NO05G04980, NO05G04980 (gene) Nannochloropsis oceanica

Overview
NameNO05G04980
Unique NameNO05G04980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2154
Alignment locationchr5:1297792..1299945 +

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Properties
Property NameValue
DescriptionRegulator of nonsense transcripts UPF2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1297792..1299945 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
Homology
[Close]
BLAST of NO05G04980 vs. NCBI_GenBank
Match: CBN74240.1 (putative hUPF2 [Ectocarpus siliculosus])

HSP 1 Score: 113.2 bits (282), Expect = 1.600e-21
Identity = 75/180 (41.67%), Postives = 98/180 (54.44%), Query Frame = 0 
Query:  128 QLEEMEKAEEARAALRLQNAPAAVRVSRAEHEAGLKKLKSDLKRTTALIKKVKTALGEDQREIILRDISALNLTMFVSELVQGVIEAKLKPADVPAAVQVCSALHQRYGAFTTGLMAALPGILLDKGGRXXXXXXXXXXXXXXXXXXXXXXRQVLRLLIELYLVGVHQDHPLLLRLVKSI 308
            QL+ ++K E AR  LR ++ P A++ SR  HEA   KLKSDLK+TTA  KKVK AL EDQR  + +D+  LNL  +VSE+V  V E +LK ADV  AV +C  +HQRY  F   L+  L    L   G                       R  LRLL EL+  GV     L++R+V+S+
Sbjct:  417 QLDLLQKEERARRELREKHTPEALKASRDAHEANKPKLKSDLKKTTAFTKKVK-ALSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQRYAEFAEDLIPKLAAPFLSAPG---------GEEEREEKELLRRKRSNLRLLTELHASGVFDGSRLIVRIVRSL 586
[Close]
BLAST of NO05G04980 vs. NCBI_GenBank
Match: XP_010658462.1 (PREDICTED: regulator of nonsense transcripts UPF2 isoform X1 [Vitis vinifera])

HSP 1 Score: 101.7 bits (252), Expect = 4.700e-18
Identity = 70/185 (37.84%), Postives = 105/185 (56.76%), Query Frame = 0 
Query:  125 AIKQLEEMEKAEEARAALRLQNAPAAVRVSRAEHEAG-LKKLKSDLKRTTALIKKVKTALGEDQREIILRDISALNLTMFVSELVQGVIEAKLKPADVPAAVQVCSALHQRYGAFTTGLMAALPGILL-DKGGRXXXXXXXXXXXXXXXXXXXXXXRQVLRLLIELYLVGVHQDHPLLLRLVKSI 308
            A+ +LEE +K+ EA+ ALR  N    +   R E ++G L+ L S +KR TA+IKK+K  + E+QRE ++ D+  +NL+ FVSE V  + +AKLK +D+ AAVQ+CS LHQRY  F+  L+  L  +    K G                       R  L+LL+ELY VGV +D  + + ++K +
Sbjct:   23 AVARLEEFKKSMEAKMALRRTN----LNPERPETDSGFLRTLDSSIKRNTAVIKKLK-QINEEQREGLMDDLRGVNLSKFVSEAVTAICDAKLKTSDIQAAVQICSLLHQRYKDFSPSLIQGLLKVFFPGKSG---------DELDLDRNLKAMKKRSTLKLLLELYFVGVVEDSGIFINIIKDL 193
[Close]
BLAST of NO05G04980 vs. NCBI_GenBank
Match: XP_021648638.1 (regulator of nonsense transcripts UPF2-like isoform X1 [Hevea brasiliensis])

HSP 1 Score: 99.8 bits (247), Expect = 1.800e-17
Identity = 67/184 (36.41%), Postives = 102/184 (55.43%), Query Frame = 0 
Query:  125 AIKQLEEMEKAEEARAALRLQNAPAAVRVSRAEHEAGLKKLKSDLKRTTALIKKVKTALGEDQREIILRDISALNLTMFVSELVQGVIEAKLKPADVPAAVQVCSALHQRYGAFTTGLMAALPGILL-DKGGRXXXXXXXXXXXXXXXXXXXXXXRQVLRLLIELYLVGVHQDHPLLLRLVKSI 308
            A+ +LEEM+K+ EA+ ALR  N    +   R      L+ L S +KR TA+IKK+K  + E+QRE ++ ++  +NL+ FVSE V  + +AKL+ +D+ AAVQ+CS LHQRY  F+  L+  L  +    K G                       R  L+LL+ELY VGV +D  + + ++K +
Sbjct:   23 ALARLEEMKKSVEAKVALRQSN----LNPERPADSGFLRTLDSSIKRNTAVIKKLK-QINEEQREGLMDELRNVNLSKFVSEAVTAICDAKLRTSDIQAAVQICSLLHQRYKDFSPSLVQGLLKVFFPGKSGE---------DLEVDRNSKAMKKRSTLKLLLELYFVGVIEDSSIFINIIKDL 192
[Close]
BLAST of NO05G04980 vs. NCBI_GenBank
Match: XP_002900183.1 (regulator of nonsense transcripts 2, putative [Phytophthora infestans T30-4] >EEY60387.1 regulator of nonsense transcripts 2, putative [Phytophthora infestans T30-4])

HSP 1 Score: 99.4 bits (246), Expect = 2.300e-17
Identity = 71/193 (36.79%), Postives = 103/193 (53.37%), Query Frame = 0 
Query:  121 VQLAAIKQLEEMEKAEEARAALRLQNAPAAVRVSRAEHEAGLKKLKSDLKRTTALIKKVKTALGEDQREIILRDISALNLTMFVSELVQGVIEAKLKPADVPAAVQVCSALHQRYGAFTTGLMAALPGIL------LDKGGRXXXXXXXXXXXXXXXXXXXXXXRQVLRLLIELYLVGVHQDHPLLLRLVKSI 308
            VQ  A+ QL E+++  E R+ALR  +A +   V+    +    KLKSD+KR++A +KK++  L E   + +LRD + LNLT +VSE V  + +A LK AD+PAAV+V S LHQRY  F  G++ AL           DKG                        R +LRLL ELYL GV  D  ++  +++ +
Sbjct:   10 VQAQALSQLRELQRQREVRSALR--SANSVTNVAAVREQLATLKLKSDIKRSSAFVKKLR-VLSEANADSLLRDAAELNLTRYVSECVAALADAPLKAADLPAAVKVASLLHQRYEDFAPGMVRALVSSFEASYTSEDKG-------------------KMLRRRLLLRLLCELYLAGVFDDVQVIAHIIQRV 180
[Close]
BLAST of NO05G04980 vs. NCBI_GenBank
Match: CDY24973.1 (BnaC03g21990D [Brassica napus])

HSP 1 Score: 99.4 bits (246), Expect = 2.300e-17
Identity = 69/183 (37.70%), Postives = 103/183 (56.28%), Query Frame = 0 
Query:  125 AIKQLEEMEKAEEARAALRLQNAPAAVRVSRAEHEAGLKKLKSDLKRTTALIKKVKTALGEDQREIILRDISALNLTMFVSELVQGVIEAKLKPADVPAAVQVCSALHQRYGAFTTGLMAALPGILLDKGGRXXXXXXXXXXXXXXXXXXXXXXRQVLRLLIELYLVGVHQDHPLLLRLVKSI 308
            A+ +LEE++K+ EA+ ALR  N    +   R +  A L+ L S +KR TA+IKK+K  + E+QRE ++ D+ ++NL+ FVSE V  + EAKLK +D+ AAVQ+CS LHQRY  F+  L   L  + L                           R  L+LL+ELY VGV +D  + + ++K +
Sbjct:   20 ALARLEEIKKSIEAKMALRQNN----LNPERPD-SAYLRTLDSSIKRNTAVIKKLK-QINEEQREGLMDDLRSVNLSKFVSEAVTAICEAKLKSSDIQAAVQICSLLHQRYKEFSPSLTQGLLKVFL--------PGKSAEDVDADRNSKAMKKRSTLKLLLELYYVGVIEDSNIFISIIKDL 188
[Close]
BLAST of NO05G04980 vs. NCBI_GenBank
Match: CDY07661.1 (BnaA03g18500D [Brassica napus])

HSP 1 Score: 99.4 bits (246), Expect = 2.300e-17
Identity = 69/183 (37.70%), Postives = 103/183 (56.28%), Query Frame = 0 
Query:  125 AIKQLEEMEKAEEARAALRLQNAPAAVRVSRAEHEAGLKKLKSDLKRTTALIKKVKTALGEDQREIILRDISALNLTMFVSELVQGVIEAKLKPADVPAAVQVCSALHQRYGAFTTGLMAALPGILLDKGGRXXXXXXXXXXXXXXXXXXXXXXRQVLRLLIELYLVGVHQDHPLLLRLVKSI 308
            A+ +LEE++K+ EA+ ALR  N    +   R +  A L+ L S +KR TA+IKK+K  + E+QRE ++ D+ ++NL+ FVSE V  + EAKLK +D+ AAVQ+CS LHQRY  F+  L   L  + L                           R  L+LL+ELY VGV +D  + + ++K +
Sbjct:   17 ALARLEEIKKSIEAKMALRQSN----LNPERPD-SAYLRTLDSSIKRNTAVIKKLK-QINEEQREGLMDDLRSVNLSKFVSEAVTAICEAKLKSSDIQAAVQICSLLHQRYKEFSPSLTQGLLKVFL--------PGKSADDVDADRNSKAMKKRSTLKLLLELYYVGVIEDSNIFISIIKDL 185
[Close]
BLAST of NO05G04980 vs. NCBI_GenBank
Match: XP_009133350.1 (PREDICTED: regulator of nonsense transcripts UPF2 [Brassica rapa])

HSP 1 Score: 99.4 bits (246), Expect = 2.300e-17
Identity = 69/183 (37.70%), Postives = 103/183 (56.28%), Query Frame = 0 
Query:  125 AIKQLEEMEKAEEARAALRLQNAPAAVRVSRAEHEAGLKKLKSDLKRTTALIKKVKTALGEDQREIILRDISALNLTMFVSELVQGVIEAKLKPADVPAAVQVCSALHQRYGAFTTGLMAALPGILLDKGGRXXXXXXXXXXXXXXXXXXXXXXRQVLRLLIELYLVGVHQDHPLLLRLVKSI 308
            A+ +LEE++K+ EA+ ALR  N    +   R +  A L+ L S +KR TA+IKK+K  + E+QRE ++ D+ ++NL+ FVSE V  + EAKLK +D+ AAVQ+CS LHQRY  F+  L   L  + L                           R  L+LL+ELY VGV +D  + + ++K +
Sbjct:   17 ALARLEEIKKSIEAKMALRQSN----LNPERPD-SAYLRTLDSSIKRNTAVIKKLK-QINEEQREGLMDDLRSVNLSKFVSEAVTAICEAKLKSSDIQAAVQICSLLHQRYKEFSPSLTQGLLKVFL--------PGKSADDVDADRNSKAMKKRSTLKLLLELYYVGVIEDSNIFISIIKDL 185
[Close]
BLAST of NO05G04980 vs. NCBI_GenBank
Match: XP_013629078.1 (PREDICTED: regulator of nonsense transcripts UPF2 [Brassica oleracea var. oleracea])

HSP 1 Score: 99.4 bits (246), Expect = 2.300e-17
Identity = 69/183 (37.70%), Postives = 103/183 (56.28%), Query Frame = 0 
Query:  125 AIKQLEEMEKAEEARAALRLQNAPAAVRVSRAEHEAGLKKLKSDLKRTTALIKKVKTALGEDQREIILRDISALNLTMFVSELVQGVIEAKLKPADVPAAVQVCSALHQRYGAFTTGLMAALPGILLDKGGRXXXXXXXXXXXXXXXXXXXXXXRQVLRLLIELYLVGVHQDHPLLLRLVKSI 308
            A+ +LEE++K+ EA+ ALR  N    +   R +  A L+ L S +KR TA+IKK+K  + E+QRE ++ D+ ++NL+ FVSE V  + EAKLK +D+ AAVQ+CS LHQRY  F+  L   L  + L                           R  L+LL+ELY VGV +D  + + ++K +
Sbjct:   20 ALARLEEIKKSIEAKMALRQNN----LNPERPD-SAYLRTLDSSIKRNTAVIKKLK-QINEEQREGLMDDLRSVNLSKFVSEAVTAICEAKLKSSDIQAAVQICSLLHQRYKEFSPSLTQGLLKVFL--------PGKSAEDVDADRNSKAMKKRSTLKLLLELYYVGVIEDSNIFISIIKDL 188
[Close]
BLAST of NO05G04980 vs. NCBI_GenBank
Match: XP_022571701.1 (regulator of nonsense transcripts UPF2 [Brassica napus])

HSP 1 Score: 99.4 bits (246), Expect = 2.300e-17
Identity = 69/183 (37.70%), Postives = 103/183 (56.28%), Query Frame = 0 
Query:  125 AIKQLEEMEKAEEARAALRLQNAPAAVRVSRAEHEAGLKKLKSDLKRTTALIKKVKTALGEDQREIILRDISALNLTMFVSELVQGVIEAKLKPADVPAAVQVCSALHQRYGAFTTGLMAALPGILLDKGGRXXXXXXXXXXXXXXXXXXXXXXRQVLRLLIELYLVGVHQDHPLLLRLVKSI 308
            A+ +LEE++K+ EA+ ALR  N    +   R +  A L+ L S +KR TA+IKK+K  + E+QRE ++ D+ ++NL+ FVSE V  + EAKLK +D+ AAVQ+CS LHQRY  F+  L   L  + L                           R  L+LL+ELY VGV +D  + + ++K +
Sbjct:   17 ALARLEEIKKSIEAKMALRQSN----LNPERPD-SAYLRTLDSSIKRNTAVIKKLK-QINEEQREGLMDDLRSVNLSKFVSEAVTAICEAKLKSSDIQAAVQICSLLHQRYKEFSPSLTQGLLKVFL--------PGKSADDVDADRNSKAMKKRSTLKLLLELYYVGVIEDSNIFISIIKDL 185
[Close]
BLAST of NO05G04980 vs. NCBI_GenBank
Match: XP_013734602.2 (LOW QUALITY PROTEIN: regulator of nonsense transcripts UPF2 [Brassica napus])

HSP 1 Score: 99.4 bits (246), Expect = 2.300e-17
Identity = 69/183 (37.70%), Postives = 103/183 (56.28%), Query Frame = 0 
Query:  125 AIKQLEEMEKAEEARAALRLQNAPAAVRVSRAEHEAGLKKLKSDLKRTTALIKKVKTALGEDQREIILRDISALNLTMFVSELVQGVIEAKLKPADVPAAVQVCSALHQRYGAFTTGLMAALPGILLDKGGRXXXXXXXXXXXXXXXXXXXXXXRQVLRLLIELYLVGVHQDHPLLLRLVKSI 308
            A+ +LEE++K+ EA+ ALR  N    +   R +  A L+ L S +KR TA+IKK+K  + E+QRE ++ D+ ++NL+ FVSE V  + EAKLK +D+ AAVQ+CS LHQRY  F+  L   L  + L                           R  L+LL+ELY VGV +D  + + ++K +
Sbjct:   20 ALARLEEIKKSIEAKMALRQNN----LNPERPD-SAYLRTLDSSIKRNTAVIKKLK-QINEEQREGLMDDLRSVNLSKFVSEAVTAICEAKLKSSDIQAAVQICSLLHQRYKEFSPSLTQGLLKVFL--------PGKSAEDVDADRNSKAMKKRSTLKLLLELYYVGVIEDSNIFISIIKDL 188
The following BLAST results are available for this feature:
BLAST of NO05G04980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN74240.11.600e-2141.67putative hUPF2 [Ectocarpus siliculosus][more]
XP_010658462.14.700e-1837.84PREDICTED: regulator of nonsense transcripts UPF2 ... [more]
XP_021648638.11.800e-1736.41regulator of nonsense transcripts UPF2-like isofor... [more]
XP_002900183.12.300e-1736.79regulator of nonsense transcripts 2, putative [Phy... [more]
CDY24973.12.300e-1737.70BnaC03g21990D [Brassica napus][more]
CDY07661.12.300e-1737.70BnaA03g18500D [Brassica napus][more]
XP_009133350.12.300e-1737.70PREDICTED: regulator of nonsense transcripts UPF2 ... [more]
XP_013629078.12.300e-1737.70PREDICTED: regulator of nonsense transcripts UPF2 ... [more]
XP_022571701.12.300e-1737.70regulator of nonsense transcripts UPF2 [Brassica n... [more]
XP_013734602.22.300e-1737.70LOW QUALITY PROTEIN: regulator of nonsense transcr... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04980.1NO05G04980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670060gene_3316Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04980.1NO05G04980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04980 ID=NO05G04980|Name=NO05G04980|organism=Nannochloropsis oceanica|type=gene|length=2154bp
ATGCAAAAAGGCGGCGATGATAAAGGTGGGGGAGCCATTAGCAGTGGCGA
TGGAGCCGGCAAAGgtatcggtggtacctgtccctttctcgtttcttccc
tcccttcctccctcccccccatccgcgcaccctctcgccacgcgccatac
tcacatgccccattccacccctcataacctacacagAACGGCGCCAACGC
GGCGACCGTAATGGCAGCGGTAGTGGTAGAGGCACACGCAAGTCTAGCGG
CAGGACGACGAAAGCCAGCAAGGACATTCCCGTGACCCTTCTCAGCAAAG
AAAAACCTCCGGTAGCTGCTGTTGCTGCCCTTTCTCCTCCACCACCACCA
AGCGCCGAAGAAAGAGCAGCGGCGCAGCAAAAACAACGAGACGATGACGC
AGAGGCAGCGGCAGCCAAGGCTGCAGCCATGCAGAAGCGGAAGGAAGAGG
AAGAGGCAAGGAGGAAGGAACAAGAAAAGGAGGTCCAATTGGCGGCGATC
AAGCAGCTGGAGGAGATGGAGAAGGCAGAGGAGgtaggacgtgaaaagaa
agggaaaaggggagggattgcaggacgagatcggtgccctatttatttga
ttccgctcgaaagcatacacctggttgcctttttttcacgccgcatgtca
atcaacggttttgtgggtcagtttcacacacacacacacacacacacaca
cacacacaccacacacacacacacacacacacacacacacacacacacac
acacacacacaccacacacacacacacacaccacacacacacacacacac
acacacacacacacacacacacacacacacacacacacacaccacacaca
cacacacacacacacacacacacacacacacacacacacacacacacaca
cacattcacacacacacacacacacatctacacatcacccctccccaaat
acatatccgtacatttcgacatccaacattccgacatccgtgcacacatt
ctcccctccctcccctcacccttaagGCCCGCGCCGCCCTCCGTCTCCAA
AATGCACCGGCCGCCGTGCGTGTTTCTCGTGCCGAGCACGAAGCCGGGCT
GAAGAAGTTGAAGTCGGATCTAAAGAGGACAACAGCGTTGATTAAGAAGG
TCAAGACGGCCCTGGGGGAAGATCAGCGGGAGATTATTTTGAGgtagggc
gtaggacgagggggagggagggagggagggagggagtggaaagagggaag
agaggtaagaaggactttccgtcggggtgtaaatgtaccgtgcttgtcgt
gccaggagccccatgccttgaaaactcataaaccctcccttcctccctcc
ctccgtctctccgtccctcctccaagGGACATCTCGGCATTGAACCTGAC
CATGTTCGTGTCGGAACTCGTCCAGGGCGTGATAGAAGCCAAGCTTAAGC
CAGCCGACGTCCCTGCTGCGGTGCAGgtagggagcgagggaggaagggag
gaggcaagggagggaggaaaagagggagggaggggcggagggagggaaga
agtgagggtttggagcgcttatatatttttttggtaaccttttcttccct
ccctccctccctccctccctccctccctcccccctcccttcttcggtagG
TGTGCTCGGCTCTGCATCAGCGATACGGCGCGTTCACTACAGGGCTCATG
GCGGCCTTGCCCGGCATCCTTCTCGACAAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGGGGCCAGCTGCGGGAGAGGATGCCAAGGAGGCCGGGAGGC
GAAAGCGCCAGgtagggaggaaggaagggagggagggagggagggaggga
gggagggagggagggaggacaggatctgctcatattttgggtgactcata
caatctccctcttttcctacccttccctccctccctccctccctccctcc
ctccctcctttcctcttgtagGTCCTCCGCCTCCTGATCGAGCTCTATCT
TGTGGGCGTGCATCAAGATCACCCCCTCCTCCTCCGCCTCGTCAAATCCA
TCCTCCCTCCCGTCCCCCCCTCTTCGCCCCCCCCCCCTCGACGGACCAGG
ACAACAGCACCACTGGAGGCGGCGGCGGCGGCGGTGGCGGAGGCAGGAGC
CTGA
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protein sequence of NO05G04980.1

>NO05G04980.1-protein ID=NO05G04980.1-protein|Name=NO05G04980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=341bp
MQKGGDDKGGGAISSGDGAGKERRQRGDRNGSGSGRGTRKSSGRTTKASK
DIPVTLLSKEKPPVAAVAALSPPPPPSAEERAAAQQKQRDDDAEAAAAKA
AAMQKRKEEEEARRKEQEKEVQLAAIKQLEEMEKAEEARAALRLQNAPAA
VRVSRAEHEAGLKKLKSDLKRTTALIKKVKTALGEDQREIILRDISALNL
TMFVSELVQGVIEAKLKPADVPAAVQVCSALHQRYGAFTTGLMAALPGIL
LDKGGREGGREGGGPAAGEDAKEAGRRKRQVLRLLIELYLVGVHQDHPLL
LRLVKSILPPVPPSSPPPPRRTRTTAPLEAAAAAVAEAGA*
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Synonyms
Publications