NO05G05140.1, NO05G05140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G05140.1
Unique NameNO05G05140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length372
Alignment locationchr5:1352459..1352830 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1352459..1352830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO05G05140.1 vs.
Match: XP_005854353.1 (NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 2 [Nannochloropsis gaditana CCMP526]; XP_005856140.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 2 [Nannochloropsis gaditana CCMP526]; EKU20208.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 2 [Nannochloropsis gaditana CCMP526]; EKU22006.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 240.7 bits (613), Expect = 2.400e-60
Identity = 113/123 (91.87%), Postives = 118/123 (95.93%), Query Frame = 0 
Query:    1 MAAWRASISKHVRELRFLISASEESSAAARSYIKKNYDELKMLNPKTPFLVRDGWPGKDPYIVATYDWGKEVSKTIGGLDEKGIDALLKGLVEEGKSLPKFTHPPLNGTPDAIVDALPRDAFY 124
            MAAWRASISKHVRELRFLISASEESSAAARSYI+ NYDELKMLNP TPFLVRDGWPGKDPY+VATYDWGKEV KT+GGLDEKGIDALLKGLVE+GKSLPK+THPPL GTPDAIVDALPRD FY
Sbjct:    1 MAAWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPKYTHPPLRGTPDAIVDALPRDVFY 123
The following BLAST results are available for this feature:
BLAST of NO05G05140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854353.12.400e-6091.87NADH dehydrogenase (ubiquinone) 1 alpha subcomplex... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G05140NO05G05140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G05140.1NO05G05140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G05140.1.cds1NO05G05140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G05140.1 ID=NO05G05140.1|Name=NO05G05140.1|organism=Nannochloropsis oceanica|type=mRNA|length=372bp
ATGGCCGCATGGCGTGCCTCCATTTCAAAGCACGTGCGGGAGCTGCGCTT
CCTTATCAGCGCCTCGGAGGAGAGCAGTGCCGCGGCCCGCTCTTACATCA
AGAAAAACTACGACGAACTCAAGATGCTCAACCCCAAGACCCCCTTCCTC
GTGCGTGACGGGTGGCCAGGAAAGGACCCATACATAGTAGCGACGTATGA
CTGGGGGAAGGAAGTGAGCAAGACCATTGGGGGCCTGGACGAGAAGGGAA
TTGATGCTCTGTTGAAAGGCTTGGTGGAGGAAGGAAAGAGCCTGCCCAAA
TTTACCCACCCGCCGCTGAACGGCACGCCCGACGCAATTGTCGACGCGCT
GCCACGGGACGCATTTTATTGA
back to top

protein sequence of NO05G05140.1

>NO05G05140.1-protein ID=NO05G05140.1-protein|Name=NO05G05140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MAAWRASISKHVRELRFLISASEESSAAARSYIKKNYDELKMLNPKTPFL
VRDGWPGKDPYIVATYDWGKEVSKTIGGLDEKGIDALLKGLVEEGKSLPK
FTHPPLNGTPDAIVDALPRDAFY*
back to top

mRNA from alignment at chr5:1352459..1352830+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G05140.1 ID=NO05G05140.1|Name=NO05G05140.1|organism=Nannochloropsis oceanica|type=mRNA|length=372bp|location=Sequence derived from alignment at chr5:1352459..1352830+ (Nannochloropsis oceanica)
ATGGCCGCATGGCGTGCCTCCATTTCAAAGCACGTGCGGGAGCTGCGCTT
CCTTATCAGCGCCTCGGAGGAGAGCAGTGCCGCGGCCCGCTCTTACATCA
AGAAAAACTACGACGAACTCAAGATGCTCAACCCCAAGACCCCCTTCCTC
GTGCGTGACGGGTGGCCAGGAAAGGACCCATACATAGTAGCGACGTATGA
CTGGGGGAAGGAAGTGAGCAAGACCATTGGGGGCCTGGACGAGAAGGGAA
TTGATGCTCTGTTGAAAGGCTTGGTGGAGGAAGGAAAGAGCCTGCCCAAA
TTTACCCACCCGCCGCTGAACGGCACGCCCGACGCAATTGTCGACGCGCT
GCCACGGGACGCATTTTATTGA
back to top

Coding sequence (CDS) from alignment at chr5:1352459..1352830+

>NO05G05140.1 ID=NO05G05140.1|Name=NO05G05140.1|organism=Nannochloropsis oceanica|type=CDS|length=372bp|location=Sequence derived from alignment at chr5:1352459..1352830+ (Nannochloropsis oceanica)
ATGGCCGCATGGCGTGCCTCCATTTCAAAGCACGTGCGGGAGCTGCGCTT
CCTTATCAGCGCCTCGGAGGAGAGCAGTGCCGCGGCCCGCTCTTACATCA
AGAAAAACTACGACGAACTCAAGATGCTCAACCCCAAGACCCCCTTCCTC
GTGCGTGACGGGTGGCCAGGAAAGGACCCATACATAGTAGCGACGTATGA
CTGGGGGAAGGAAGTGAGCAAGACCATTGGGGGCCTGGACGAGAAGGGAA
TTGATGCTCTGTTGAAAGGCTTGGTGGAGGAAGGAAAGAGCCTGCCCAAA
TTTACCCACCCGCCGCTGAACGGCACGCCCGACGCAATTGTCGACGCGCT
GCCACGGGACGCATTTTATTGA
back to top
Synonyms
Publications