NO05G05300.1, NO05G05300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G05300.1
Unique NameNO05G05300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length603
Alignment locationchr5:1409128..1409867 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1409128..1409867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G05300.1 vs.
Match: XP_005855498.1 (peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526]; XP_005856143.1 peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526]; EKU20211.1 peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526]; EKU20856.1 peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526]; EWM27874.1 peptide methionine sulfoxide reductase [Nannochloropsis gaditana])

HSP 1 Score: 359.4 bits (921), Expect = 7.400e-96
Identity = 166/200 (83.00%), Postives = 182/200 (91.00%), Query Frame = 0 
Query:    1 MRHSWYTQLTGLALEASEAAMASVVPAISSEGHAIATFAGGCFWGIELRFARVPGVVTTGTGYTQGHVKEPSYQEVCSGMTGHTEAVQVFYNPMEVSYDELLKVFWERIDPLMENGQGGDRGTQYRTGIYCHTPAQLQAAQRSRDIEQKKYSRPIMTEIKPATIFWPAEMSHQGYLWKGGRFGSAQSAEKGCTDPIRCYG 201
            MRH+WY QL+GLALEAS+AA+A  VPA+S +GH+IATFAGGCFWGIEL F RVPGVV TGTGYTQGHV EPSYQEVCSG TGHTEA+QV + P EVSY++LLKVFWERIDPLMENGQGGDRGTQYRTGIY HT AQ +AA +SR+IEQKKYSRPIMTEIKPA +FWPAE+SHQGYLWKGGRFGSAQSA KGCTDPIRCYG
Sbjct:    1 MRHAWYQQLSGLALEASKAALADSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
The following BLAST results are available for this feature:
BLAST of NO05G05300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855498.17.400e-9683.00peptide methionine sulfoxide reductase [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G05300NO05G05300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G05300.1NO05G05300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G05300.1.cds1NO05G05300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G05300.1.cds2NO05G05300.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G05300.1 ID=NO05G05300.1|Name=NO05G05300.1|organism=Nannochloropsis oceanica|type=mRNA|length=603bp
ATGAGGCACTCGTGGTACACGCAACTGACCGGCCTTGCGCTTGAAGCCAG
TGAGGCTGCCATGGCCAGCGTCGTACCTGCAATCTCGTCTGAAGGCCATG
CGATTGCCACCTTCGCCGGCGGATGCTTTTGGGGGATTGAATTGCGATTC
GCACGGGTGCCGGGGGTGGTGACCACGGGAACTGGGTATACACAGGGGCA
CGTGAAGGAGCCGTCATACCAGGAGGTGTGCAGTGGAATGACAGGGCATA
CGGAGGCGGTTCAAGTGTTTTATAATCCGATGGAGGTATCGTACGATGAG
TTGTTGAAGGTCTTCTGGGAGCGTATTGACCCCTTGATGGAGAATGGTCA
AGGGGGCGATCGAGGCACGCAATACCGCACCGGCATCTATTGCCACACCC
CCGCCCAGCTCCAAGCCGCGCAACGGAGCCGGGATATTGAACAGAAGAAA
TATTCGCGGCCCATCATGACCGAAATCAAGCCCGCCACGATCTTTTGGCC
GGCGGAGATGTCTCACCAGGGGTACCTGTGGAAGGGGGGGAGGTTTGGCT
CGGCCCAGAGCGCGGAAAAAGGATGCACGGACCCCATTCGGTGCTATGGA
TAG
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protein sequence of NO05G05300.1

>NO05G05300.1-protein ID=NO05G05300.1-protein|Name=NO05G05300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MRHSWYTQLTGLALEASEAAMASVVPAISSEGHAIATFAGGCFWGIELRF
ARVPGVVTTGTGYTQGHVKEPSYQEVCSGMTGHTEAVQVFYNPMEVSYDE
LLKVFWERIDPLMENGQGGDRGTQYRTGIYCHTPAQLQAAQRSRDIEQKK
YSRPIMTEIKPATIFWPAEMSHQGYLWKGGRFGSAQSAEKGCTDPIRCYG
*
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mRNA from alignment at chr5:1409128..1409867-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G05300.1 ID=NO05G05300.1|Name=NO05G05300.1|organism=Nannochloropsis oceanica|type=mRNA|length=740bp|location=Sequence derived from alignment at chr5:1409128..1409867- (Nannochloropsis oceanica)
ATGAGGCACTCGTGGTACACGCAACTGACCGGCCTTGCGCTTGAAGCCAG
TGAGGCTGCCATGGCCAGCGTCGTACCTGCAATCTCGTCTGAAGGCCATG
CGATTGCCACCTTCGCCGGCGGATGCTTTTGGGGGATTGAATTGCGATTC
GCACGGGTGCCGGGGGTGGTGACCACGGGAACTGGGTATACACAGGGGCA
CGTGAAGGAGCCGTCATACCAGGAGGTGTGCAGTGGAATGACAGGGCATA
CGGAGGCGGTTCAAGTGTTTTATAATCCGATGGAGGTATCGTACGATGAG
TTGTTGAAGGTCTTCTGGGAGCGTATTGACCCCTTGATGGAGAATGGTCA
AGGGGGCGATCGAGGTGAGGAGGGAGAGAGGGGTGCTGGATGATATAGCG
ATGGAAGCGTTGACCCTTCCGGTTTGCCAGAAAAAACTCGTTATACAGAC
CTGAACTCATTTCCCCCCTTTTCGTCTCCCCTTTCCACTCCCTTCGTCAA
GGCACGCAATACCGCACCGGCATCTATTGCCACACCCCCGCCCAGCTCCA
AGCCGCGCAACGGAGCCGGGATATTGAACAGAAGAAATATTCGCGGCCCA
TCATGACCGAAATCAAGCCCGCCACGATCTTTTGGCCGGCGGAGATGTCT
CACCAGGGGTACCTGTGGAAGGGGGGGAGGTTTGGCTCGGCCCAGAGCGC
GGAAAAAGGATGCACGGACCCCATTCGGTGCTATGGATAG
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Coding sequence (CDS) from alignment at chr5:1409128..1409867-

>NO05G05300.1 ID=NO05G05300.1|Name=NO05G05300.1|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at chr5:1409128..1409867- (Nannochloropsis oceanica)
ATGAGGCACTCGTGGTACACGCAACTGACCGGCCTTGCGCTTGAAGCCAG
TGAGGCTGCCATGGCCAGCGTCGTACCTGCAATCTCGTCTGAAGGCCATG
CGATTGCCACCTTCGCCGGCGGATGCTTTTGGGGGATTGAATTGCGATTC
GCACGGGTGCCGGGGGTGGTGACCACGGGAACTGGGTATACACAGGGGCA
CGTGAAGGAGCCGTCATACCAGGAGGTGTGCAGTGGAATGACAGGGCATA
CGGAGGCGGTTCAAGTGTTTTATAATCCGATGGAGGTATCGTACGATGAG
TTGTTGAAGGTCTTCTGGGAGCGTATTGACCCCTTGATGGAGAATGGTCA
AGGGGGCGATCGAGGCACGCAATACCGCACCGGCATCTATTGCCACACCC
CCGCCCAGCTCCAAGCCGCGCAACGGAGCCGGGATATTGAACAGAAGAAA
TATTCGCGGCCCATCATGACCGAAATCAAGCCCGCCACGATCTTTTGGCC
GGCGGAGATGTCTCACCAGGGGTACCTGTGGAAGGGGGGGAGGTTTGGCT
CGGCCCAGAGCGCGGAAAAAGGATGCACGGACCCCATTCGGTGCTATGGA
TAG
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Synonyms
Publications