NO05G05300, NO05G05300 (gene) Nannochloropsis oceanica

Overview
NameNO05G05300
Unique NameNO05G05300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length740
Alignment locationchr5:1409128..1409867 -

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Properties
Property NameValue
DescriptionPeptide methionine sulfoxide reductase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1409128..1409867 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008113peptide-methionine (S)-S-oxide reductase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036509Met_Sox_Rdtase_MsrA_sf
IPR002569Met_Sox_Rdtase_MsrA
Homology
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BLAST of NO05G05300 vs. NCBI_GenBank
Match: XP_005855498.1 (peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526] >XP_005856143.1 peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526] >EKU20211.1 peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526] >EKU20856.1 peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526] >EWM27874.1 peptide methionine sulfoxide reductase [Nannochloropsis gaditana])

HSP 1 Score: 359.4 bits (921), Expect = 7.400e-96
Identity = 166/200 (83.00%), Postives = 182/200 (91.00%), Query Frame = 0 
Query:    1 MRHSWYTQLTGLALEASEAAMASVVPAISSEGHAIATFAGGCFWGIELRFARVPGVVTTGTGYTQGHVKEPSYQEVCSGMTGHTEAVQVFYNPMEVSYDELLKVFWERIDPLMENGQGGDRGTQYRTGIYCHTPAQLQAAQRSRDIEQKKYSRPIMTEIKPATIFWPAEMSHQGYLWKGGRFGSAQSAEKGCTDPIRCYG 201
            MRH+WY QL+GLALEAS+AA+A  VPA+S +GH+IATFAGGCFWGIEL F RVPGVV TGTGYTQGHV EPSYQEVCSG TGHTEA+QV + P EVSY++LLKVFWERIDPLMENGQGGDRGTQYRTGIY HT AQ +AA +SR+IEQKKYSRPIMTEIKPA +FWPAE+SHQGYLWKGGRFGSAQSA KGCTDPIRCYG
Sbjct:    1 MRHAWYQQLSGLALEASKAALADSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
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BLAST of NO05G05300 vs. NCBI_GenBank
Match: CBJ30839.1 (methionine sulfoxide reductase [Ectocarpus siliculosus])

HSP 1 Score: 245.4 bits (625), Expect = 1.500e-61
Identity = 119/194 (61.34%), Postives = 142/194 (73.20%), Query Frame = 0 
Query:    6 YTQLTGLALEASEAAMASVVPAISSEGHAIATFAGGCFWGIELRFARVPGVVTTGTGYTQGHVKEPSYQEVCSGMTGHTEAVQVFYNPMEVSYDELLKVFWERIDPLMENGQGGDRGTQYRTGIYCHTPAQLQAAQRSRDIEQKKYSRPIMTEIKPATIFWPAEMSHQGYLWKGGRFGSAQSAEKGCTDPIRCY 200
            Y +L G A EA+ AA+   VP+ S  GH IATFAGGCFWG+EL F RVPGVV T  GYTQG V++P+Y EVCSG TGHTEAVQV+YNP EVS++EL  VF+ RI+P   NGQGGDRGTQYRTG+Y HT  Q   A +  D  +  Y +PI TEI+ A ++WPAE+ HQ YL KGG  G AQ+AEKG T+ IRCY
Sbjct:   91 YEELEGGAEEAARAALKGEVPSKSEAGHDIATFAGGCFWGLELAFQRVPGVVATSVGYTQGAVEKPTYGEVCSGSTGHTEAVQVYYNPSEVSFEELCGVFFGRINPTQVNGQGGDRGTQYRTGVYPHTKGQSDVALKVVDGLRGNYKQPIATEIEGAKVYWPAELYHQQYLPKGGPNGMAQNAEKGATETIRCY 284
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BLAST of NO05G05300 vs. NCBI_GenBank
Match: EWM22611.1 (peptide methionine sulfoxide reductase [Nannochloropsis gaditana])

HSP 1 Score: 236.9 bits (603), Expect = 5.500e-59
Identity = 113/196 (57.65%), Postives = 144/196 (73.47%), Query Frame = 0 
Query:    6 YTQLTGL-ALEASEAAMASVVPAISSEGHAIATFAGGCFWGIELRFARVPGVVTTGTGYTQGHVKEPSYQEVCSGMTGHTEAVQVFYNPMEVSYDELLKVFWERIDPLMENGQGGDRGTQYRTGIYCHTPAQLQAAQRSRDIEQKKYSRPIMTEIKPATIFWPAEMSHQGYLWKGGRFGSAQSAEKGCTDPIRCYG 201
            Y+ LTG+ A EA+E A+  VV   S +G+ IATFAGGCFWG+EL + RV GV+ T  GYTQG  ++P+Y  VCSGM+GHTEAVQVF++P EVSY+ L K+   RI+P ++N  G DRGTQYR GIY H   Q + A++  +  Q ++S+PI+TE  PAT++WPAE  HQ YL KGGRF + QSA KGCTDPIRCYG
Sbjct:   81 YSTLTGMEAKEAAELALKGVVQDKSKDGYEIATFAGGCFWGLELAYQRVVGVIDTSVGYTQGKDEKPTYDYVCSGMSGHTEAVQVFFDPKEVSYEYLCKLLLTRINPTLKNQVGNDRGTQYRHGIYYHNEGQEKVAKKVLEEAQAQFSKPIVTECLPATVYWPAEEYHQKYLEKGGRFSAGQSAAKGCTDPIRCYG 276
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BLAST of NO05G05300 vs. NCBI_GenBank
Match: XP_002180919.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC47571.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 224.6 bits (571), Expect = 2.800e-55
Identity = 102/166 (61.45%), Postives = 119/166 (71.69%), Query Frame = 0 
Query:   35 IATFAGGCFWGIELRFARVPGVVTTGTGYTQGHVKEPSYQEVCSGMTGHTEAVQVFYNPMEVSYDELLKVFWERIDPLMENGQGGDRGTQYRTGIYCHTPAQLQAAQRSRDIEQKKYSRPIMTEIKPATIFWPAEMSHQGYLWKGGRFGSAQSAEKGCTDPIRCYG 201
            +ATFAGGCFWG+EL + RVPGV  T  GY QG    P+Y +VC+G TGHTEAV V+YNP E  Y++LL  F+ER+DP   NGQGGDRG QYRTG+Y HTP Q Q AQ     EQ KY+RP+ +E+K A  FWPAE  HQ YL KGGRF   Q+A KG TD IRCYG
Sbjct:    5 LATFAGGCFWGLELAYQRVPGVEYTAVGYAQGPETNPTYNQVCAGSTGHTEAVMVYYNPDECRYEDLLDTFFERVDPTTVNGQGGDRGKQYRTGVYFHTPEQEQVAQARFAAEQPKYNRPMASELKAAAPFWPAEKYHQQYLEKGGRFNQPQNANKGATDTIRCYG 170
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BLAST of NO05G05300 vs. NCBI_GenBank
Match: PRW50853.1 (peptide methionine sulfoxide reductase [Chlorella sorokiniana])

HSP 1 Score: 224.2 bits (570), Expect = 3.700e-55
Identity = 103/165 (62.42%), Postives = 119/165 (72.12%), Query Frame = 0 
Query:   36 ATFAGGCFWGIELRFARVPGVVTTGTGYTQGHVKEPSYQEVCSGMTGHTEAVQVFYNPMEVSYDELLKVFWERIDPLMENGQGGDRGTQYRTGIYCHTPAQLQAAQRSRDIEQKKYSRPIMTEIKPATIFWPAEMSHQGYLWKGGRFGSAQSAEKGCTDPIRCYG 201
            ATF  GCFWG EL F RVPGVV T  GY+QGH K PSYQ+VCSG TGH E VQV ++P EVSY++LL VFW R DP   N QGGD GTQYR+GIYCHTP Q  AA+ S+  + +K    ++TEI+    F+ AE  HQ YL +GGRFG  QSAEKGC DPIRCYG
Sbjct:  218 ATFGAGCFWGPELAFQRVPGVVQTAVGYSQGHAKNPSYQDVCSGTTGHAEVVQVVFDPSEVSYEQLLDVFWARHDPTTLNRQGGDVGTQYRSGIYCHTPEQKAAAEASKAAQNEKLGGQVVTEIEEINNFYVAEEFHQKYLERGGRFGQGQSAEKGCNDPIRCYG 382
[Close]
BLAST of NO05G05300 vs. NCBI_GenBank
Match: CAH25352.1 (putative methionine sulfoxide reductase, partial [Guillardia theta])

HSP 1 Score: 220.3 bits (560), Expect = 5.300e-54
Identity = 104/189 (55.03%), Postives = 134/189 (70.90%), Query Frame = 0 
Query:   13 ALEASEAAMASVVPAISSEGHAIATFAGGCFWGIELRFARVPGVVTTGTGYTQGHVKEPSYQEVCSGMTGHTEAVQVFYNPMEVSYDELLKVFWERIDPLMENGQGGDRGTQYRTGIYCHTPAQ-LQAAQRSRDIEQKKYSRPIMTEIKPATIFWPAEMSHQGYLWKGGRFGSAQSAEKGCTDPIRCYG 201
            A EA+E A    V ++S  GH+IATF GGCFWGIEL + RVPGVV T  GY QG ++ PSY+ VC+G TGHTE VQ+ YNP EVS+ +L +V + +I+P +++  G DRG+QYR GIY HTP Q  +A +  ++++ K    P  TE++ A +F+PAE  HQ YL KGGRFGS QSA KGC DPIRCYG
Sbjct:   32 AAEAAEYAKEGQVKSVSKAGHSIATFGGGCFWGIELVYQRVPGVVATAVGYAQGELEHPSYEMVCTGATGHTEVVQLTYNPKEVSFKQLCQVLFGKINPSLKDQVGNDRGSQYRHGIYFHTPEQKAEAEEAIQEVKAKLNGAPFYTELEAAKVFYPAEEYHQQYLEKGGRFGSKQSAAKGCNDPIRCYG 220
[Close]
BLAST of NO05G05300 vs. NCBI_GenBank
Match: XP_005840946.1 (hypothetical protein GUITHDRAFT_100216 [Guillardia theta CCMP2712] >EKX53966.1 hypothetical protein GUITHDRAFT_100216 [Guillardia theta CCMP2712])

HSP 1 Score: 220.3 bits (560), Expect = 5.300e-54
Identity = 104/189 (55.03%), Postives = 134/189 (70.90%), Query Frame = 0 
Query:   13 ALEASEAAMASVVPAISSEGHAIATFAGGCFWGIELRFARVPGVVTTGTGYTQGHVKEPSYQEVCSGMTGHTEAVQVFYNPMEVSYDELLKVFWERIDPLMENGQGGDRGTQYRTGIYCHTPAQ-LQAAQRSRDIEQKKYSRPIMTEIKPATIFWPAEMSHQGYLWKGGRFGSAQSAEKGCTDPIRCYG 201
            A EA+E A    V ++S  GH+IATF GGCFWGIEL + RVPGVV T  GY QG ++ PSY+ VC+G TGHTE VQ+ YNP EVS+ +L +V + +I+P +++  G DRG+QYR GIY HTP Q  +A +  ++++ K    P  TE++ A +F+PAE  HQ YL KGGRFGS QSA KGC DPIRCYG
Sbjct:   25 AAEAAEYAKEGQVKSVSKAGHSIATFGGGCFWGIELVYQRVPGVVATAVGYAQGELEHPSYEMVCTGATGHTEVVQLTYNPKEVSFKQLCQVLFGKINPSLKDQVGNDRGSQYRHGIYFHTPEQKAEAEEAIQEVKAKLNGAPFYTELEAAKVFYPAEEYHQQYLEKGGRFGSKQSAAKGCNDPIRCYG 213
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BLAST of NO05G05300 vs. NCBI_GenBank
Match: XP_019238959.1 (PREDICTED: peptide methionine sulfoxide reductase A1-like [Nicotiana attenuata] >OIT21365.1 peptide methionine sulfoxide reductase [Nicotiana attenuata])

HSP 1 Score: 217.6 bits (553), Expect = 3.500e-53
Identity = 111/203 (54.68%), Postives = 132/203 (65.02%), Query Frame = 0 
Query:    4 SWYTQL-TGLALEASEAAMASVVPA-----ISSEGHAIATFAGGCFWGIELRFARVPGVVTTGTGYTQGHVKEPSYQEVCSGMTGHTEAVQVFYNPMEVSYDELLKVFWERIDPLMENGQGGDRGTQYRTGIYCHTPAQLQAAQRSRDIEQKKYSRPIMTEIKPATIFWPAEMSHQGYLWKGGRFGSAQSAEKGCTDPIRCYG 201
            SW  +L  G   + S A  +S +P      I S G   A F  GCFWG+EL + RV GV  T  GY+QG++  P Y++VCSG T H+E V+V Y+P E SYD LL VFW R DP   N QG D GTQYR+GIY +TP Q +AA  SRD +QK  +R I+TEI PA  F+ AE  HQ YL KGGRFGS QSAEKGC DPIRCYG
Sbjct:   51 SWLNKLGFGFRTDQSPAMDSSAIPQGPDDDIPSPGQQFAQFGAGCFWGVELAYQRVAGVTKTEVGYSQGYLHNPRYEDVCSGTTNHSEVVRVQYDPKECSYDSLLDVFWSRHDPTTPNRQGNDVGTQYRSGIYFYTPEQEKAALESRDRQQKLLNRNIVTEILPAKKFYRAEEYHQQYLAKGGRFGSKQSAEKGCNDPIRCYG 253
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BLAST of NO05G05300 vs. NCBI_GenBank
Match: XP_019184426.1 (PREDICTED: peptide methionine sulfoxide reductase A1-like [Ipomoea nil])

HSP 1 Score: 217.6 bits (553), Expect = 3.500e-53
Identity = 109/204 (53.43%), Postives = 133/204 (65.20%), Query Frame = 0 
Query:    2 RHSWYTQLTGLALEASEAAMASVVPA-----ISSEGHAIATFAGGCFWGIELRFARVPGVVTTGTGYTQGHVKEPSYQEVCSGMTGHTEAVQVFYNPMEVSYDELLKVFWERIDPLMENGQGGDRGTQYRTGIYCHTPAQLQAAQRSRDIEQKKYSRPIMTEIKPATIFWPAEMSHQGYLWKGGRFGSAQSAEKGCTDPIRCYG 201
            R SW  +L   A  A+E++M S +         + G   A F  GCFWG+EL F RVPGV  T  GYTQGHV  PSY++VC+G T H+E V+V Y+P E S++ LL  FW R DP   N QG D GTQYR+GIY +TP Q + A  S++ +QK  +R I+TEI PA  F+ AE  HQ YL KGGRFGS QSAEKGC DPIRCYG
Sbjct:   51 RMSWLNKLGFGARSAAESSMDSAIAQGPDDDAPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYTQGHVHNPSYEDVCTGTTNHSEVVRVQYDPKECSFESLLDAFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKEAIESKEKQQKLLNRQIVTEILPAKKFYRAEEYHQQYLAKGGRFGSKQSAEKGCNDPIRCYG 254
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BLAST of NO05G05300 vs. NCBI_GenBank
Match: XP_004307774.2 (PREDICTED: peptide methionine sulfoxide reductase A1-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 215.3 bits (547), Expect = 1.700e-52
Identity = 101/173 (58.38%), Postives = 122/173 (70.52%), Query Frame = 0 
Query:   28 ISSEGHAIATFAGGCFWGIELRFARVPGVVTTGTGYTQGHVKEPSYQEVCSGMTGHTEAVQVFYNPMEVSYDELLKVFWERIDPLMENGQGGDRGTQYRTGIYCHTPAQLQAAQRSRDIEQKKYSRPIMTEIKPATIFWPAEMSHQGYLWKGGRFGSAQSAEKGCTDPIRCYG 201
            + + G   A F  GCFWG+EL F RVPGV  T  GY+QG +  PSY++VCSG TGH+E V+V Y+P + S++ LL +FW R DP   N QGGD GTQYR+GIY +TP Q QAA+ S +  QK  +RPI+TEI PA  F+ AE  HQ YL KGGRFG  QSAEKGC DPIRCYG
Sbjct:  128 VPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGLLHNPSYEDVCSGTTGHSEVVRVQYDPKDCSFEALLDMFWSRHDPTTLNRQGGDVGTQYRSGIYFYTPEQEQAAKESMEKHQKVVNRPIVTEILPAKKFYRAEEYHQQYLAKGGRFGFRQSAEKGCNDPIRCYG 300
The following BLAST results are available for this feature:
BLAST of NO05G05300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855498.17.400e-9683.00peptide methionine sulfoxide reductase [Nannochlor... [more]
CBJ30839.11.500e-6161.34methionine sulfoxide reductase [Ectocarpus silicul... [more]
EWM22611.15.500e-5957.65peptide methionine sulfoxide reductase [Nannochlor... [more]
XP_002180919.12.800e-5561.45predicted protein, partial [Phaeodactylum tricornu... [more]
PRW50853.13.700e-5562.42peptide methionine sulfoxide reductase [Chlorella ... [more]
CAH25352.15.300e-5455.03putative methionine sulfoxide reductase, partial [... [more]
XP_005840946.15.300e-5455.03hypothetical protein GUITHDRAFT_100216 [Guillardia... [more]
XP_019238959.13.500e-5354.68PREDICTED: peptide methionine sulfoxide reductase ... [more]
XP_019184426.13.500e-5353.43PREDICTED: peptide methionine sulfoxide reductase ... [more]
XP_004307774.21.700e-5258.38PREDICTED: peptide methionine sulfoxide reductase ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR078ncniR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003312NSK003312Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G05300.1NO05G05300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611376gene_10574Nannochloropsis oceanica (N. oceanica CCMP1779)gene
MSRAgene2694Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G05300.1NO05G05300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G05300 ID=NO05G05300|Name=NO05G05300|organism=Nannochloropsis oceanica|type=gene|length=740bp
ATGAGGCACTCGTGGTACACGCAACTGACCGGCCTTGCGCTTGAAGCCAG
TGAGGCTGCCATGGCCAGCGTCGTACCTGCAATCTCGTCTGAAGGCCATG
CGATTGCCACCTTCGCCGGCGGATGCTTTTGGGGGATTGAATTGCGATTC
GCACGGGTGCCGGGGGTGGTGACCACGGGAACTGGGTATACACAGGGGCA
CGTGAAGGAGCCGTCATACCAGGAGGTGTGCAGTGGAATGACAGGGCATA
CGGAGGCGGTTCAAGTGTTTTATAATCCGATGGAGGTATCGTACGATGAG
TTGTTGAAGGTCTTCTGGGAGCGTATTGACCCCTTGATGGAGAATGGTCA
AGGGGGCGATCGAGgtgaggagggagagaggggtgctggatgatatagcg
atggaagcgttgacccttccggtttgccagaaaaaactcgttatacagac
ctgaactcatttccccccttttcgtctcccctttccactcccttcgtcaa
gGCACGCAATACCGCACCGGCATCTATTGCCACACCCCCGCCCAGCTCCA
AGCCGCGCAACGGAGCCGGGATATTGAACAGAAGAAATATTCGCGGCCCA
TCATGACCGAAATCAAGCCCGCCACGATCTTTTGGCCGGCGGAGATGTCT
CACCAGGGGTACCTGTGGAAGGGGGGGAGGTTTGGCTCGGCCCAGAGCGC
GGAAAAAGGATGCACGGACCCCATTCGGTGCTATGGATAG
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protein sequence of NO05G05300.1

>NO05G05300.1-protein ID=NO05G05300.1-protein|Name=NO05G05300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MRHSWYTQLTGLALEASEAAMASVVPAISSEGHAIATFAGGCFWGIELRF
ARVPGVVTTGTGYTQGHVKEPSYQEVCSGMTGHTEAVQVFYNPMEVSYDE
LLKVFWERIDPLMENGQGGDRGTQYRTGIYCHTPAQLQAAQRSRDIEQKK
YSRPIMTEIKPATIFWPAEMSHQGYLWKGGRFGSAQSAEKGCTDPIRCYG
*
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Synonyms
Publications