NO05G05080, NO05G05080 (gene) Nannochloropsis oceanica

Overview
NameNO05G05080
Unique NameNO05G05080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3258
Alignment locationchr5:1325608..1328865 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1325608..1328865 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO05G05080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR078ncniR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003339NSK003339Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G05080.1NO05G05080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|352830gene_10600Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G05080.1NO05G05080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G05080 ID=NO05G05080|Name=NO05G05080|organism=Nannochloropsis oceanica|type=gene|length=3258bp
GTCCTGACAACTCCCATACATCTACACACAGATATGAGAATTAGTCCCAA
AACGTGCCTGGCGATTTATTACAGTACTTACACGTGCTTGTCTCGTTTTG
ATTGCGCTCGCCCTTTCCCCCTTTCCACAGATAACGGATAGATTGATCGT
GCGAGAGAGCTTCGCGGGCCTGTTGTATACCATTGTTAACACACGTAAGC
AGACGCCATCTATGATAAGCTACATCGACGACTACACCTTTCTCCTTCCT
CCTTTTCCATTCTTTGCATCAACATTTACTCACACGCATCATTACTCAGT
ACACACATACCGCTGAAGGGCACAAATCACGGACAACTATCGCTGCCATA
GCATGGCCCGCCCGTTGCGGTCGTGCCGGCGAAGAACGCGTATATATGAT
GGTTGCTCGTCCCTGACACTTGCGCATCGGAGTGTCGTTGTACGCAGAGT
TCCCCACCGCACATTCTCACACACATACACACACATACGCACATAGATAT
GCCAGCATCTAGGGGCCTTGAATGGCGGCGAGGCTCACGGAAACGAAAGC
TGCCGTCGCGATTTAAGGAGGAGACAGAGGAGGAGCAATACGACCAGCGG
CAGGAGGAGGAGGAGGAGGAGAAGGAGGAGCACGGGGAGTCGCTTTTACC
TTCACCAGCCTCCTACCAGATGCATGATGATGAGCAGGATGAAGAGGAGT
TGGAGGACGAAGAGGAGTTTGCAGTACTTTTTCCGGGGCCCTCTGCCTCC
ACCAACAGCAGCAGCAGCAGCACTATCTCACCCATCCACGTCCTCTCACG
ACGGTGCCGAGGCGGAAGTGTAAGGCGCGGGAGAGGAAGAGGTCGAGGAC
AAGGACAAGTAAGAGGAAAAGGAAGAGGAAAAGCTATGGAGCTCACTGCT
CTCTCTTACTCGTCCCCAAGGCGGCAGCACCGGAGTGCAGCTCATTGTGT
GCGGTTGACAGCTTCCCCGGCCACCGTCGCGGCTGCGCTCGAGGAAGAGA
AAACGAGAAAAAACAAGACGGAGATTGAGGAAGAAGAAAGCGAAGAGGAG
GAAGAGAAGGATTTGGCGCTTGATCGGGTGTTGCGGGGCGATGTGACAGT
GGCCGAGGCTCGGGCGTTGCTTGACCTGCCTGCTCAGGACGCCTTTGCGG
AGAGAAAGAAGAAGGGGAAAGGCCCTCGCATCCCGCACTTGAGCCGCCTA
TTGGAAAAGGATGAGGGGGGGGAGGGAGGGAAGGGGGGGGAAAGAGGCGC
GTTGCTGACGGTGGCCGAGCAGGTGGACCTGTTGGAGGAGGCTGCGAAAG
CCGGATGGGGGGATAACCACGTTTCCAGCGCAGACCGGCGGCACAAGGCC
TTAAACCTCCTCAAATGGGCCAAGGATTCTGCTGGAGTATGGCAAGCCCG
GAAGGCACTGCATCGTCGTCGACAACAGGCGGCAGCAGCATCTGCAGGAA
AAGAAGGAGGAGCAGAAAGAGACTCTCTTTCCCCCTCCTTGTCCTGTCCC
TCTTCCTCCTCCTCTTCCTCGTTCTCCTCCTCTTCTACAACCCCTATCTT
CATTAATCCCAGCAAGCTCGAGAAGCTCGCCCTCAAAGGCCCCGCCCTCC
TCCGAATCGCCCGCCGTACCTTCCTCTCCTCCTCCCCCTCCTCTTCCTCT
TCCCTCTCTATTCTCCTCTCCACCGTCGAGACGCTTTATTCCTCCTTCCA
GTCATGGTGTCAACGTGCGGGCCCTCTGGCGAACATTAAAAACACAACCA
GGCGCAAGACCGTTCAAAAAATGCCTTGGTCGCTGGTTGAGGAGCTGATG
GAGGACGAGGAGGAGGGAGGGGGGGATGCCTTTGCTTTGGTTGAAGTGCC
GGGACGACAGAATCTGATCGACCTGAAGCAGCAAGCTACGGTATGGAGGG
AGCAAGGAAGGAAGATTTGGGATAGAACAGCGCCAGGGGACACTCAAATT
CTAAAGGTGAGTGAGTGGAAAGACCCCCTCCTTCCCTCCCTCCCGCCTTC
CTCCTGTCGTGGAGAAGTCGGGGGCAAGGCCGTGGCCGGCGCTGCCATGG
CGGTGTTGGGAAAGCGAGAAATGCTGGATTTTGTGAATAGGAGCTACTCC
CTGTGGGAGGAGCAGGAGGTGGCCCCGGTGGAGATACCAGGGAAGACGGC
GCTGGAGTGGCTATGGCGGGTCGGGGATTGGGCTCGGAATGCCCTCGATC
ACGTGCGACGGGCCCGGGGGGAGGTTGGGAAGGAGGGTGGGGTAGAAGCG
CCCCGGGCGATGGGGTTGTCGGCGGAGGAGCTGGAGCGGTTGGTAGGGTC
TCCCCGGATTGAAGGCTTGCTGGGCCCTGGGGGTATGGAGGAGGGGTGGA
GGCAGGGTTTGATGGAGGAGGAGTACGAGGTGCGGGTGGTGGACAGGGAG
GAGGGGGAGGAGGGCGGGAAGGTGTTTATGTTGAGTGAATGGGTGGATCT
GAATAAGGAAAGCTGGCCGGTGTGGGCGCAAGAGTTGAGGGAGGGAGGGA
GGGAGGATGGGAGGGGGGTGGGGGTGGAGGTGGAGGTGAAGGGCTTTCGC
GGGAGGGAAGTGGTAGGGTCGCTACAGGTGTACCTTGGGATGAAGAGGTG
GGTGGCCCTGGCCGAGAAATGGAGAAGGACGGCCAGACAGCTCTTGAAAG
GGGAGGGAGGGGGGAAGGTCGGGAATGTCATCCCACCGACGGCGGGTGAA
TTGGAAAGCTTGTATCATCTGGGAACTGTACTGGCTCCGGGTTCGGAGGC
AGCAGTCGGTGAAACCTTGGCTGTATTGCACGAGAAATACGGGTTGAAGC
CTACCCCTGCCTTCCCTCCTTCCCTCCTTCCCTCTGTTGGTGGGCCCTTG
GCTTTGGTTTCGACGGTGGCGGCGGAGCTGGCGGCGAAGAAGGAAGGGAG
GGAGGGCGGGAAGGAGGGATGGTCTCGGTCAGCGACGCCGATTAGTTTTG
AGGCTGATAGTGAGGGAGAGGAGGAGGGAAGGAAGGAGGAAGGGGAGGGC
GGGATAAAAGTGGAAGGTGAGAAGGAGGAGGACAGAGAGGAGGAGGAGGA
CAGAGAGGAGGAGGAGGACAGAGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGAGAGTGGGGAGGAAGAAAAAGACA
AGACAGGGCAGGGGAAGGCCAAGAATAAATCCCCCAAGAATCCTCTCGTC
GTCGGCCGTGAGGGGGGAGGGAGGGGGAGGGGGAGGGGGAGGAAGAGAGG
GAGGCTGA
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protein sequence of NO05G05080.1

>NO05G05080.1-protein ID=NO05G05080.1-protein|Name=NO05G05080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=920bp
MPASRGLEWRRGSRKRKLPSRFKEETEEEQYDQRQEEEEEEKEEHGESLL
PSPASYQMHDDEQDEEELEDEEEFAVLFPGPSASTNSSSSSTISPIHVLS
RRCRGGSVRRGRGRGRGQGQVRGKGRGKAMELTALSYSSPRRQHRSAAHC
VRLTASPATVAAALEEEKTRKNKTEIEEEESEEEEEKDLALDRVLRGDVT
VAEARALLDLPAQDAFAERKKKGKGPRIPHLSRLLEKDEGGEGGKGGERG
ALLTVAEQVDLLEEAAKAGWGDNHVSSADRRHKALNLLKWAKDSAGVWQA
RKALHRRRQQAAAASAGKEGGAERDSLSPSLSCPSSSSSSSFSSSSTTPI
FINPSKLEKLALKGPALLRIARRTFLSSSPSSSSSLSILLSTVETLYSSF
QSWCQRAGPLANIKNTTRRKTVQKMPWSLVEELMEDEEEGGGDAFALVEV
PGRQNLIDLKQQATVWREQGRKIWDRTAPGDTQILKVSEWKDPLLPSLPP
SSCRGEVGGKAVAGAAMAVLGKREMLDFVNRSYSLWEEQEVAPVEIPGKT
ALEWLWRVGDWARNALDHVRRARGEVGKEGGVEAPRAMGLSAEELERLVG
SPRIEGLLGPGGMEEGWRQGLMEEEYEVRVVDREEGEEGGKVFMLSEWVD
LNKESWPVWAQELREGGREDGRGVGVEVEVKGFRGREVVGSLQVYLGMKR
WVALAEKWRRTARQLLKGEGGGKVGNVIPPTAGELESLYHLGTVLAPGSE
AAVGETLAVLHEKYGLKPTPAFPPSLLPSVGGPLALVSTVAAELAAKKEG
REGGKEGWSRSATPISFEADSEGEEEGRKEEGEGGIKVEGEKEEDREEEE
DREEEEDREEEEEEEEEEEEEEEEEERVGRKKKTRQGRGRPRINPPRILS
SSAVRGEGGGGGGGGREGG*
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Synonyms
Publications