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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:39591..44157 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G00080.1 vs.
Match: XP_009041098.1 (hypothetical protein AURANDRAFT_55259 [Aureococcus anophagefferens]; EGB04247.1 hypothetical protein AURANDRAFT_55259 [Aureococcus anophagefferens]) HSP 1 Score: 572.4 bits (1474), Expect = 1.300e-159 Identity = 276/433 (63.74%), Postives = 343/433 (79.21%), Query Frame = 0
Query: 47 MLHSLFILNQHGEVLIEKHWRSVTPRAVCDFFWDEVNKYPDKLDVPPLIAASKYYLVNIYREELFLVGTMLSEIPPLLVVEFLHRVLDIFSEYLGGLDDASIKDNFSTVYQLLEEMMDNGYPLTTEPNALKAMIRPPTLLSRLEAAATGKARGVSEVLPDGTVSNMPWRKSGVKYSQNEIYLDIVEEMDAIVDCSGQVVSAEVSGFIFANSRLSGIPDLSLMFVDPDVIDDCAFHPCVRYNRYERDRTVSFVPPDGQFELMRYRVTPPQALVPPIYCTAQIVYASSAGNDGTSSGRLTLTLGCRPSHCLVLSNKGKSVAFEDVVVVVPLPKAVKTTNLQANVGTVLYDEASKVVKWTIGKMSCR-ERNPQLSGSMVLAGARPEESPPIQVDWKVPMASVSGLAVLSLQLLNERYRPYKGVRTITKSGRFQVRS 479
M+ SLF+ GEVLIE+HWR VTPR VCDFFWDEVNKY +VPP++ SKYYLV++ R++++++ T+ ++ PLLV+EFLHRV+DIF EY G D+ SIKDNFS VYQLLEEM+DNG PLTTEPNALKAMI+PP+++ RL+A ATG++ VS+VLPDGT+S+MPWRKSGVKY+QN+IYLDIVEE+DAIVD +GQVVS+EV+G I ANSRLSGIPDL L FVDP+VIDDC+FHPCVRYNR+ERDR VSFVPPDG FELMRYRV + PIY T + + + GR+ + +G + + LV+ N+ S+ EDV + +P PK VKT L A +GTVLYDEA+KV KWT+GK++ R PQL+GSMV+ GA EE PPIQV WKVP+AS+SG+ + +LQL NERYRPYKGVRTITKSGRFQVR+
Sbjct: 1 MIKSLFVTGSSGEVLIERHWRGVTPRNVCDFFWDEVNKYDHSTEVPPILHTSKYYLVSVSRDDIYVIATLAKDVAPLLVIEFLHRVVDIFVEYFGAADEGSIKDNFSMVYQLLEEMLDNGNPLTTEPNALKAMIKPPSVMGRLQAVATGRS-NVSDVLPDGTISSMPWRKSGVKYAQNDIYLDIVEEVDAIVDRNGQVVSSEVTGAIMANSRLSGIPDLCLSFVDPEVIDDCSFHPCVRYNRFERDRVVSFVPPDGAFELMRYRVNTKANVSAPIYVTPSV---TMSDEHNAGHGRIQIQIGQKQTSSLVIPNRKGSLLIEDVTLSIPFPKCVKTATLSATLGTVLYDEATKVAKWTVGKLAVTGNRVPQLTGSMVIQGAL-EELPPIQVTWKVPIASISGIQIAALQLTNERYRPYKGVRTITKSGRFQVRA 428
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G00080.1 ID=NO06G00080.1|Name=NO06G00080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1563bp ATGGCTGAATGGCAGCTAATGGCGGTGGATGGTGCTGTGTGTTTCTTTGC ACCCGGCCGAGGAGCACTAAGCACACAAGTACCGCGATACAAGCGCCAAG AGGAAGAGGCCAAGGCGTTCCAACATATCGTGGCAGCTATGCTGCACTCT CTCTTCATCCTGAACCAGCACGGCGAGGTCCTCATCGAGAAGCACTGGCG AAGCGTTACCCCGCGCGCCGTCTGCGATTTCTTTTGGGACGAAGTAAATA AATATCCGGACAAGCTGGACGTTCCTCCCCTCATCGCCGCCTCCAAGTAC TACCTTGTCAACATCTACCGAGAGGAGCTCTTCCTCGTCGGCACGATGTT ATCCGAAATCCCTCCTCTCCTGGTCGTGGAGTTTCTGCACCGAGTCTTGG ACATCTTCAGTGAATATCTAGGCGGCTTGGACGACGCCTCCATCAAGGAT AATTTCTCCACTGTTTACCAACTCTTGGAGGAGATGATGGATAACGGCTA CCCCCTCACCACCGAGCCAAACGCCCTCAAGGCCATGATCCGCCCTCCCA CGCTCCTCTCCCGCCTCGAAGCCGCTGCCACTGGGAAAGCCCGCGGCGTC TCGGAGGTCCTGCCTGATGGCACCGTGTCGAACATGCCCTGGCGGAAGAG CGGAGTGAAGTACAGTCAGAACGAAATCTACCTCGATATTGTGGAGGAAA TGGATGCGATTGTCGACTGCAGTGGCCAGGTCGTCTCTGCCGAGGTATCG GGATTCATTTTCGCCAACTCCCGCCTCAGTGGCATCCCGGACTTGAGCTT GATGTTTGTCGATCCCGACGTCATCGACGACTGTGCTTTTCATCCATGCG TGCGTTACAACCGTTACGAGCGCGATCGAACCGTTTCCTTCGTCCCGCCC GACGGGCAGTTTGAGCTAATGCGGTACCGTGTGACCCCCCCCCAGGCCCT GGTGCCTCCCATCTACTGCACAGCGCAGATCGTGTACGCCTCCTCGGCAG GCAACGACGGCACAAGCAGTGGCCGCCTGACCTTGACGTTGGGCTGCCGG CCATCCCACTGCTTGGTCCTGAGCAACAAGGGAAAGAGCGTGGCGTTCGA GGACGTGGTAGTGGTCGTTCCCCTCCCCAAGGCCGTCAAAACCACGAACT TGCAGGCTAATGTAGGCACAGTCCTCTACGATGAGGCCAGTAAGGTGGTG AAATGGACAATTGGCAAGATGAGTTGTCGGGAGCGAAACCCACAACTTTC AGGCTCCATGGTCTTGGCGGGCGCACGGCCCGAGGAGTCACCGCCCATTC AAGTAGATTGGAAGGTGCCCATGGCGTCAGTCTCGGGCCTGGCCGTCCTG TCCCTGCAGCTCCTCAACGAGCGATATCGACCTTATAAAGGCGTTCGAAC CATCACCAAATCGGGTCGCTTTCAGGTCCGCTCGAGCTAGGAGACGGAGG AGAGCGTGGGATACAAAGAGCCCGGCATACCAAAACGGAAACCAACAAAG AGCGACTCATTCCACACGAAAGGGGCAGGAAGATGAAGGGATGAATCAAA AATACTGGGGTTT back to topprotein sequence of NO06G00080.1 >NO06G00080.1-protein ID=NO06G00080.1-protein|Name=NO06G00080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=480bp MAEWQLMAVDGAVCFFAPGRGALSTQVPRYKRQEEEAKAFQHIVAAMLHS LFILNQHGEVLIEKHWRSVTPRAVCDFFWDEVNKYPDKLDVPPLIAASKY YLVNIYREELFLVGTMLSEIPPLLVVEFLHRVLDIFSEYLGGLDDASIKD NFSTVYQLLEEMMDNGYPLTTEPNALKAMIRPPTLLSRLEAAATGKARGV SEVLPDGTVSNMPWRKSGVKYSQNEIYLDIVEEMDAIVDCSGQVVSAEVS GFIFANSRLSGIPDLSLMFVDPDVIDDCAFHPCVRYNRYERDRTVSFVPP DGQFELMRYRVTPPQALVPPIYCTAQIVYASSAGNDGTSSGRLTLTLGCR PSHCLVLSNKGKSVAFEDVVVVVPLPKAVKTTNLQANVGTVLYDEASKVV KWTIGKMSCRERNPQLSGSMVLAGARPEESPPIQVDWKVPMASVSGLAVL SLQLLNERYRPYKGVRTITKSGRFQVRSS* back to topmRNA from alignment at chr6:39591..44157+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G00080.1 ID=NO06G00080.1|Name=NO06G00080.1|organism=Nannochloropsis oceanica|type=mRNA|length=4567bp|location=Sequence derived from alignment at chr6:39591..44157+ (Nannochloropsis oceanica) ATGGCTGAATGGCAGCTAATGGCGGTGGATGGTGCTGTGTGTTTCTTTGC
GTGCGTGCGTAGTTATTTGGAGTGTTTGAGTATTTGAGTCTATGAACTTG
TGAGGAATGGAACCGGAAGGGATTGCAGACTTTGCAACGGCTTCATTCTT
GTTGAGGCCTTTGCACCCCTCTAAGAGGCAATTATCCCGCCTCATTCCCA
TTTTCCCGTTAATTATTTGCAGGGATACACAAAGCGTTTACCTGAAAACC
TGGTACCGGCTAGGGAAATGTGCCTGGATTGATTTCCCTTTGCAGCCGCC
TCATTCCTTTCCTATCTCTCTCTTTGCCCCCTTCCGCTATACAGACCCGG
CCGAGGAGCACTAAGCACACAAGTACCGCGATACAAGCGCCAAGAGGAAG
AGGCCAAGGCGTTCCAACATATCGTGGCAGCTATGCTGCACTCTCTCTTC
ATCCTGAACCAGCACGGGTATGTACGAAGGGATTGAAGGAGTGAGAGAAG
GAGGGAGGGGGGGGTGGGGCTTAGATGGAGGCCGTCGTAGGCTGCTTCAT
ACACTTGGTATGTGTGATAACTGTGAGGAATCATCTCCATCGACATGAAT
TTCCTCCCCTCCCTCTCCCCCTCCCTCTCTCTCCCCCGCTCTGCCATACC
CTACAGCGAGGTCCTCATCGAGAAGCACTGGCGAAGCGTTACCCCGCGCG
CCGTCTGCGATTTCTTTTGGGACGAAGTAAATAAATATCCGGACAAGCTG
GTGAGGGATGGAGGGAGGGAAAGAGGGATGGAGGGAGGGAAGGATGGGAG
GAAATGATAGCACATCGAATAAACGCAGTATGTCGACATTTCCCGCATCC
CCCCCCTCCCTCCCTCCTTTGACCCTTCCGCCTCCCTTTCTCACTTCCTA
TTGTTCTTAGGACGTTCCTCCCCTCATCGCCGCCTCCAAGTACTACCTTG
TCAACATCTACCGAGAGGAGCTCTTCCTCGTAAGCCCCTGCCCTCTCCTC
CTTGTTTCCCTCCCTTCCTTCCTCCTCCTTGTCTCGTGATTTCATCTATG
AGCTCCGTCCACTCTATACATGTCTCCCATACGGCCTTCCCTCCCTCCTC
TCATTCCACCTTTCCTCGTACTCCTCCTTCCCTCTCCACAGGTCGGCACG
ATGTTATCCGAAATCCCTCCTCTCCTGGTCGTGGAGTTTCTGCACCGAGT
CTTGGACATCTTCAGGTGCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCT
CCCTCACTCCCTCCTTCTATCCCCTTCCCCTTTCCTTCTTCCGTGGAGTC
TCCTGGTCAACCTTTTCATCGACTGACATGCGCCCTGCCTCTTTTTCCAC
TGCTTGCATCCCCCCCCCCCTTCCTTTCCTCCCTCCCTCCCTCCCTCCCC
CTAGTGAATATCTAGGCGGCTTGGACGACGCCTCCATCAAGGATAATTTC
TCCACTGTTTACCAAGTACGTCCTCTCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTTCCTTCCTCTTTTGCTCTGCTCATTTATCCACGCTT
CCCTCCCTCCCTCCCTCCTTCCCTCCCTCCAGCTCTTGGAGGAGATGATG
GATAACGGCTACCCCCTCACCACCGAGCCAAACGCCCTCAAGGTAGGGAG
GGAGGGAGCGAGGAAGGGAATTGAGGGAAAGAGAAGGGGATGTGTGATTG
TTAGATGAAATCACTAAATCCTCTCGCCCTTGTTGGGGTCCCTCCCTCCC
TCCCTCCCTCCCTCCTCAGGCCATGATCCGCCCTCCCACGCTCCTCTCCC
GCCTCGAAGCCGCTGCCACTGGGAAAGCCCGCGGCGTCTCGGAGGTCCTG
CCTGATGGCACCGTGTCGAAGTAGGGAGGGAGGGAGGGAGGGATCGAGGC
AGGGATTCTATCCTCCCCCTGGCTGGCTTGCAAACCGCACTCAAGAATAA
TGCTCCTACTCATGTCACTCGCACTCCTCCCCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCAGCATGCCCTGGCGGAAG
AGCGGAGTGAAGTACAGTCAGAACGAAATCTACCTCGATATTGTGGAGGA
AATGGATGCGATTGTCGACTGCAGTGGCCAGGTACGCCCTCCCTCCCTCC
CCCCCTCCCTCCCTCCCTCCCTTTCTCCCTCCCTCCCTACTTCTTCATTT
CCTCCCTCCCTTCCTCCCTCTCCACAGGTCGTCTCTGCCGAGGTATCGGG
ATTCATTTTCGCCAACTCCCGCCTCAGTGGTACGCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCTCCACGTTGTCTCAAGCCGAGTGCCCTCT
CCTATATTTCTTCCCTTCTTCCCTCCTTCCCTTCCTCCCTCCCTTCCTCC
CTCCCTTCCTCCCTCCAGGCATCCCGGACTTGAGCTTGATGTTTGTCGAT
CCCGACGTCATCGACGACTGTGCTTTTCATCCATGTGAGGAAGGGAGGCA
GGGAGGGAGGCAGGGAGGGAAGGGGGGGGGGTAATAAAAGAGAGCAGGAT
TTTGATTTCATTCTTGGAAGGAAGGAAGGAGGGAAGGAGGGAGAGAGGGA
GGGAAGGAGGGAGATAAGGAGGGCTGACGCATGTAACATCCAATCCTGTT
CTCAACATTTCTCCCCTCCGTCCATCCCTCCCCCCTTCCTTTCTTCTCTC
CCTCAGGCGTGCGTTACAACCGTTACGAGCGCGATCGAACCGTTTCCTTC
GTCCCGCCCGACGGGCAGTTTGAGGTACTGCATCAATCGGGAGGGGAGGG
AGTGAAAGAAGGGATATCGAAGTCAGGACAACATGCATGTGTGTGGAAGC
ATCTACTCTACTCACCACTTTCCCCTCATTTCCTCCCTCTCTTCCTAGCT
AATGCGGTACCGTGTGACCCCCCCCCAGGCCCTGGTGCCTCCCATCTACT
GCACAGCGCAGGTAGGGAGGGAGGGAGGAAGGGACGGAGGGAGGGAGAGT
GAGCCCCTCCTGAGGGCACGTCACATGTCCACTCGCCGCCGACCTTCCCT
CCCTCCCTCCCTCCCTCCATCCATCCATTCAGATCGTGTACGCCTCCTCG
GCAGGCAACGACGGCACAAGCAGTGGCCGCCTGACCTTGACGTTGGGCTG
CCGGCCATCCCACTGCTTGGTCCTGAGCAACAAGGGAAAGAGGTGGATAG
GGAGGAAGGGAGGAAAGGAGGGGAAGGGGGAAGGGGGGACTGAAGAAAAA
GTTTGAAATGCTCGCTCACTGCTCGCAATTGCCTGGCCCCGCTGTATCCG
AACGATCCTCCCCTCCCTCCCTCTCTCCCTCCCTCCATCCCTCCATCCTT
CCCTCCCTCAGCGTGGCGTTCGAGGACGTGGTAGTGGTCGTTCCCCTCCC
CAAGGCCGTCAAAACCACGAACTTGCAGGCTAATGTAGGCACAGTCCTCT
ACGATGAGGCCAGTAAGGTAGGGAGGGAGGGAGGGAGGGACGGAGGGACG
GAGAAGAGGAGAGAGCAATGGAGAGAGCTGGACGAACTGAAGGAAGCTCA
TTAGAAACCGATTTCCTCAACAACGAAAATCATTACATGTGAATAATCAA
ATTCCCACCTTCACAAATCACGATAGAATATAAAGGGAATGATGACTTTA
TCATAATATGAATGATTAGAACTGAATCATAATACAAATTACAATTCCAC
CAGGTGGTGAAATGGACAATTGGCAAGATGAGTTGTCGGGAGCGAAACCC
ACAACTTTCAGGTGTGTACAGAGGGGGAGGATGGGAGGGGGAAGGGTCAA
GAGGGAGGGCATGGAAATGACCGTTTTCGTTGCTGATACGTTGATTTACC
ATTTGGGTGTCACCATACGTGCATGCATCCCCCTCCCCCCCTCCCTCCAC
TCCCACCCTCCGCAGGCTCCATGGTCTTGGCGGGCGCACGGCCCGAGGAG
TCACCGCCCATTCAAGTAGATTGGAAGGTAGGCTGCTTGAGACGTTTCCT
GCCCTCCCTCCTTCGCTCCTTCCCTCCCTCCCTCCCTCCTTTTTCCGGTG
CCCCACCTGCTGTGACTTTTCTTCCTACTTGTACTAAACCCTCCCTCCTT
CCCTCTCTCCCTCCCGTCCGCCCTCCCTTCTTGGCCAGGTGCCCATGGCG
TCAGTCTCGGGCCTGGCCGTCCTGTCCCTGCAGCTCCTCAACGAGCGATA
TCGACCTTATAAAGGTGGGCCGGGTGGATAGCCACGGGAGAGGGAGGAAA
GGAGGGAGGGAGGGAGCGAGGGAGGGAGGGAGCGAGGGAGGGAGAGAGAG
AGAGAGGGAGAATGTACACACAACTATAACCCGTACATACGTTCAACCCT
GCCCCTGCTCTATCGTCTCTTCCCACACGCTCCTCCGAATGCAGGCGTTC
GAACCATCACCAAATCGGGTCGCTTTCAGGTCCGCTCGAGCTAGGAGACG
GAGGAGAGCGTGGGATACAAAGAGCCCGGCATACCAAAACGGAAACCAAC
AAAGAGCGACTCATTCCACACGAAAGGGGCAGGAAGATGAAGGGATGAAT
CAAAAATACTGGGGTTT back to topCoding sequence (CDS) from alignment at chr6:39591..44157+ >NO06G00080.1 ID=NO06G00080.1|Name=NO06G00080.1|organism=Nannochloropsis oceanica|type=CDS|length=1440bp|location=Sequence derived from alignment at chr6:39591..44157+ (Nannochloropsis oceanica) ATGGCTGAATGGCAGCTAATGGCGGTGGATGGTGCTGTGTGTTTCTTTGC ACCCGGCCGAGGAGCACTAAGCACACAAGTACCGCGATACAAGCGCCAAG AGGAAGAGGCCAAGGCGTTCCAACATATCGTGGCAGCTATGCTGCACTCT CTCTTCATCCTGAACCAGCACGGCGAGGTCCTCATCGAGAAGCACTGGCG AAGCGTTACCCCGCGCGCCGTCTGCGATTTCTTTTGGGACGAAGTAAATA AATATCCGGACAAGCTGGACGTTCCTCCCCTCATCGCCGCCTCCAAGTAC TACCTTGTCAACATCTACCGAGAGGAGCTCTTCCTCGTCGGCACGATGTT ATCCGAAATCCCTCCTCTCCTGGTCGTGGAGTTTCTGCACCGAGTCTTGG ACATCTTCAGTGAATATCTAGGCGGCTTGGACGACGCCTCCATCAAGGAT AATTTCTCCACTGTTTACCAACTCTTGGAGGAGATGATGGATAACGGCTA CCCCCTCACCACCGAGCCAAACGCCCTCAAGGCCATGATCCGCCCTCCCA CGCTCCTCTCCCGCCTCGAAGCCGCTGCCACTGGGAAAGCCCGCGGCGTC TCGGAGGTCCTGCCTGATGGCACCGTGTCGAACATGCCCTGGCGGAAGAG CGGAGTGAAGTACAGTCAGAACGAAATCTACCTCGATATTGTGGAGGAAA TGGATGCGATTGTCGACTGCAGTGGCCAGGTCGTCTCTGCCGAGGTATCG GGATTCATTTTCGCCAACTCCCGCCTCAGTGGCATCCCGGACTTGAGCTT GATGTTTGTCGATCCCGACGTCATCGACGACTGTGCTTTTCATCCATGCG TGCGTTACAACCGTTACGAGCGCGATCGAACCGTTTCCTTCGTCCCGCCC GACGGGCAGTTTGAGCTAATGCGGTACCGTGTGACCCCCCCCCAGGCCCT GGTGCCTCCCATCTACTGCACAGCGCAGATCGTGTACGCCTCCTCGGCAG GCAACGACGGCACAAGCAGTGGCCGCCTGACCTTGACGTTGGGCTGCCGG CCATCCCACTGCTTGGTCCTGAGCAACAAGGGAAAGAGCGTGGCGTTCGA GGACGTGGTAGTGGTCGTTCCCCTCCCCAAGGCCGTCAAAACCACGAACT TGCAGGCTAATGTAGGCACAGTCCTCTACGATGAGGCCAGTAAGGTGGTG AAATGGACAATTGGCAAGATGAGTTGTCGGGAGCGAAACCCACAACTTTC AGGCTCCATGGTCTTGGCGGGCGCACGGCCCGAGGAGTCACCGCCCATTC AAGTAGATTGGAAGGTGCCCATGGCGTCAGTCTCGGGCCTGGCCGTCCTG TCCCTGCAGCTCCTCAACGAGCGATATCGACCTTATAAAGGCGTTCGAAC CATCACCAAATCGGGTCGCTTTCAGGTCCGCTCGAGCTAG back to top
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