NO05G04930, NO05G04930 (gene) Nannochloropsis oceanica

Overview
NameNO05G04930
Unique NameNO05G04930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length954
Alignment locationchr5:1280737..1281690 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1280737..1281690 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO05G04930 vs. NCBI_GenBank
Match: EWM27901.1 (hypothetical protein Naga_100338g4 [Nannochloropsis gaditana])

HSP 1 Score: 241.5 bits (615), Expect = 3.500e-60
Identity = 136/235 (57.87%), Postives = 173/235 (73.62%), Query Frame = 0 
Query:   60 HPILYARLKNTGNKVDLDPDEIERLFQAFLRGDRSSMEQYEEQRRLQAEKAEEDTQGLWGKAKHVIRGIGSKVPLLFMAPLVLWVGFQLSGLAVALALTSAVVLAGFALPPMFALTFLIPLIALLTLGIFVFPIVPFAILGFLPGFALLPLLFLGGFFWLTQFSGLSSSISSRSSGGIVDGDDGSWPWGNSGFSWISINDEDGETVSQGMWGTR-----RAERGGVIDVKATDAD 290
            H ILYARL++ G+    + DE+E L +A LRGDR SME YE++RRL+A + EE +QGLWGKAK ++R + SK PLL +AP+VLW GFQLSG+AV+L LTSA+V A FALPPMFALTFL+PL+ L+ +G FVFPI+PFAILGFLPGF LLPL+FLGG F LTQF+G  SS SS S+ G+   D+ SWPWG   F+W++++        +GM G R     R    G+IDV AT+AD
Sbjct:  108 HTILYARLRDRGD----EEDEMESLLRALLRGDRGSMEDYEQRRRLEAVRQEEASQGLWGKAKSIVRRVASKAPLLLIAPVVLWAGFQLSGVAVSLGLTSALVFASFALPPMFALTFLMPLVVLMLVGTFVFPILPFAILGFLPGFVLLPLVFLGGVFMLTQFAG--SSRSSSSTWGLTGFDEESWPWGGKTFTWVTLD------ADEGMEGRRKDQSNRGRNDGIIDVTATEAD 330
The following BLAST results are available for this feature:
BLAST of NO05G04930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27901.13.500e-6057.87hypothetical protein Naga_100338g4 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003355NSK003355Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04930.1NO05G04930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585291gene_3311Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100338g4gene2658Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04930.1NO05G04930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04930 ID=NO05G04930|Name=NO05G04930|organism=Nannochloropsis oceanica|type=gene|length=954bp
ATGCAGCGGCATGCATTTCCTAGCTTGTTGGCGGCGACAGCAGCGGTAGT
GGTATGCTGTTTCATCGTTCCTGTCCACGCCTTCATCTGTCCGACCCTGT
CCCACCATCGACTTGTCGCACCCCCGCCTGCCCACGCGTCCAAAGCCGCC
CTGAGCAGGAGAAGAAGACAACGTGCACATCCCATCCTCTACGCTCGACT
GAAGAATACAGGTAACAAAGTGGATCTCGACCCGGACGAAATAGAACGCC
TTTTTCAAGCGTTCCTCCGCGGAGACCGCAGTAGCATGGAGCAATACGAG
GAGCAGCGGCGTCTACAAGCGGAAAAAGCAGAAGAAGACACACAAGGCCT
GTGGGGCAAGGCCAAACATGTCATTCGAGGCATTGGATCCAAGGTCCCTC
TTTTATTTATGGCTCCCCTTGTCCTATGGGTGGGGTTCCAACTAAGTGGA
TTGGCGGTGGCGCTTGCGTTGACATCTGCCGTTGTGCTGGCAGGCTTTGC
ACTTCCCCCCATGTTCGCCCTCACATTTTTGATACCGCTTATTGCGTTGC
TGACACTTGGAATTTTTGTATTTCCCATCGTTCCGTTCGCGATCCTTGGT
TTCCTACCTGGTTTTGCTCTTTTGCCGTTGCTCTTTTTGGGAGGGTTCTT
CTGGTTAACGCAATTTTCAGGCTTGAGCAGCAGCATCAGCAGCAGGAGCA
GCGGGGGGATAGTGGATGGGGATGATGGGTCATGGCCATGGGGTAATAGT
GGCTTTAGCTGGATTAGTATCAACGACGAGGACGGCGAGACAGTTAGTCA
GGGGATGTGGGGAACGCGAAGGGCGGAAAGAGGAGGGGTCATTGATGTCA
AGGCGACTGACGCGGATGATGATGAGGACGAGGATGGGGGAAATGTGGGA
AGCGCCGGAAGAGATTTGGAGGATTTTGATCGCCGTTTGCGTGATCGAGA
ATGA
back to top

protein sequence of NO05G04930.1

>NO05G04930.1-protein ID=NO05G04930.1-protein|Name=NO05G04930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MQRHAFPSLLAATAAVVVCCFIVPVHAFICPTLSHHRLVAPPPAHASKAA
LSRRRRQRAHPILYARLKNTGNKVDLDPDEIERLFQAFLRGDRSSMEQYE
EQRRLQAEKAEEDTQGLWGKAKHVIRGIGSKVPLLFMAPLVLWVGFQLSG
LAVALALTSAVVLAGFALPPMFALTFLIPLIALLTLGIFVFPIVPFAILG
FLPGFALLPLLFLGGFFWLTQFSGLSSSISSRSSGGIVDGDDGSWPWGNS
GFSWISINDEDGETVSQGMWGTRRAERGGVIDVKATDADDDEDEDGGNVG
SAGRDLEDFDRRLRDRE*
back to top
Synonyms
Publications