R    L  SN  K++  EDV V V  PK+V+T ++    GT L+DEA+K VKW +GK+  +  NP L G+++L  + A P+E P + + +KVPM++VSGL V +L + NE+Y+PYKGVRT+TK+GRFQ+R+
Sbjct:    1 MIQSMFIMTTTGEVIIEKHWRGLTSRNVCDFFMEEVNKYREREDVPPIITTSKYYLVSVFRDDLFVLAVVTNEISPLFVIEFLHRVLAVFRDYFGNFDENSMKDNFSTVYQLLEEMLDNGYPLTTEPNALKAMVAPPSTANRIAAMVSGKSR-VSNTLPDGAISNIPWRKSGVRYTQNEIYFDIVEEIDAIIDVSGRMISCEVNGVIHSNSRLSGVPDLTMVFTDPSVIDDCSFHPCVRYSRYERERVISFVPPDGQFELMQYRV-QVQELVPPVYCQPQITYNEKGG------GTLDLVIGTRGMPTL-NSNAKKNLQVEDVTVEVTFPKSVRTVDVNTEHGTCLFDEATKTVKWNVGKLGKKVLNPSLRGNIILHQSAAVPDEKPVVLLGFKVPMSTVSGLNVETLLITNEKYKPYKGVRTMTKAGRFQIRT 425          
BLAST of NO06G00080 vs. NCBI_GenBank
Match: XP_008891852.1 (hypothetical protein PPTG_02502 [Phytophthora parasitica INRA-310] >ETI49954.1 hypothetical protein F443_06388 [Phytophthora parasitica P1569] >ETL96430.1 hypothetical protein L917_06082 [Phytophthora parasitica] >ETM49586.1 hypothetical protein L914_06205 [Phytophthora parasitica] >ETN22619.1 hypothetical protein PPTG_02502 [Phytophthora parasitica INRA-310] >ETO78666.1 hypothetical protein F444_06452 [Phytophthora parasitica P1976] >ETP47656.1 hypothetical protein F442_06433 [Phytophthora parasitica P10297] >KUF76565.1 AP-3 complex subunit mu-1 [Phytophthora nicotianae] >KUF96951.1 hypothetical protein AM588_10010256 [Phytophthora nicotianae])

HSP 1 Score: 523.5 bits (1347), Expect = 7.000e-145
Identity = 250/434 (57.60%), Postives = 332/434 (76.50%), Query Frame = 0
Query:   47 MLHSLFILNQHGEVLIEKHWRSVTPRAVCDFFWDEVNKYPDKLDVPPLIAASKYYLVNIYREELFLVGTMLSEIPPLLVVEFLHRVLDIFSEYLGGLDDASIKDNFSTVYQLLEEMMDNGYPLTTEPNALKAMIRPPTLLSRLEAAATGKARGVSEVLPDGTVSNMPWRKSGVKYSQNEIYLDIVEEMDAIVDCSGQVVSAEVSGFIFANSRLSGIPDLSLMFVDPDVIDDCAFHPCVRYNRYERDRTVSFVPPDGQFELMRYRVTPPQALVPPIYCTAQIVYASSAGNDGTSSGRLTLTLGCRPSHCLVLSNKGKSVAFEDVVVVVPLPKAVKTTNLQANVGTVLYDEASKVVKWTIGKMSCRERNPQLSGSMVL--AGARPEESPPIQVDWKVPMASVSGLAVLSLQLLNERYRPYKGVRTITKSGRFQVRS 479
            M+ S+FI+   GEV+IEKHWR +T R VCDFF +EVNKY ++ DVPP+I  SKYYLV+++R++LF++  + +EI PL V+EFLHRVL +F +Y G  D+ S+KDNFSTVYQLLEEM+DNGYPLTTEPNALKAM+ PP+  +R+ A  +GK+R VS  LPDG +SN+PWRK+GV+Y+QNEIY DIVEE+DAI+D SG+++S EV+G I +NSRLSG+PDL+++F DP VIDDC+FHPCVRY+RYER+R +SFVPPDGQFELM+YRV   Q LVPP+YC  QI Y    G      G L L +G R    L  SN  K++  EDV V V  PK+V+T ++    GT L+DEASK VKW +GK+  +  NP L G+++L  + + P+E P + + +KVPM++VSGL V +L + NE+Y+PYKGVRT+TK+GRFQ+R+
Sbjct:    1 MIQSMFIMTTTGEVIIEKHWRGITSRNVCDFFMEEVNKYREREDVPPIITTSKYYLVSVFRDDLFVLAVVTNEISPLFVIEFLHRVLAVFRDYFGNFDENSMKDNFSTVYQLLEEMLDNGYPLTTEPNALKAMVAPPSTANRIAAMVSGKSR-VSNTLPDGAISNIPWRKAGVRYTQNEIYFDIVEEIDAIIDVSGRMISCEVNGAIHSNSRLSGVPDLTMVFTDPSVIDDCSFHPCVRYSRYERERVISFVPPDGQFELMQYRV-QVQELVPPVYCQPQISYKEKGG------GTLDLVIGTRGMPTL-NSNAKKNLQVEDVTVEVTFPKSVRTVDVNTEHGTCLFDEASKTVKWNVGKLGKKVLNPSLRGNIILHQSASVPDEKPVVVLGFKVPMSTVSGLNVETLLITNEKYKPYKGVRTMTKAGRFQIRT 425          
BLAST of NO06G00080 vs. NCBI_GenBank
Match: ETL43243.1 (hypothetical protein L916_06210 [Phytophthora parasitica])

HSP 1 Score: 522.3 bits (1344), Expect = 1.600e-144
Identity = 249/434 (57.37%), Postives = 332/434 (76.50%), Query Frame = 0
Query:   47 MLHSLFILNQHGEVLIEKHWRSVTPRAVCDFFWDEVNKYPDKLDVPPLIAASKYYLVNIYREELFLVGTMLSEIPPLLVVEFLHRVLDIFSEYLGGLDDASIKDNFSTVYQLLEEMMDNGYPLTTEPNALKAMIRPPTLLSRLEAAATGKARGVSEVLPDGTVSNMPWRKSGVKYSQNEIYLDIVEEMDAIVDCSGQVVSAEVSGFIFANSRLSGIPDLSLMFVDPDVIDDCAFHPCVRYNRYERDRTVSFVPPDGQFELMRYRVTPPQALVPPIYCTAQIVYASSAGNDGTSSGRLTLTLGCRPSHCLVLSNKGKSVAFEDVVVVVPLPKAVKTTNLQANVGTVLYDEASKVVKWTIGKMSCRERNPQLSGSMVL--AGARPEESPPIQVDWKVPMASVSGLAVLSLQLLNERYRPYKGVRTITKSGRFQVRS 479
            M+ S+FI+   GEV+IEKHWR +T R VCDFF +EVNKY ++ DVPP+I  SKYYLV+++R++LF++  + +EI PL V+EFLHRVL +F +Y G  D+ S+KDNFSTVYQLLEEM+DNGYPLTTEPNALKAM+ PP+  +R+ A  +GK+R VS  LPDG +SN+PWRK+GV+Y+QNEIY DIVEE+DAI+D SG+++S EV+G I +NSRLSG+PDL+++F DP VIDDC+FHPCVRY+RYER+R +SFVPPDGQFELM+YRV   Q LVPP+YC  QI Y    G      G L + +G R    L  SN  K++  EDV V V  PK+V+T ++    GT L+DEASK VKW +GK+  +  NP L G+++L  + + P+E P + + +KVPM++VSGL V +L + NE+Y+PYKGVRT+TK+GRFQ+R+
Sbjct:    1 MIQSMFIMTTTGEVIIEKHWRGITSRNVCDFFMEEVNKYREREDVPPIITTSKYYLVSVFRDDLFVLAVVTNEISPLFVIEFLHRVLAVFRDYFGNFDENSMKDNFSTVYQLLEEMLDNGYPLTTEPNALKAMVAPPSTANRIAAMVSGKSR-VSNTLPDGAISNIPWRKAGVRYTQNEIYFDIVEEIDAIIDVSGRMISCEVNGAIHSNSRLSGVPDLTMVFTDPSVIDDCSFHPCVRYSRYERERVISFVPPDGQFELMQYRV-QVQELVPPVYCQPQISYKEKGG------GTLDVVIGTRGMPTL-NSNAKKNLQVEDVTVEVTFPKSVRTVDVNTEHGTCLFDEASKTVKWNVGKLGKKVLNPSLRGNIILHQSASVPDEKPVVVLGFKVPMSTVSGLNVETLLITNEKYKPYKGVRTMTKAGRFQIRT 425          
BLAST of NO06G00080 vs. NCBI_GenBank
Match: XP_002997924.1 (P-3 complex subunit mu, putative [Phytophthora infestans T30-4] >EEY67762.1 P-3 complex subunit mu, putative [Phytophthora infestans T30-4])

HSP 1 Score: 521.5 bits (1342), Expect = 2.700e-144
Identity = 249/434 (57.37%), Postives = 331/434 (76.27%), Query Frame = 0
Query:   47 MLHSLFILNQHGEVLIEKHWRSVTPRAVCDFFWDEVNKYPDKLDVPPLIAASKYYLVNIYREELFLVGTMLSEIPPLLVVEFLHRVLDIFSEYLGGLDDASIKDNFSTVYQLLEEMMDNGYPLTTEPNALKAMIRPPTLLSRLEAAATGKARGVSEVLPDGTVSNMPWRKSGVKYSQNEIYLDIVEEMDAIVDCSGQVVSAEVSGFIFANSRLSGIPDLSLMFVDPDVIDDCAFHPCVRYNRYERDRTVSFVPPDGQFELMRYRVTPPQALVPPIYCTAQIVYASSAGNDGTSSGRLTLTLGCRPSHCLVLSNKGKSVAFEDVVVVVPLPKAVKTTNLQANVGTVLYDEASKVVKWTIGKMSCRERNPQLSGSMVL--AGARPEESPPIQVDWKVPMASVSGLAVLSLQLLNERYRPYKGVRTITKSGRFQVRS 479
            M+ S+FI+   GEV+IEKHWR +T R VCDFF +EVNKY ++ DVPP+I  SKYYLV+++R++LF++  + +EI PL V+EFLHRVL +F +Y G  D+ S+KDNFSTVYQLLEEM+DNGYPLTTEPNALKAM+ PP+  +R+ A  +GK+R VS  LPDG +SN+PWRKSGV+Y+QNEIY DIVEE+D I+D SG+++S EV+G I +NSRLSG+PDL+++F DP VIDDC+FHPCVRY+RYER+R +SFVPPDGQFELM+YRV   Q LVPP+YC  QI Y    G      G L L +G R    L  SN  K++  E+V V V  PK+V+T ++    GT L+DEASK VKW +GK+  +  NP L G+++L  + + P+E P + + +KVPM++VSGL V +L + NE+Y+PYKGVRT+TK+GRFQ+R+
Sbjct:    1 MIQSMFIMTTTGEVIIEKHWRGITSRNVCDFFMEEVNKYREREDVPPIITTSKYYLVSVFRDDLFVLAVVTNEISPLFVIEFLHRVLAVFRDYFGNFDENSMKDNFSTVYQLLEEMLDNGYPLTTEPNALKAMVAPPSTANRIAAMVSGKSR-VSNTLPDGAISNIPWRKSGVRYTQNEIYFDIVEEIDTIIDVSGRMLSCEVNGVIHSNSRLSGVPDLTMVFTDPSVIDDCSFHPCVRYSRYERERVISFVPPDGQFELMQYRV-QVQELVPPVYCQPQIAYNDKGG------GTLDLVIGTRGMPTL-NSNAKKNLQVEEVTVEVTFPKSVRTVDVNTEHGTCLFDEASKTVKWNVGKLGKKVLNPSLRGNIILHQSASVPDEKPVVVLGFKVPMSTVSGLNVETLLITNEKYKPYKGVRTMTKAGRFQIRT 425          
BLAST of NO06G00080 vs. NCBI_GenBank
Match: XP_024574590.1 (p-3 complex subunit [Plasmopara halstedii] >CEG38221.1 p-3 complex subunit [Plasmopara halstedii])

HSP 1 Score: 511.9 bits (1317), Expect = 2.100e-141
Identity = 246/434 (56.68%), Postives = 329/434 (75.81%), Query Frame = 0
Query:   47 MLHSLFILNQHGEVLIEKHWRSVTPRAVCDFFWDEVNKYPDKLDVPPLIAASKYYLVNIYREELFLVGTMLSEIPPLLVVEFLHRVLDIFSEYLGGLDDASIKDNFSTVYQLLEEMMDNGYPLTTEPNALKAMIRPPTLLSRLEAAATGKARGVSEVLPDGTVSNMPWRKSGVKYSQNEIYLDIVEEMDAIVDCSGQVVSAEVSGFIFANSRLSGIPDLSLMFVDPDVIDDCAFHPCVRYNRYERDRTVSFVPPDGQFELMRYRVTPPQALVPPIYCTAQIVYASSAGNDGTSSGRLTLTLGCRPSHCLVLSNKGKSVAFEDVVVVVPLPKAVKTTNLQANVGTVLYDEASKVVKWTIGKMSCRERNPQLSGSMVL--AGARPEESPPIQVDWKVPMASVSGLAVLSLQLLNERYRPYKGVRTITKSGRFQVRS 479
            M+ S+FIL  +GEV+IEKH R +T R VCDFF +EVNKY ++ DVPP+I  SKY+LV+++R++LF++  + +EI PL V+EFLHRVL +F +Y G  D+ S+KDNFSTVYQLLEEM+DNGYPLTTEPNALKAM+ PP+  +R+ A  +GK+R VS  LPDG +SN+PWRKSGV+Y+QNEIY DIVEE+DAI+D SG+++S EV+G I +NSRLSG+PDL+++F DP VIDDC+FHPCVRY+RYER+R +SFVPPDGQFELM+YRV   Q LVPP+YC  QI Y    G        L L +G R    L  SN  KS+  E+V V V  PK+V+T ++    G+ L+DE +K VKW +GK+  +  NP L G+++L  +   P+E P + + +KVPM++VSGL V +L + NE+Y+PYKGVRT+TK+GRFQ+R+
Sbjct:    1 MIQSMFILTANGEVIIEKHCRGLTSRNVCDFFMEEVNKYREREDVPPIITTSKYFLVSVFRDDLFVLAVVTNEISPLFVIEFLHRVLAVFRDYFGNFDENSMKDNFSTVYQLLEEMLDNGYPLTTEPNALKAMVAPPSTANRIAAMVSGKSR-VSNTLPDGAISNIPWRKSGVRYTQNEIYFDIVEEIDAIIDVSGRMISCEVNGVIQSNSRLSGVPDLTMVFTDPSVIDDCSFHPCVRYSRYERERVISFVPPDGQFELMQYRV-QVQELVPPVYCQPQITYKDKGGT-------LDLVIGTRGMPTL-NSNAKKSLQVENVTVEVSFPKSVRTVDVNTEYGSCLFDETTKTVKWNVGKLGKKVLNPSLRGNIILHPSALVPDEKPIVVLGFKVPMSTVSGLNVETLLITNEKYKPYKGVRTMTKAGRFQIRT 424          
BLAST of NO06G00080 vs. NCBI_GenBank
Match: XP_008619341.1 (hypothetical protein SDRG_14958 [Saprolegnia diclina VS20] >EQC27242.1 hypothetical protein SDRG_14958 [Saprolegnia diclina VS20])

HSP 1 Score: 506.9 bits (1304), Expect = 6.800e-140
Identity = 246/435 (56.55%), Postives = 332/435 (76.32%), Query Frame = 0
Query:   47 MLHSLFILNQHGEVLIEKHWRSVTPRAVCDFFWDEVNKYPDKLDVPPLIAASKYYLVNIYREELFLVGTMLSEIPPLLVVEFLHRVLDIFSEYLGGLDDASIKDNFSTVYQLLEEMMDNGYPLTTEPNALKAMIRPPTLLSRLEAAATGKARGVSEVLPDGTVSNMPWRKSGVKYSQNEIYLDIVEEMDAIVDCSGQVVSAEVSGFIFANSRLSGIPDLSLMFVDPDVIDDCAFHPCVRYNRYERDRTVSFVPPDGQFELMRYRVTPPQALVPPIYCTAQIVYASSAGNDGTSSGRLTLTLGCRPSHCLVLSNKGKSVAFEDVVVVVPLPKAVKTTNLQANVGTVLYDEASKVVKWTIGKMSCRE-RNPQLSGSMVLA--GARPEESPPIQVDWKVPMASVSGLAVLSLQLLNERYRPYKGVRTITKSGRFQVRS 479
            M+ SLFI+   GE++IEKHWR  T R VCDFF +EVNKY  + DVPP+IA +K+YL++ +RE+L+++  + +E+ PL+V+E LHRV+ +F +Y G  D+++IKDNFSTVYQLLEEM+DNGYPLT EPNALKAM+ PP+ ++RL A  +GK+R VSEVLPDG VS+MPWRK+GVKY+QNEIY DIVEE+DAIVD +GQ++S EV+G I  N RLSGIPDL+++F DP VIDDC+FHPCVRY+RY+R+R +SFVPPDGQFELM+YRV   Q +VPPIYC   + Y+          G L L +G R    LV ++  KS A E++ V V  PK+V+T +   +VG+ L+D+A+K +KWT+GK++ ++   P L G++VL    A P+E P + + +KVPM +VSGL V +L L NERY+PYKGVRT+TK+GRFQ+R+
Sbjct:    1 MIQSLFIITPTGEIIIEKHWRGTTNRNVCDFFVEEVNKYKAREDVPPVIATAKHYLISAFREQLYILAVVTNEVSPLVVIEVLHRVVAVFLDYFGKFDESAIKDNFSTVYQLLEEMLDNGYPLTMEPNALKAMVAPPSTVNRLTAMVSGKSR-VSEVLPDGAVSDMPWRKAGVKYTQNEIYFDIVEEIDAIVDGNGQMISCEVNGAIHGNCRLSGIPDLTMVFTDPSVIDDCSFHPCVRYSRYDRERVISFVPPDGQFELMQYRV-QVQQMVPPIYCQPSVSYSE------RGVGTLELMIGQRNMPTLVANSVKKSFAAEEITVEVTFPKSVRTVDANTDVGSCLFDDATKTLKWTVGKINPKKILTPTLKGNIVLVQNAAIPDEKPIVLLGFKVPMTTVSGLTVETLVLSNERYKPYKGVRTLTKAGRFQIRT 427          
The following BLAST results are available for this feature:
BLAST of NO06G00080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009041098.11.300e-15963.74hypothetical protein AURANDRAFT_55259 [Aureococcus... [more]
CBJ25994.11.700e-14658.94Clathrin assembly complex, medium subunit [Ectocar... [more]
OWZ23297.12.900e-14658.29P-3 complex subunit mu [Phytophthora megakarya][more]
ETK89843.11.900e-14557.83hypothetical protein L915_06273 [Phytophthora para... [more]
XP_009519208.13.200e-14557.83hypothetical protein PHYSODRAFT_485001 [Phytophtho... [more]
XP_008891852.17.000e-14557.60hypothetical protein PPTG_02502 [Phytophthora para... [more]
ETL43243.11.600e-14457.37hypothetical protein L916_06210 [Phytophthora para... [more]
XP_002997924.12.700e-14457.37P-3 complex subunit mu, putative [Phytophthora inf... [more]
XP_024574590.12.100e-14156.68p-3 complex subunit [Plasmopara halstedii] >CEG382... [more]
XP_008619341.16.800e-14056.55hypothetical protein SDRG_14958 [Saprolegnia dicli... [more]

Pages

back to top
Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00080.1NO06G00080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00080.1NO06G00080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00080 ID=NO06G00080|Name=NO06G00080|organism=Nannochloropsis oceanica|type=gene|length=4567bp
ATGGCTGAATGGCAGCTAATGGCGGTGGATGGTGCTGTGTGTTTCTTTGC
gtgcgtgcgtagttatttggagtgtttgagtatttgagtctatgaacttg
tgaggaatggaaccggaagggattgcagactttgcaacggcttcattctt
gttgaggcctttgcacccctctaagaggcaattatcccgcctcattccca
ttttcccgttaattatttgcagggatacacaaagcgtttacctgaaaacc
tggtaccggctagggaaatgtgcctggattgatttccctttgcagccgcc
tcattcctttcctatctctctctttgcccccttccgctatacagACCCGG
CCGAGGAGCACTAAGCACACAAGTACCGCGATACAAGCGCCAAGAGGAAG
AGGCCAAGGCGTTCCAACATATCGTGGCAGCTATGCTGCACTCTCTCTTC
ATCCTGAACCAGCACGGgtatgtacgaagggattgaaggagtgagagaag
gagggaggggggggtggggcttagatggaggccgtcgtaggctgcttcat
acacttggtatgtgtgataactgtgaggaatcatctccatcgacatgaat
ttcctcccctccctctccccctccctctctctcccccgctctgccatacc
ctacagCGAGGTCCTCATCGAGAAGCACTGGCGAAGCGTTACCCCGCGCG
CCGTCTGCGATTTCTTTTGGGACGAAGTAAATAAATATCCGGACAAGCTG
gtgagggatggagggagggaaagagggatggagggagggaaggatgggag
gaaatgatagcacatcgaataaacgcagtatgtcgacatttcccgcatcc
cccccctccctccctcctttgacccttccgcctccctttctcacttccta
ttgttcttagGACGTTCCTCCCCTCATCGCCGCCTCCAAGTACTACCTTG
TCAACATCTACCGAGAGGAGCTCTTCCTCgtaagcccctgccctctcctc
cttgtttccctcccttccttcctcctccttgtctcgtgatttcatctatg
agctccgtccactctatacatgtctcccatacggccttccctccctcctc
tcattccacctttcctcgtactcctccttccctctccacagGTCGGCACG
ATGTTATCCGAAATCCCTCCTCTCCTGGTCGTGGAGTTTCTGCACCGAGT
CTTGGACATCTTCAGgtgcctccctccctccctccctccctccctcccct
ccctcactccctccttctatccccttcccctttccttcttccgtggagtc
tcctggtcaaccttttcatcgactgacatgcgccctgcctctttttccac
tgcttgcatcccccccccccttcctttcctccctccctccctccctcccc
ctagTGAATATCTAGGCGGCTTGGACGACGCCTCCATCAAGGATAATTTC
TCCACTGTTTACCAAgtacgtcctctctccctccctccctccctccctcc
ctccctccctcccttccttcctcttttgctctgctcatttatccacgctt
ccctccctccctccctccttccctccctccagCTCTTGGAGGAGATGATG
GATAACGGCTACCCCCTCACCACCGAGCCAAACGCCCTCAAGgtagggag
ggagggagcgaggaagggaattgagggaaagagaaggggatgtgtgattg
ttagatgaaatcactaaatcctctcgcccttgttggggtccctccctccc
tccctccctccctcctcagGCCATGATCCGCCCTCCCACGCTCCTCTCCC
GCCTCGAAGCCGCTGCCACTGGGAAAGCCCGCGGCGTCTCGGAGGTCCTG
CCTGATGGCACCGTGTCGAAgtagggagggagggagggagggatcgaggc
agggattctatcctccccctggctggcttgcaaaccgcactcaagaataa
tgctcctactcatgtcactcgcactcctcccccctccctccctccctccc
tccctccctccctccctccctccctccctcccagCATGCCCTGGCGGAAG
AGCGGAGTGAAGTACAGTCAGAACGAAATCTACCTCGATATTGTGGAGGA
AATGGATGCGATTGTCGACTGCAGTGGCCAGgtacgccctccctccctcc
ccccctccctccctccctccctttctccctccctccctacttcttcattt
cctccctcccttcctccctctccacagGTCGTCTCTGCCGAGGTATCGGG
ATTCATTTTCGCCAACTCCCGCCTCAGTGgtacgccctccctccctccct
ccctccctccctccctccctctccacgttgtctcaagccgagtgccctct
cctatatttcttcccttcttccctccttcccttcctccctcccttcctcc
ctcccttcctccctccagGCATCCCGGACTTGAGCTTGATGTTTGTCGAT
CCCGACGTCATCGACGACTGTGCTTTTCATCCATgtgaggaagggaggca
gggagggaggcagggagggaaggggggggggtaataaaagagagcaggat
tttgatttcattcttggaaggaaggaaggagggaaggagggagagaggga
gggaaggagggagataaggagggctgacgcatgtaacatccaatcctgtt
ctcaacatttctcccctccgtccatccctccccccttcctttcttctctc
cctcagGCGTGCGTTACAACCGTTACGAGCGCGATCGAACCGTTTCCTTC
GTCCCGCCCGACGGGCAGTTTGAGgtactgcatcaatcgggaggggaggg
agtgaaagaagggatatcgaagtcaggacaacatgcatgtgtgtggaagc
atctactctactcaccactttcccctcatttcctccctctcttcctagCT
AATGCGGTACCGTGTGACCCCCCCCCAGGCCCTGGTGCCTCCCATCTACT
GCACAGCGCAGgtagggagggagggaggaagggacggagggagggagagt
gagcccctcctgagggcacgtcacatgtccactcgccgccgaccttccct
ccctccctccctccctccatccatccattcagATCGTGTACGCCTCCTCG
GCAGGCAACGACGGCACAAGCAGTGGCCGCCTGACCTTGACGTTGGGCTG
CCGGCCATCCCACTGCTTGGTCCTGAGCAACAAGGGAAAGAGgtggatag
ggaggaagggaggaaaggaggggaagggggaaggggggactgaagaaaaa
gtttgaaatgctcgctcactgctcgcaattgcctggccccgctgtatccg
aacgatcctcccctccctccctctctccctccctccatccctccatcctt
ccctccctcagCGTGGCGTTCGAGGACGTGGTAGTGGTCGTTCCCCTCCC
CAAGGCCGTCAAAACCACGAACTTGCAGGCTAATGTAGGCACAGTCCTCT
ACGATGAGGCCAGTAAGgtagggagggagggagggagggacggagggacg
gagaagaggagagagcaatggagagagctggacgaactgaaggaagctca
ttagaaaccgatttcctcaacaacgaaaatcattacatgtgaataatcaa
attcccaccttcacaaatcacgatagaatataaagggaatgatgacttta
tcataatatgaatgattagaactgaatcataatacaaattacaattccac
cagGTGGTGAAATGGACAATTGGCAAGATGAGTTGTCGGGAGCGAAACCC
ACAACTTTCAGgtgtgtacagagggggaggatgggagggggaagggtcaa
gagggagggcatggaaatgaccgttttcgttgctgatacgttgatttacc
atttgggtgtcaccatacgtgcatgcatccccctccccccctccctccac
tcccaccctccgcagGCTCCATGGTCTTGGCGGGCGCACGGCCCGAGGAG
TCACCGCCCATTCAAGTAGATTGGAAGgtaggctgcttgagacgtttcct
gccctccctccttcgctccttccctccctccctccctcctttttccggtg
ccccacctgctgtgacttttcttcctacttgtactaaaccctccctcctt
ccctctctccctcccgtccgccctcccttcttggccagGTGCCCATGGCG
TCAGTCTCGGGCCTGGCCGTCCTGTCCCTGCAGCTCCTCAACGAGCGATA
TCGACCTTATAAAGgtgggccgggtggatagccacgggagagggaggaaa
ggagggagggagggagcgagggagggagggagcgagggagggagagagag
agagagggagaatgtacacacaactataacccgtacatacgttcaaccct
gcccctgctctatcgtctcttcccacacgctcctccgaatgcagGCGTTC
GAACCATCACCAAATCGGGTCGCTTTCAGGTCCGCTCGAGCTAGGAGACG
GAGGAGAGCGTGGGATACAAAGAGCCCGGCATACCAAAACGGAAACCAAC
AAAGAGCGACTCATTCCACACGAAAGGGGCAGGAAGATGAAGGGATGAAT
CAAAAATACTGGGGTTT
back to top

protein sequence of NO06G00080.1

>NO06G00080.1-protein ID=NO06G00080.1-protein|Name=NO06G00080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=480bp
MAEWQLMAVDGAVCFFAPGRGALSTQVPRYKRQEEEAKAFQHIVAAMLHS
LFILNQHGEVLIEKHWRSVTPRAVCDFFWDEVNKYPDKLDVPPLIAASKY
YLVNIYREELFLVGTMLSEIPPLLVVEFLHRVLDIFSEYLGGLDDASIKD
NFSTVYQLLEEMMDNGYPLTTEPNALKAMIRPPTLLSRLEAAATGKARGV
SEVLPDGTVSNMPWRKSGVKYSQNEIYLDIVEEMDAIVDCSGQVVSAEVS
GFIFANSRLSGIPDLSLMFVDPDVIDDCAFHPCVRYNRYERDRTVSFVPP
DGQFELMRYRVTPPQALVPPIYCTAQIVYASSAGNDGTSSGRLTLTLGCR
PSHCLVLSNKGKSVAFEDVVVVVPLPKAVKTTNLQANVGTVLYDEASKVV
KWTIGKMSCRERNPQLSGSMVLAGARPEESPPIQVDWKVPMASVSGLAVL
SLQLLNERYRPYKGVRTITKSGRFQVRSS*
back to top
Synonyms
Publications