NO05G05090, NO05G05090 (gene) Nannochloropsis oceanica

Overview
NameNO05G05090
Unique NameNO05G05090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5891
Alignment locationchr5:1328934..1334824 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1328934..1334824 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR027267AH/BAR-dom
IPR003618TFIIS_cen_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO05G05090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR078ncniR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G05090.1NO05G05090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|352822gene_10597Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100288g1gene2670Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G05090.1NO05G05090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G05090 ID=NO05G05090|Name=NO05G05090|organism=Nannochloropsis oceanica|type=gene|length=5891bp
ATGCATGTCGATGAGGCTCCCGTGGCACGTCAGTCCAAGCGAGCTGGAGT
AGCAATAACAGCAGCAGCTAGAGGTAGGAGAGAAAGGGGGGGCAGGGCAG
TCAAGAGGTTGAAGCGGGAAGCAAAGAAAGAGGCGGCGGCAGCGGCCGAA
GCACTAGAAAAAGATGCAGGAGAAAGAGGAGGAGGAGGAAGTGGAGGAGG
AGGAGGAAATGGAGGAGGAGAAGGCGGTGGTGGTGTTAATGCACCGGTCG
TGAAGAGGAAGgtagggcggcctcggaaaaataaaggggcggaggtgttt
gtccctcctcctcctccctccccgtcaagCCCTCCCTCCCCCGCCCGCTC
TGCCACCTCCTTCCTTTCCCTGTCCCCCCCCCCTCCCCCGAGCCCTCCTT
AGGGGAGGAAATGGAGGGAGAGGTGGACTATGACAGTGAGGAAGAAGAGA
AGCAGGACAAGGAGGAGAATGATGAGAAGGAGGATAATAAAGAGTCATTA
CCAGTACCCTCAGCGGAGGGAAAACAGGAAGGGTCGTCGGGAGGCCCTGC
CCCCTCCTCTCCCTTCTTCTCCCCCTCCTCCTCCTCTTCCCGCCTTCCAC
CGTCACCCCGTACCTCCACGTCCTGTTCCTCCTTCTCGCCCTCCCGCCCG
AGACCTCTTGCGGCTGCCAACTGCTCTCCATCCCCTCCTCACCACACCTC
CGTCGCTATCATTCCATCTGCTGCGGCTGCTGCGGTTGCTGCTAGTAGCA
CAGCCACAAGCCCAAAATCTACCTGCATTGCCCCTCCGTCCATTTCGGAC
CTTCCCCCCAAATCATCCACCTGCATTGCCCTCGGCTGCCATTCTTCCCT
CCCTCCCTCCTCCCCTCCCTCCTCCTCGCCATCGCCCTACTGCAGCCAGC
TCTGCTTGGTGAAGGAAGCACGCCCCCTCCTTTGGGCTCTGGGGGAGGTT
AAGGAGCACCTTGCCATGGACTGGCTCGCACGGGCGATTTGTGCGGTGGA
GGGAAAGGGGGAGGAAGGGAAGGACGCAGGGAGGGAAGCTAGGAGTGCGG
TGCTGCAGAATATTCTGACGTTTGTCGGGGAGGAGGTGGGGGAAAGGGCA
GAGGGAGGGAGGAAGGGAGGGAGGAGAGGGTCATCATTGCTAGCTTTTAA
TCGACCGCCTCTCGCGCCACTTCTTGCCCCGCCCTCCACGCAAACCCCTT
CCTTGAACCAGAAAGATGAAGGAAGAGAAGCAGCAGCAGCAGCAGCAGCA
GCAACGACAGCAGCAGCAACAGCAACAACAGCCACAATTACAGAAGGCAG
CTTTGCCCTCCTTTCCCTCCCCCCCCACCCCTCCGgtgaggaggagcaca
ctctaggacttcccccccttcctcccccccccctccctcccactcactgc
tagACAAGAAAAAGCAGCATCTCCCTCGGGGAATGACGCGGAGGAAGGCC
GGTGTGGGCGTCAGAGAGAGGAGTCGACGACGGTTTCTCGAAGCCCTCTT
CAATGCCGCCTCGCTCCATCTCAGGAAGAGGGAGGGTGGGAGGGAGGGAG
AGAAGGAGGAGGAGGGCCGGGAGGAAGAAAATGAGGGAGGGAAGCAGGCA
AGCGCGCTTCGGCAGGCGGCCGTAGTAGCCTATGACTTGGAAGGGTGCGT
CTTCCACCACTGGGGTCCATCCGGAGGACGAGGAGGAGGGAGGGGAGGGA
GGAAGGGGGGGATGTCAGCGTATAAACAGCAGGTGCGACGGTTGTGGGTG
GCGCTGGGGAACGGGACGGAAGACGAGAGTAGTCTGTCGGTGAAGGCACT
GAGGGGGGAGGTGCTGATGGAGGACTTGGCAGTGATGTCTGGGGAAGGGC
TGGCCAGTGAGGAGGTGAGGAGGATGCGGGAGAAGGGGGAGGCCGAAGCG
GTGAGAGCGATAATGGTGAAGAGAGGGAGGGAAGGTGGAGGGGGGACAGT
GGTTTTGAAGGGGAGGGAGGGGATCAAGTTGGTAAAACCATGGGATATGC
GAAGAGAGACGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAATGTGAGGATGTGAGTAA
CCCAGAGACTGATGCGGACCAGGAGTCTGAAGAGCAGCAGCAGCAGCAGC
AGCAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAGCAACAACAACAACAACAACA
GCAACAACAACAACAACAACAGCAACAACAACAACAACAACAACAACAAC
AACAGCAACAACAACAACAACAACAACAGCAACAACAACAACAACAAGAG
CAGCAGCAGCAGCAGCAGCAACAGAAGAAAGAAGAGAAGGGGAAAGCCGA
GCAGCAACAGGAGGAAAAGGAGCGGCAGCAAGTGTTGGCATCCCCCTTCC
CCTCTGCCTCTTCTTTCTTCGGCTCATTCCCCCCCCAAGGGGTAGGGAAC
GAGTCACCGGGGACGGCGCTCCTCCTGGTGGAGGCAGCTGAAGCAGCAGC
TGCCGCGTTGGGTGATAGGAAGGATGGCATCCACGTGGTTCCACCCACAC
TCCTCCCCTCTCGGGGTGCTTCTTCTACTCCTTCCACTGCTCCTGCTCCT
CCCACTGCTCTGATGCTGCCTTCCTCCTTGCGACTGGAGATGCCGCAGTG
GGAGACAAAGAGTGGGGAAAGCAACAGCTCGAGGGAGGAGGAGGAGGAGG
AGGGAAAAGAGGAGGAGGAGGGAAAGGGGGATAAAGCAGAAGAGCGTCTG
CCGGCGACCTGGGCCATGGCAGAAGGAGGGGGGAAGAGGAGGGAGGGAGC
CACAAGGGTGGAGGAGGGGAAAGAACCTCACCCCTCCTGCACTAATGGTG
CAGTCAGCTGTGTCTCTACTGCTGCTGCTCCCCAGCGTCCTCCCTCCCTT
CCTCCAGCAGTCGCTCGCAGTAGCCATACCATGGCCAACAGAAGGAAGGA
AGGGAGGGAGAGAGGGAGGGAGGGTGGGCAGGTTGCCATCGCTAGCACCC
CCCTCCCTCCAGCCTGGGCCTTCCTTTCCGCTTCCTCCACCCCTGCGCCC
CCTGGGTCCCCTTTCCCCTGTGTCTACCATTTGCACCTCGACCACCCCCC
CTTCTCCTTTCACAAGCCTTGTCCTTCCCTCCGTCCTTCTCCCCTACGGA
TGGACGTGGGCCTCGCTGCTCCTATTCTTGCCCTCCCCCGGCTCATGACC
TTCCTCCCGCCCTCCTTGGTGGTGGGGGGATGGACGTCACTGGATGCCGG
CACTCAATTCCTCAGGAAGGTCTTgtcgactgcacagcgacaccccgaga
gacacttcttcgtgcatatccgagtgctccctgtctatgatcaagGCAAG
GAGGAGGAGGAGGAGGAGGAGGAGGGAGGGAAGAAGGGAGGGGGGGGCTG
GTGGGAGTATCAGAGGAGGTTGAGGGACCCGGCGAATCCGCAGATGGCGC
GAATGGTGCCCTTGAGGAAAGGAGGGTGGGAAGGGGGGGGGCGGAGGAAG
AAGAAGAGGGAGGGTGGAGCGAGGAGCGATTGGAGGGAGGGACGTTGCGG
ATTCATTTGGTGCCCCGGGCGACAGTGCGAGACCTCTGGGGGCAGGAGGC
GGTGCAGGGCGGGATGGAGGAAGGGAAGGAGATGCATTTGATTATACATT
GGAAGGCGCCTGGTTTGTCGATCAGCACCTGCTCCCCTTCCTCCTTCTCG
GAAGGGGAGGAGGGGCAGCTTCAAGTCTCCCCGTCATTCCAAGAGGATGG
CTTGCGGTCTCCGGAGGGGGGGGGCGAGGAGGAGGAGGGAGGGAGGGAGG
CCGGGAAAGAGGTTGCCACATCGTTTCGTAACCTTCGTGACCCCGGAGCA
GCACCAGTCGCTGCAGCCACAGTAGCTGCAGCAGCTGCAGTACCAGCTGC
GCCTTCTGCTCCTGCCCTCCCGGCCCCCACAGCAGAGGAACAGTACCTCC
TAGCCCCTTTCCCCCCTCAACAGCAGCAGCAACAAGATACCCACCCCTCC
CGCCTCTCCTCCCCCTCTCCCTTCCTTCTCCCCATGCCCAGCAGCAGCGA
CAGCGCCAATAACTTCCTGCCCTTCCCCCACTTTTTCCACTCCCCCTCCT
CCTCTCGCCCCCTCTCCCATCCGTCCTTCCCCTTCCCTCCTCCTCCACCT
TCCCCTCCTTCTCCCCCTTCCGTCCCTTCCCTTCTCCCTTCCCCGGAGCT
TCGGGCCAAGATGGAGAAGACAATCGACTTTCTCATTGCCCGCGCCTCCC
CATCGCAGACCCTCCGAGAGCTCAAGGACAAAATCGCGGCCGACCCCACA
GCGTACAACGGGATGGACTTCGTTTTCGAGGAAAACCAGGACCATGTCTA
CTTCCGCCAGCTGCTTGCAGGGAGGCTGGGAGGAGTGGCAAGGGCGGGGG
GAGGGCTTCTTCCCTCCCGTCCTCCCTCGGTCCCCTCGTGTCTAGATATT
ACGGGAAGGACGGCTGCCCCTTCGCCGTTGCCGGACCGACCTCCCTCCTT
CCCTCTCTCCAACCAGCTCCACCCCTCTACCGTCGTTTCCCACTTGTCTT
CCTTTGCCACAGACCCGGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCC
ACAGCTATGATGAGCGGGCGGATCGGCAGCAGTAACTCGCCCATCCCTCC
CCCTTACCCTCGTCCACCCTCCGTTTCCTCTTTGGGGGCTGGAGGAGGAG
GAGTAAGGAAGGAGGGAAGAAGGAAGGGAGGGGGCCATTGGGATCATCAC
CCTGCTTATCCTTTGCCTGGTCATTCGCGGGAGGTTGGGGGGGAGGAGGG
GTGGAAAAATAGACATGCTTTTCCGCCAAGCGTAGACAGCATTTATCACA
ACCATTACGGCCCCGGCAGCAGCGATAGCAGCAGCAGTAGCTGCAGCAAC
AGGAGTAAGAGCCCTTCCTCATTCAATTCCTCCTCCGGTTTATCCGTGAG
GCACTGGCCCAGGGAGAGAGGCGAAGATCAACGAGGACGAGGGTGGGAGG
GCGGAAGGGCCGGTGATGAGGAGGAAGGGTTCAGCGAGCTGCCGTCCTGG
TCCCACGGGCCTCGTCTTCCTCTATCTTTTCCGCTTCCTCTTTCTCCCTC
TTTACAAAGCAGAGGAAGAGGGGCGGAGGGAGAAGAGGGAGGGACGGGGG
GACGGAGGGATTTAATTCCCTCGCGATCTGCTCTTCGATCGGATTCACCG
ACAAGGAGGTGGAGTGAAGGAGGAAGAGGAGAAGAGAGAGATGGAGGAGA
CGGGATTGGTGGTTGGGATGGTGGATGGAATGATGGCGGCAGAGAAGAGG
GAAATGGAGGGGAAGAAGACCTGAAGCTGAGGGATCCTCAAAGAGCGCGA
GGAAGAGGGAGAGGGAGAGGGAGAGGAAAAGGAAGAGGAGGAGGAAGCGG
AGAAAGAGGAAGAGGAGGAGAGAGGAGAGGAGAGAGGGTCGGACGAGGAC
GAAGGCAGTATTGAATTTTTTGGGGAGAAAGAGGAAACATGCATGGTGAC
CATGCCAGAATCGCATCCCTTTTATACAGGCACACGCACCTACACAGTGA
AGAAAGAGAATTTGGTCGTCTCTGTGAGAGGAGCACAAAGGAAAAAGACT
GAAGGTGAAGGAGAGTAGGCAGAGGAAGAGGGAGAGATAAGGAAAGGAGG
AAAACGAGAAGAGGGAAAGGGAGTGGTGTGTACATGCGTGTATAAATTTG
ACTGTGTGGGCGCCCAAGCCTGTGAGTGATGGATACACAGAGGAGAGAGC
ATGGGGATGGTCTTCTTTAATACTAACAATCACGAGCCGTCGAACAGAGG
CCTGACATAATGAAATAATAACATGATGACAACATGGTGAT
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protein sequence of NO05G05090.1

>NO05G05090.1-protein ID=NO05G05090.1-protein|Name=NO05G05090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1769bp
MHVDEAPVARQSKRAGVAITAAARGRRERGGRAVKRLKREAKKEAAAAAE
ALEKDAGERGGGGSGGGGGNGGGEGGGGVNAPVVKRKPSLPRPLCHLLPF
PVPPPSPEPSLGEEMEGEVDYDSEEEEKQDKEENDEKEDNKESLPVPSAE
GKQEGSSGGPAPSSPFFSPSSSSSRLPPSPRTSTSCSSFSPSRPRPLAAA
NCSPSPPHHTSVAIIPSAAAAAVAASSTATSPKSTCIAPPSISDLPPKSS
TCIALGCHSSLPPSSPPSSSPSPYCSQLCLVKEARPLLWALGEVKEHLAM
DWLARAICAVEGKGEEGKDAGREARSAVLQNILTFVGEEVGERAEGGRKG
GRRGSSLLAFNRPPLAPLLAPPSTQTPSLNQKDEGREAAAAAAAATTAAA
TATTATITEGSFALLSLPPHPSDKKKQHLPRGMTRRKAGVGVRERSRRRF
LEALFNAASLHLRKREGGREGEKEEEGREEENEGGKQASALRQAAVVAYD
LEGCVFHHWGPSGGRGGGRGGRKGGMSAYKQQVRRLWVALGNGTEDESSL
SVKALRGEVLMEDLAVMSGEGLASEEVRRMREKGEAEAVRAIMVKRGREG
GGGTVVLKGREGIKLVKPWDMRRETEEEEEEEEEEEEEEEEEEEEEEKEC
EDVSNPETDADQESEEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEQQQQQQQQKKEE
KGKAEQQQEEKERQQVLASPFPSASSFFGSFPPQGVGNESPGTALLLVEA
AEAAAAALGDRKDGIHVVPPTLLPSRGASSTPSTAPAPPTALMLPSSLRL
EMPQWETKSGESNSSREEEEEEGKEEEEGKGDKAEERLPATWAMAEGGGK
RREGATRVEEGKEPHPSCTNGAVSCVSTAAAPQRPPSLPPAVARSSHTMA
NRRKEGRERGREGGQVAIASTPLPPAWAFLSASSTPAPPGSPFPCVYHLH
LDHPPFSFHKPCPSLRPSPLRMDVGLAAPILALPRLMTFLPPSLVVGGWT
SLDAGTQFLRKVLQGGGGGGGGGREEGRGGLVGVSEEVEGPGESADGANG
ALEERRVGRGGAEEEEEGGWSEERLEGGTLRIHLVPRATVRDLWGQEAVQ
GGMEEGKEMHLIIHWKAPGLSISTCSPSSFSEGEEGQLQVSPSFQEDGLR
SPEGGGEEEEGGREAGKEVATSFRNLRDPGAAPVAAATVAAAAAVPAAPS
APALPAPTAEEQYLLAPFPPQQQQQQDTHPSRLSSPSPFLLPMPSSSDSA
NNFLPFPHFFHSPSSSRPLSHPSFPFPPPPPSPPSPPSVPSLLPSPELRA
KMEKTIDFLIARASPSQTLRELKDKIAADPTAYNGMDFVFEENQDHVYFR
QLLAGRLGGVARAGGGLLPSRPPSVPSCLDITGRTAAPSPLPDRPPSFPL
SNQLHPSTVVSHLSSFATDPAAAAAAAAAAATAMMSGRIGSSNSPIPPPY
PRPPSVSSLGAGGGGVRKEGRRKGGGHWDHHPAYPLPGHSREVGGEEGWK
NRHAFPPSVDSIYHNHYGPGSSDSSSSSCSNRSKSPSSFNSSSGLSVRHW
PRERGEDQRGRGWEGGRAGDEEEGFSELPSWSHGPRLPLSFPLPLSPSLQ
SRGRGAEGEEGGTGGRRDLIPSRSALRSDSPTRRWSEGGRGEERDGGDGI
GGWDGGWNDGGREEGNGGEEDLKLRDPQRARGRGRGRGRGKGRGGGSGER
GRGGERRGERVGRGRRQY*
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Synonyms
Publications