NO05G05180, NO05G05180 (gene) Nannochloropsis oceanica

Overview
NameNO05G05180
Unique NameNO05G05180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length489
Alignment locationchr5:1359678..1360166 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1359678..1360166 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO05G05180 vs. NCBI_GenBank
Match: EWM27881.1 (hypothetical protein Naga_100323g2 [Nannochloropsis gaditana])

HSP 1 Score: 177.9 bits (450), Expect = 2.500e-41
Identity = 114/162 (70.37%), Postives = 125/162 (77.16%), Query Frame = 0 
Query:    1 MLGHSNGGAMTQILGCDHAELFAALASVTPGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIENWTLNDGCAKKPTFEKTRDYDCDLSKPVDDNKGYDQWRDHNCMLSGNETEMSGWTCEGGSEVEFWWMRGAMHDPAFSSQWSDDVVAWLMSKTYVEA 163
            MLGHSNGGAMTQIL C+               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV+ NWT  D C   P  E +RDYDCD S+P DDN+GYDQWRDHNC L G ETE++GW C+GGS+VEFWWMRGA H+PA S QWSDDVVAWL+SK YV A
Sbjct:  280 MLGHSNGGAMTQILACEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVGNWTTVDRCPAAPHLETSRDYDCDPSRPFDDNEGYDQWRDHNCKLEGRETEVTGWVCKGGSQVEFWWMRGAAHNPALSPQWSDDVVAWLLSKDYVAA 441
The following BLAST results are available for this feature:
BLAST of NO05G05180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27881.12.500e-4170.37hypothetical protein Naga_100323g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR078ncniR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003325NSK003325Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G05180.1NO05G05180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634112gene_10588Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G05180.1NO05G05180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G05180 ID=NO05G05180|Name=NO05G05180|organism=Nannochloropsis oceanica|type=gene|length=489bp
ATGCTAGGGCATTCGAACGGAGGGGCGATGACTCAAATCCTGGGTTGTGA
CCACGCTGAGCTCTTTGCGGCCTTGGCCAGCGTGACGCCCGGAGAAATTC
CGAGCGTGTGTGCACCATCGCACCCGGTCTCTGTGCTGGAGGTGTGCGCT
AGCAAGGATCCGATTGTGAAGCTGGACTTGTGTACAAGTGTTATCGAGAA
TTGGACTTTAAACGATGGATGTGCCAAGAAGCCGACGTTTGAGAAGACGA
GGGACTACGACTGTGACTTGTCTAAGCCGGTGGATGATAATAAAGGGTAT
GACCAGTGGAGGGATCATAATTGCATGTTGTCTGGGAATGAGACGGAGAT
GAGTGGGTGGACGTGTGAAGGGGGGAGCGAGGTAGAGTTCTGGTGGATGC
GGGGGGCGATGCATGATCCGGCCTTCTCGAGCCAGTGGTCGGATGACGTG
GTGGCATGGTTGATGAGTAAGACTTACGTTGAGGCTTGA
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protein sequence of NO05G05180.1

>NO05G05180.1-protein ID=NO05G05180.1-protein|Name=NO05G05180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MLGHSNGGAMTQILGCDHAELFAALASVTPGEIPSVCAPSHPVSVLEVCA
SKDPIVKLDLCTSVIENWTLNDGCAKKPTFEKTRDYDCDLSKPVDDNKGY
DQWRDHNCMLSGNETEMSGWTCEGGSEVEFWWMRGAMHDPAFSSQWSDDV
VAWLMSKTYVEA*
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Synonyms
Publications