NO05G05140, NO05G05140 (gene) Nannochloropsis oceanica

Overview
NameNO05G05140
Unique NameNO05G05140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length372
Alignment locationchr5:1352459..1352830 +

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Properties
Property NameValue
DescriptionNadh dehydrogenase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1352459..1352830 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR016464NADH_Ub_cplx-1_asu_su-2
IPR007741Ribosome/NADH_DH
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
[Close]
BLAST of NO05G05140 vs. NCBI_GenBank
Match: XP_005854353.1 (NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 2 [Nannochloropsis gaditana CCMP526] >XP_005856140.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 2 [Nannochloropsis gaditana CCMP526] >EKU20208.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 2 [Nannochloropsis gaditana CCMP526] >EKU22006.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 240.7 bits (613), Expect = 2.400e-60
Identity = 113/123 (91.87%), Postives = 118/123 (95.93%), Query Frame = 0 
Query:    1 MAAWRASISKHVRELRFLISASEESSAAARSYIKKNYDELKMLNPKTPFLVRDGWPGKDPYIVATYDWGKEVSKTIGGLDEKGIDALLKGLVEEGKSLPKFTHPPLNGTPDAIVDALPRDAFY 124
            MAAWRASISKHVRELRFLISASEESSAAARSYI+ NYDELKMLNP TPFLVRDGWPGKDPY+VATYDWGKEV KT+GGLDEKGIDALLKGLVE+GKSLPK+THPPL GTPDAIVDALPRD FY
Sbjct:    1 MAAWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPKYTHPPLRGTPDAIVDALPRDVFY 123
[Close]
BLAST of NO05G05140 vs. NCBI_GenBank
Match: EWM27883.1 (nadh dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 240.7 bits (613), Expect = 2.400e-60
Identity = 113/123 (91.87%), Postives = 118/123 (95.93%), Query Frame = 0 
Query:    1 MAAWRASISKHVRELRFLISASEESSAAARSYIKKNYDELKMLNPKTPFLVRDGWPGKDPYIVATYDWGKEVSKTIGGLDEKGIDALLKGLVEEGKSLPKFTHPPLNGTPDAIVDALPRDAFY 124
            MAAWRASISKHVRELRFLISASEESSAAARSYI+ NYDELKMLNP TPFLVRDGWPGKDPY+VATYDWGKEV KT+GGLDEKGIDALLKGLVE+GKSLPK+THPPL GTPDAIVDALPRD FY
Sbjct:   26 MAAWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPKYTHPPLRGTPDAIVDALPRDVFY 148
[Close]
BLAST of NO05G05140 vs. NCBI_GenBank
Match: XP_009524795.1 (hypothetical protein PHYSODRAFT_557851 [Phytophthora sojae] >EGZ22078.1 hypothetical protein PHYSODRAFT_557851 [Phytophthora sojae])

HSP 1 Score: 102.1 bits (253), Expect = 1.300e-18
Identity = 48/98 (48.98%), Postives = 68/98 (69.39%), Query Frame = 0 
Query:    3 AWRASISKHVRELRFLISASEESSAAARSYIKKNYDELKMLNPKTPFLVRDGWPGKDPYIVATYDWGKEVSKTIGGLDEKGIDALLKGLVEEGKSLPK 101
            +WRA IS+ ++ELRF+   + +SSA  R++ +KNY ELKMLNP TPF+ R+     +P++ A +DWGKE    + G  +K I A+LKGLV+ G SLPK
Sbjct:    2 SWRAQISRSIQELRFVACDTSQSSAGLRTFFRKNYGELKMLNPNTPFVYREA-EEMEPFVYARFDWGKEKKVPVPGKSDKEILAVLKGLVDHGLSLPK 98
[Close]
BLAST of NO05G05140 vs. NCBI_GenBank
Match: POM71161.1 (NADH-ubiquinone oxidoreductase 10.5 kDa subunit [Phytophthora palmivora var. palmivora])

HSP 1 Score: 99.0 bits (245), Expect = 1.100e-17
Identity = 45/98 (45.92%), Postives = 68/98 (69.39%), Query Frame = 0 
Query:    3 AWRASISKHVRELRFLISASEESSAAARSYIKKNYDELKMLNPKTPFLVRDGWPGKDPYIVATYDWGKEVSKTIGGLDEKGIDALLKGLVEEGKSLPK 101
            +WRA IS+ ++ELRF+   + +SSA  R++ +KNYDELKMLNP+TPF+ R+     +P++ A +DWG E    + G  +K I  +L+GLV+ G +LPK
Sbjct:    2 SWRAQISRSIQELRFVACDTSQSSAGLRTFFRKNYDELKMLNPRTPFVYREA-EEMEPFVYARFDWGVEKKVPVPGKSDKEILTVLRGLVDHGLTLPK 98
[Close]
BLAST of NO05G05140 vs. NCBI_GenBank
Match: XP_008907875.1 (hypothetical protein PPTG_12903 [Phytophthora parasitica INRA-310] >ETI43255.1 hypothetical protein F443_11704 [Phytophthora parasitica P1569] >ETK83323.1 hypothetical protein L915_11394 [Phytophthora parasitica] >ETL36787.1 hypothetical protein L916_11300 [Phytophthora parasitica] >ETL89915.1 hypothetical protein L917_11192 [Phytophthora parasitica] >ETM43209.1 hypothetical protein L914_11238 [Phytophthora parasitica] >ETN06907.1 hypothetical protein PPTG_12903 [Phytophthora parasitica INRA-310] >ETO71906.1 hypothetical protein F444_11788 [Phytophthora parasitica P1976] >ETP13105.1 hypothetical protein F441_11637 [Phytophthora parasitica CJ01A1] >ETP41129.1 hypothetical protein F442_11606 [Phytophthora parasitica P10297] >KUF92545.1 NADH dehydrogenase 1 alpha subcomplex subunit 2 [Phytophthora nicotianae] >KUF99341.1 Histone-lysine N-methyltransferase [Phytophthora nicotianae])

HSP 1 Score: 98.6 bits (244), Expect = 1.400e-17
Identity = 45/98 (45.92%), Postives = 68/98 (69.39%), Query Frame = 0 
Query:    3 AWRASISKHVRELRFLISASEESSAAARSYIKKNYDELKMLNPKTPFLVRDGWPGKDPYIVATYDWGKEVSKTIGGLDEKGIDALLKGLVEEGKSLPK 101
            +WRA IS+ ++ELRF+   + +SSA  R++ +KNY+ELKMLNP+TPF+ R+     +P++ A +DWG E    + G  +K I  +LKGLV+ G +LPK
Sbjct:    2 SWRAQISRSIQELRFVACDTSQSSAGLRTFFRKNYEELKMLNPRTPFVYREA-EEMEPFVYARFDWGVEKKVPVPGKSDKEILTVLKGLVDHGLTLPK 98
[Close]
BLAST of NO05G05140 vs. NCBI_GenBank
Match: XP_008609381.1 (hypothetical protein SDRG_05445 [Saprolegnia diclina VS20] >EQC37219.1 hypothetical protein SDRG_05445 [Saprolegnia diclina VS20])

HSP 1 Score: 96.3 bits (238), Expect = 7.200e-17
Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = 0 
Query:    3 AWRASISKHVRELRFLISASEESSAAARSYIKKNYDELKMLNPKTPFLVRDGWPGKDPYIVATYDWGKEVSKTIGGLDEKGIDALLKGLVEEGKSLPK 101
            +WRA IS++V+ELRF+  ++ ESS+  RS+ ++NY+ELKMLNP+TPF+ R+    K P++ A YDWGKE    +       I  +LK LV+ G SLP+
Sbjct:    2 SWRAQISRNVQELRFVACSTSESSSGLRSFFRRNYNELKMLNPRTPFVYREAEELK-PFVYARYDWGKEKQVFLDDKTPDEITRILKDLVDHGASLPR 98
[Close]
BLAST of NO05G05140 vs. NCBI_GenBank
Match: OQR97854.1 (hypothetical protein ACHHYP_09871 [Achlya hypogyna])

HSP 1 Score: 95.5 bits (236), Expect = 1.200e-16
Identity = 44/98 (44.90%), Postives = 66/98 (67.35%), Query Frame = 0 
Query:    3 AWRASISKHVRELRFLISASEESSAAARSYIKKNYDELKMLNPKTPFLVRDGWPGKDPYIVATYDWGKEVSKTIGGLDEKGIDALLKGLVEEGKSLPK 101
            +WRA IS++V+ELRF+  A+ ESS+  R + ++NY+ELKMLNP+TPF+ R+     +P++ A YDWG E    +   +   I  +LK LVE G+ LP+
Sbjct:    2 SWRAQISRNVQELRFVACATSESSSGLRKFFRRNYNELKMLNPRTPFVYREA-EDLEPFVYARYDWGVEKQVYLNNKNADEITRILKDLVEHGEKLPR 98
[Close]
BLAST of NO05G05140 vs. NCBI_GenBank
Match: XP_012199859.1 (hypothetical protein SPRG_05892 [Saprolegnia parasitica CBS 223.65] >KDO29356.1 hypothetical protein SPRG_05892 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 95.1 bits (235), Expect = 1.600e-16
Identity = 45/98 (45.92%), Postives = 67/98 (68.37%), Query Frame = 0 
Query:    3 AWRASISKHVRELRFLISASEESSAAARSYIKKNYDELKMLNPKTPFLVRDGWPGKDPYIVATYDWGKEVSKTIGGLDEKGIDALLKGLVEEGKSLPK 101
            +WRA IS++V+ELRF+  ++ ESS+  R++ ++NY+ELKMLNP+TPF+ R+    K P++ A YDWGKE    +       I  +LK LV+ G SLP+
Sbjct:    2 SWRAQISRNVQELRFVACSTSESSSGLRTFFRRNYNELKMLNPRTPFVYREAEELK-PFVYARYDWGKEKQVFLDDKTPDEITRILKDLVDHGASLPR 98
[Close]
BLAST of NO05G05140 vs. NCBI_GenBank
Match: OWZ10298.1 (hypothetical protein PHMEG_00016873 [Phytophthora megakarya])

HSP 1 Score: 95.1 bits (235), Expect = 1.600e-16
Identity = 43/98 (43.88%), Postives = 67/98 (68.37%), Query Frame = 0 
Query:    3 AWRASISKHVRELRFLISASEESSAAARSYIKKNYDELKMLNPKTPFLVRDGWPGKDPYIVATYDWGKEVSKTIGGLDEKGIDALLKGLVEEGKSLPK 101
            +WRA IS+ ++ELRF+   + +SSA  R++ +KNY+ELKMLNP+TPF+ R+     +P++ A +DWG E    +    +K I  +L+GLV+ G +LPK
Sbjct:    2 SWRAQISRSIQELRFVACDTSQSSAGLRTFFRKNYEELKMLNPRTPFVYREA-EEMEPFVYARFDWGVEQKVPVPNKSDKEILTVLRGLVDHGLTLPK 98
[Close]
BLAST of NO05G05140 vs. NCBI_GenBank
Match: XP_024586330.1 (nadh dehydrogenase [Plasmopara halstedii] >CEG49961.1 nadh dehydrogenase [Plasmopara halstedii])

HSP 1 Score: 94.7 bits (234), Expect = 2.100e-16
Identity = 44/98 (44.90%), Postives = 65/98 (66.33%), Query Frame = 0 
Query:    3 AWRASISKHVRELRFLISASEESSAAARSYIKKNYDELKMLNPKTPFLVRDGWPGKDPYIVATYDWGKEVSKTIGGLDEKGIDALLKGLVEEGKSLPK 101
            +WRA IS+ +RELRF+   + +SSA  R++ +KNY ELKMLNP TPF+ R+     +P++ A +DWG E    +    ++ I  +LKGLV+ G +LPK
Sbjct:    2 SWRAQISRSIRELRFVACDTSQSSAGLRTFFRKNYSELKMLNPGTPFVYREA-DEMEPFVYARFDWGVEKKVLVADKSDEEILTILKGLVDHGLTLPK 98
The following BLAST results are available for this feature:
BLAST of NO05G05140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854353.12.400e-6091.87NADH dehydrogenase (ubiquinone) 1 alpha subcomplex... [more]
EWM27883.12.400e-6091.87nadh dehydrogenase [Nannochloropsis gaditana][more]
XP_009524795.11.300e-1848.98hypothetical protein PHYSODRAFT_557851 [Phytophtho... [more]
POM71161.11.100e-1745.92NADH-ubiquinone oxidoreductase 10.5 kDa subunit [P... [more]
XP_008907875.11.400e-1745.92hypothetical protein PPTG_12903 [Phytophthora para... [more]
XP_008609381.17.200e-1746.94hypothetical protein SDRG_05445 [Saprolegnia dicli... [more]
OQR97854.11.200e-1644.90hypothetical protein ACHHYP_09871 [Achlya hypogyna... [more]
XP_012199859.11.600e-1645.92hypothetical protein SPRG_05892 [Saprolegnia paras... [more]
OWZ10298.11.600e-1643.88hypothetical protein PHMEG_00016873 [Phytophthora ... [more]
XP_024586330.12.100e-1644.90nadh dehydrogenase [Plasmopara halstedii] >CEG4996... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR078ncniR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003329NSK003329Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G05140.1NO05G05140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611444gene_10591Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100323g5gene2677Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G05140.1NO05G05140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G05140 ID=NO05G05140|Name=NO05G05140|organism=Nannochloropsis oceanica|type=gene|length=372bp
ATGGCCGCATGGCGTGCCTCCATTTCAAAGCACGTGCGGGAGCTGCGCTT
CCTTATCAGCGCCTCGGAGGAGAGCAGTGCCGCGGCCCGCTCTTACATCA
AGAAAAACTACGACGAACTCAAGATGCTCAACCCCAAGACCCCCTTCCTC
GTGCGTGACGGGTGGCCAGGAAAGGACCCATACATAGTAGCGACGTATGA
CTGGGGGAAGGAAGTGAGCAAGACCATTGGGGGCCTGGACGAGAAGGGAA
TTGATGCTCTGTTGAAAGGCTTGGTGGAGGAAGGAAAGAGCCTGCCCAAA
TTTACCCACCCGCCGCTGAACGGCACGCCCGACGCAATTGTCGACGCGCT
GCCACGGGACGCATTTTATTGA
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protein sequence of NO05G05140.1

>NO05G05140.1-protein ID=NO05G05140.1-protein|Name=NO05G05140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MAAWRASISKHVRELRFLISASEESSAAARSYIKKNYDELKMLNPKTPFL
VRDGWPGKDPYIVATYDWGKEVSKTIGGLDEKGIDALLKGLVEEGKSLPK
FTHPPLNGTPDAIVDALPRDAFY*
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Synonyms
Publications